Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006741

Physical Location & Seq

Genomic Coordinates Reverse (-)

6756295 .. 6758754

Gene Structure 2460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031613

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAGGGATAGCTCCGGCTACAAGGAATACGTGGCCGGCTTGCTCGCCGGCGTTGCCACTGTTGGCACCGGCCATCCCTTCGACACCGTCAAGGTGAAGATGCAAATGCACAACACTGTAGAACATGGGATTACATATCGGAACGGTTTGCATTGTACTTCAAGGATACTAAGGACTGAAGGGATTAAAGGACTTTACAGAGGGGCAACTTCATCTTTTATGGGGGTAGCTTTTGAGAGTTCGCTTCTTTTTGGCATGTATTCCCAGATGAAACAGTCGCTGCAGGGAAATGTGCAAAGTGCTGTGCCACAACCACAAATCATAATTCCATCTGCAGCTTTTGGTGGAGCAATGATCAGTTTTATACTATGCCCCTCAGAGCTGGTGAAGTGTAGGATGCAAGTTCAAGGCACAGACTCTTTGATACTGATATCAAGTAGATATGCTGGCCCTCTTGATTGCGCCCTTAAAACTGTAAAAGAGGATGGGGTTAGAGGAATTTTTCGCGGAGGTTTTACAACGTTTTTAAGAGAAGCTACTGGAAATGCAGTCTTTTTCACCGTTTATGAGTATGTTCGCTATCATATGCATTTACAACTGAAATCTGCTTCATCAGACCACAAGAACTTGATTGACGTGGGAGTTGGGATTGTTAGTGGTGGCCTTGGTGGTATAGCTTTTTGGTCTGCTGTGTTGCCCTTGGATGTTGCGAAGACTATAATTCAGACATCTGCAGATAAGAACTCTACAAGAAATCCATTTCAAATCTTAAGCTCAGTAAGAACACCCCTTTTTTTTCTCTTCCCTCTTTGGCTCTCCCCCTTCCCCTCCAATACTCGAGAGAGACTCGATGTACCTTTATTTTTATTTTTTTCGCTCTGCAGATATACAGAATGGCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005290 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015238 GO:0015318 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0089709 GO:0098655 GO:0098656 GO:1901474 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

302

Amino Acids

33.16

Weight (kDa)

