Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006741

Physical Location & Seq

Genomic Coordinates Forward (+)

5171556 .. 5174241

Gene Structure 2686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCGGGATAGCTCCGGCTACAAGGAATACGTGGCCGGATTGCTCGCCGGCGTTGCCACTGTCAGCACCGGCCATCCATTTGACACCGTCAAGGTGAAGATGCAAATGCACAACACTGTAGACCATGGGATTACATATCGGAACGGCTTGCATTGTACTGCGAGGATACTAAGGACTGAAGGGATAAAAGGACTTTACAGAGGGGCAACATCATCTTTTGTGGGGGTAGCTTTTGAGAGTTCGCTTCTTTTTGGCATGTATTCCCAGATGAAACAGTCGCTGCAGGGAAATGTGCAAAGTGTTGTGCCTCAACCACATGTCATAATTCCATCTGCAGCTTCTGGTGGAGCAGTGATCAGTTTTATTCTATGCCCCTCAGAGCTAGTGAAGTGTAGGATGCAAGTTCAAGGCACAGACTCTTTGATACCGATATCAAGTAGATATGCCGGCCCTCTTGATTGTGCCATTAAAACTGTAAAAGAGGATGGGGTTAGAGGAATTTTTCGTGGAGGTTTTACAACATTGTTAAGAGAAGCTACTGGAAATGCAGTCTTTTTTAGCGTATATGAATATGTCCGCTATCAGATGCATTTACAACTGAACTCTGCTTCATCAGGCCACAAGAACTTGATTGACTTGGGAGTTGGGGTTCTTAGTGGTGGCCTTAGTGGTATAGCTGTATGCATCTTCCCAGTTTGTCACTCTTGTATAATGCACCTGTTCACATTCTTATTACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005290 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015238 GO:0015318 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0089709 GO:0098655 GO:0098656 GO:1901474 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

247

Amino Acids

26.53

Weight (kDa)