9.19

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 96	1.6e-22	Mitochondrial carrier protein
Mito_carr	PF00153	111 - 196	1.8e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33820 AT2G33820 AT2G33820 AT2G33820
fragaria_vesca	FvH4_3g08870 FvH4_3g08870 FvH4_3g08870
malus_domestica	MD05G1312200.v1.1 MD10G1291700.v1.1
prunus_persica	Prupe.4G050500_v2.0.a1 Prupe.4G050500_v2.0.a1
pyrus_communis	pycom05g28810 pycom10g24390
rosa_chinensis	RchiOBHm_Chr5g0008881
rosa_laevigata	RLG00000031613
rosa_multiflora	Rmu_sc0004677.1_g000009 Rmu_sc0037535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067120 Rroxscaffold_1G00067740
rosa_rugosa	Rorug04G0440000 Rorug04G0440000
rosa_samantha	Rh5AG068400 Rh5BG065300 Rh5CG076500 Rh5DG064200
rosa_wichuraiana	Rw5G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AccII	CGCG	1 cut(s)	507
AciI	CCGC	1 cut(s)	507
AclI	AACGTT	1 cut(s)	521
AcoI	YGGCCR	2 cut(s)	33, 70
AcsI	RAATTY	1 cut(s)	498
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	2 cut(s)	157, 855
AflII	CTTAAG	1 cut(s)	769
AgsI	TTSAA	3 cut(s)	162, 407, 764
AjiI	CACGTC	1 cut(s)	637
AluBI	AGCT	7 cut(s)	12, 230, 338, 382, 536, 677, 774
AluI	AGCT	7 cut(s)	12, 230, 338, 382, 536, 677, 774
Alw26I	GTCTC	1 cut(s)	838
AlwNI	CAGNNNCTG	1 cut(s)	280
Ama87I	CYCGRG	1 cut(s)	837
AoxI	GGCC	4 cut(s)	33, 70, 448, 661
ApeKI	GCWGC	2 cut(s)	280, 335
ApoI	RAATTY	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	3 cut(s)	106, 397, 550
AvaI	CYCGRG	1 cut(s)	837
BanI	GGYRCC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	719
BbvI	GCAGC	2 cut(s)	267, 347
BccI	CCATC	3 cut(s)	81, 337, 479
BciVI	GTATCC	1 cut(s)	159
BclI	TGATCA	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	838
BfmI	CTRYAG	5 cut(s)	117, 281, 333, 732, 880
BfrI	CTTAAG	1 cut(s)	769
BfuI	GTATCC	1 cut(s)	159
BisI	GCNGC	2 cut(s)	281, 336
BlsI	GCNGC	2 cut(s)	282, 337
BmeT110I	CYCGRG	1 cut(s)	837
BmgBI	CACGTC	1 cut(s)	637
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	67
BmsI	GCATC	2 cut(s)	90, 387
BpiI	GAAGAC	1 cut(s)	719
BplI	GAGNNNNNCTC	2 cut(s)	831, 863
BsaAI	YACGTR	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	664, 699
Bse118I	RCCGGY	3 cut(s)	35, 47, 68
Bse1I	ACTGG	1 cut(s)	544
Bse3DI	GCAATG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	664, 699
BseGI	GGATG	4 cut(s)	73, 402, 490, 709
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	2 cut(s)	390, 789
BseNI	ACTGG	1 cut(s)	544
BseXI	GCAGC	2 cut(s)	267, 347
Bsh1236I	CGCG	1 cut(s)	507
BshFI	GGCC	4 cut(s)	35, 72, 450, 663
BshNI	GGYRCC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	837
BsiSI	CCGG	4 cut(s)	15, 36, 48, 69
BsmAI	GTCTC	1 cut(s)	838
BsnI	GGCC	4 cut(s)	35, 72, 450, 663
BsoBI	CYCGRG	1 cut(s)	837
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	1 cut(s)	507
BspANI	GGCC	4 cut(s)	35, 72, 450, 663
BspCNI	CTCAG	2 cut(s)	389, 788
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	67
BspMAI	CTGCAG	4 cut(s)	285, 337, 736, 884
BspT107I	GGYRCC	1 cut(s)	65
BspTI	CTTAAG	1 cut(s)	769
BsrDI	GCAATG	1 cut(s)	357
BsrFI	RCCGGY	3 cut(s)	35, 47, 68
BsrI	ACTGG	1 cut(s)	544
BssAI	RCCGGY	3 cut(s)	35, 47, 68
BssECI	CCNNGG	2 cut(s)	664, 699
BssMI	GATC	1 cut(s)	354
BssT1I	CCWWGG	2 cut(s)	664, 699
Bst4CI	ACNGT	7 cut(s)	61, 88, 118, 146, 276, 475, 562