9.11

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 96	8.9e-23	Mitochondrial carrier protein
Mito_carr	PF00153	111 - 193	1.1e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33820 AT2G33820 AT2G33820 AT2G33820
fragaria_vesca	FvH4_3g08870 FvH4_3g08870 FvH4_3g08870
malus_domestica	MD05G1312200.v1.1 MD10G1291700.v1.1
prunus_persica	Prupe.4G050500_v2.0.a1 Prupe.4G050500_v2.0.a1
pyrus_communis	pycom05g28810 pycom10g24390
rosa_chinensis	RchiOBHm_Chr5g0008881
rosa_laevigata	RLG00000031613
rosa_multiflora	Rmu_sc0004677.1_g000009 Rmu_sc0037535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067120 Rroxscaffold_1G00067740
rosa_rugosa	Rorug04G0440000 Rorug04G0440000
rosa_samantha	Rh5AG068400 Rh5BG065300 Rh5CG076500 Rh5DG064200
rosa_wichuraiana	Rw5G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	2 cut(s)	4, 577
AcoI	YGGCCR	2 cut(s)	33, 70
AcsI	RAATTY	1 cut(s)	498
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	157
AflIII	ACRYGT	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	407
AloI	GAACNNNNNNTCC	2 cut(s)	633, 665
AluBI	AGCT	6 cut(s)	12, 230, 338, 382, 536, 677
AluI	AGCT	6 cut(s)	12, 230, 338, 382, 536, 677
AlwNI	CAGNNNCTG	2 cut(s)	280, 341
AoxI	GGCC	5 cut(s)	33, 70, 448, 616, 661
ApeKI	GCWGC	2 cut(s)	280, 335
ApoI	RAATTY	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	267, 347
BccI	CCATC	3 cut(s)	81, 337, 479
BceAI	ACGGC	1 cut(s)	160
BciVI	GTATCC	1 cut(s)	159
BclI	TGATCA	1 cut(s)	354
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	3 cut(s)	117, 281, 333
BfuI	GTATCC	1 cut(s)	159
BisI	GCNGC	2 cut(s)	281, 336
BlsI	GCNGC	2 cut(s)	282, 337
BmgT120I	GGNCC	1 cut(s)	449
BmrI	ACTGGG	1 cut(s)	686
BmsI	GCATC	4 cut(s)	90, 387, 576, 693
BmuI	ACTGGG	1 cut(s)	686
BsaAI	YACGTR	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	633, 663
Bse118I	RCCGGY	3 cut(s)	47, 68, 446
Bse1I	ACTGG	2 cut(s)	544, 692
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	3 cut(s)	73, 402, 490
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	544, 692
BseXI	GCAGC	2 cut(s)	267, 347
BshFI	GGCC	5 cut(s)	35, 72, 450, 618, 663
BsiSI	CCGG	5 cut(s)	15, 36, 48, 69, 447
BsnI	GGCC	5 cut(s)	35, 72, 450, 618, 663
Bsp143I	GATC	1 cut(s)	354
Bsp19I	CCATGG	1 cut(s)	124
BspACI	CCGC	2 cut(s)	4, 577
BspANI	GGCC	5 cut(s)	35, 72, 450, 618, 663
BspCNI	CTCAG	1 cut(s)	389
BspMAI	CTGCAG	2 cut(s)	285, 337
BsrFI	RCCGGY	3 cut(s)	47, 68, 446
BsrI	ACTGG	2 cut(s)	544, 692
BssAI	RCCGGY	3 cut(s)	47, 68, 446
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	124
Bst4CI	ACNGT	6 cut(s)	61, 88, 118, 276, 475, 738
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	4 cut(s)	45, 49, 149, 448
BstDEI	CTNAG	4 cut(s)	170, 376, 653, 665
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	3 cut(s)	73, 402, 490
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNSI	RCATGY	2 cut(s)	259, 320
BstSFI	CTRYAG	3 cut(s)	117, 281, 333
BstV1I	GCAGC	2 cut(s)	267, 347
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	5 cut(s)	35, 72, 450, 618, 663
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	3 cut(s)	73, 402, 490
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	3 cut(s)	57, 114, 357
Cac8I	GCNNGC	4 cut(s)	45, 49, 149, 448
CaiI	CAGNNNCTG	2 cut(s)	280, 341
Cfr10I	RCCGGY	3 cut(s)	47, 68, 446
Cfr13I	GGNCC	1 cut(s)	449
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	3 cut(s)	125, 256, 317
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	4 cut(s)	170, 376, 653, 665
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
EaeI	YGGCCR	2 cut(s)	33, 70
Eco130I	CCWWGG	1 cut(s)	124
Eco32I	GATATC	1 cut(s)	432
Eco57I	CTGAAG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	432
EcoT14I	CCWWGG	1 cut(s)	124
EcoT22I	ATGCAT	2 cut(s)	591, 686
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	3 cut(s)	128, 259, 320
FatI	CATG	3 cut(s)	124, 255, 316
FbaI	TGATCA	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	281, 336
FokI	GGATG	3 cut(s)	60, 409, 497
Fsp4HI	GCNGC	2 cut(s)	281, 336
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	2 cut(s)	281, 336
HaeIII	GGCC	5 cut(s)	35, 72, 450, 618, 663
HapII	CCGG	5 cut(s)	15, 36, 48, 69, 447
Hin1II	CATG	3 cut(s)	128, 259, 320
HinfI	GANTC	1 cut(s)	416
HpaII	CCGG	5 cut(s)	15, 36, 48, 69, 447
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	121, 723
Hpy188I	TCNGA	3 cut(s)	141, 379, 585
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	2 cut(s)	121, 723
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	6 cut(s)	61, 88, 118, 276, 475, 738
HpyCH4IV	ACGT	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	4 cut(s)	170, 376, 653, 665
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	128, 259, 320
KroI	GCCGGC	2 cut(s)	47, 446
KroNI	GCCGGC	2 cut(s)	49, 448
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	17, 347
Lsp1109I	GCAGC	2 cut(s)	267, 347
LweI	GCATC	4 cut(s)	90, 387, 576, 693
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	698
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	2 cut(s)	109, 679
MluCI	AATT	2 cut(s)	324, 498
MlyI	GAGTC	1 cut(s)	410
MnlI	CCTC	8 cut(s)	156, 194, 318, 385, 462, 475, 488, 503
Mph1103I	ATGCAT	2 cut(s)	591, 686
MreI	CGCCGGCG	1 cut(s)	47
MroNI	GCCGGC	2 cut(s)	47, 446
MseI	TTAA	2 cut(s)	468, 527
MspI	CCGG	5 cut(s)	15, 36, 48, 69, 447
MwoI	GCNNNNNNNGC	1 cut(s)	53
NaeI	GCCGGC	2 cut(s)	49, 448
NcoI	CCATGG	1 cut(s)	124
NdeII	GATC	1 cut(s)	354
NgoMIV	GCCGGC	2 cut(s)	47, 446
NlaIII	CATG	3 cut(s)	128, 259, 320
NmuCI	GTSAC	1 cut(s)	698
NsiI	ATGCAT	2 cut(s)	591, 686
NspI	RCATGY	2 cut(s)	259, 320
PciI	ACATGT	1 cut(s)	316
PdiI	GCCGGC	2 cut(s)	49, 448
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	282, 337
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
Ppu21I	YACGTR	1 cut(s)	31
PscI	ACATGT	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	449
PstI	CTGCAG	2 cut(s)	285, 337
PstNI	CAGNNNCTG	2 cut(s)	280, 341
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	468, 527
SatI	GCNGC	2 cut(s)	281, 336
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	1 cut(s)	410
SfaNI	GCATC	4 cut(s)	90, 387, 576, 693
SfcI	CTRYAG	3 cut(s)	117, 281, 333
SgrAI	CRCCGGYG	1 cut(s)	47
Sse9I	AATT	2 cut(s)	324, 498
SsiI	CCGC	2 cut(s)	4, 577
SspMI	CTAG	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	6 cut(s)	61, 88, 118, 276, 475, 738
TaiI	ACGT	1 cut(s)	33
TasI	AATT	2 cut(s)	324, 498
TatI	WGTACW	1 cut(s)	155
Tru1I	TTAA	2 cut(s)	468, 527
Tru9I	TTAA	2 cut(s)	468, 527
TscAI	CASTG	3 cut(s)	64, 121, 357
TseFI	GTSAC	1 cut(s)	698
TseI	GCWGC	2 cut(s)	280, 335
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	3 cut(s)	284, 582, 600
TspRI	CASTG	3 cut(s)	64, 121, 357
Tth111I	GACNNNGTC	1 cut(s)	86
XapI	RAATTY	1 cut(s)	498
XceI	RCATGY	2 cut(s)	259, 320
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	1 cut(s)	383
Zsp2I	ATGCAT	2 cut(s)	591, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.