Bst6I	CTCTTC	1 cut(s)	806
BstAFI	CTTAAG	1 cut(s)	769
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	5 cut(s)	37, 41, 45, 49, 448
BstDEI	CTNAG	3 cut(s)	170, 376, 775
BstF5I	GGATG	4 cut(s)	73, 402, 490, 709
BstFNI	CGCG	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	1 cut(s)	357
BstMAI	GTCTC	1 cut(s)	838
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	259
BstSFI	CTRYAG	5 cut(s)	117, 281, 333, 732, 880
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	2 cut(s)	267, 347
BstV2I	GAAGAC	1 cut(s)	719
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	4 cut(s)	35, 72, 450, 663
BtrI	CACGTC	1 cut(s)	637
BtsCI	GGATG	4 cut(s)	73, 402, 490, 709
BtsIMutI	CAGTG	2 cut(s)	57, 114
Cac8I	GCNNGC	5 cut(s)	37, 41, 45, 49, 448
CaiI	CAGNNNCTG	1 cut(s)	280
CfoI	GCGC	1 cut(s)	464
Cfr10I	RCCGGY	3 cut(s)	35, 47, 68
Cfr13I	GGNCC	1 cut(s)	449
Csp6I	GTAC	2 cut(s)	156, 854
CviAII	CATG	2 cut(s)	125, 256
CviQI	GTAC	2 cut(s)	156, 854
DdeI	CTNAG	3 cut(s)	170, 376, 775
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
EaeI	YGGCCR	2 cut(s)	33, 70
Eam1104I	CTCTTC	1 cut(s)	806
EarI	CTCTTC	1 cut(s)	806
Eco130I	CCWWGG	2 cut(s)	664, 699
Eco32I	GATATC	1 cut(s)	432
Eco57I	CTGAAG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	837
EcoRV	GATATC	1 cut(s)	432
EcoT14I	CCWWGG	2 cut(s)	664, 699
EcoT22I	ATGCAT	1 cut(s)	591
ErhI	CCWWGG	2 cut(s)	664, 699
FaeI	CATG	2 cut(s)	128, 259
FatI	CATG	2 cut(s)	124, 255
FauNDI	CATATG	1 cut(s)	585
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	281, 336
FokI	GGATG	4 cut(s)	60, 409, 497, 716
Fsp4HI	GCNGC	2 cut(s)	281, 336
GlaI	GCGC	1 cut(s)	463
GluI	GCNGC	2 cut(s)	281, 336
HaeIII	GGCC	4 cut(s)	35, 72, 450, 663
HapII	CCGG	4 cut(s)	15, 36, 48, 69
HhaI	GCGC	1 cut(s)	464
Hin1II	CATG	2 cut(s)	128, 259
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HinfI	GANTC	2 cut(s)	416, 846
HpaII	CCGG	4 cut(s)	15, 36, 48, 69
HphI	GGTGA	3 cut(s)	106, 397, 550
Hpy188I	TCNGA	4 cut(s)	141, 379, 616, 726
Hpy188III	TCNNGA	2 cut(s)	455, 839
HpyAV	CCTTC	3 cut(s)	88, 173, 832
HpyCH4III	ACNGT	7 cut(s)	61, 88, 118, 146, 276, 475, 562
HpyCH4IV	ACGT	3 cut(s)	30, 521, 636
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	170, 376, 775
HpySE526I	ACGT	3 cut(s)	30, 521, 636
Hsp92II	CATG	2 cut(s)	128, 259
HspAI	GCGC	1 cut(s)	462
KroI	GCCGGC	2 cut(s)	35, 47
KroNI	GCCGGC	2 cut(s)	37, 49
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	17, 347
Lsp1109I	GCAGC	2 cut(s)	267, 347
LweI	GCATC	2 cut(s)	90, 387
MaeII	ACGT	3 cut(s)	30, 521, 636
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	3 cut(s)	109, 724, 793
MluCI	AATT	3 cut(s)	324, 498, 720
MlyI	GAGTC	2 cut(s)	410, 840
MnlI	CCTC	8 cut(s)	194, 385, 462, 475, 488, 503, 816, 838
Mph1103I	ATGCAT	1 cut(s)	591
MreI	CGCCGGCG	1 cut(s)	47
MroNI	GCCGGC	2 cut(s)	35, 47
MseI	TTAA	4 cut(s)	186, 468, 527, 770
MspCI	CTTAAG	1 cut(s)	769
MspI	CCGG	4 cut(s)	15, 36, 48, 69
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	53
NaeI	GCCGGC	2 cut(s)	37, 49
NdeI	CATATG	1 cut(s)	585
NdeII	GATC	1 cut(s)	354
NgoMIV	GCCGGC	2 cut(s)	35, 47
NlaIII	CATG	2 cut(s)	128, 259
NlaIV	GGNNCC	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	591
NspI	RCATGY	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	837
PdiI	GCCGGC	2 cut(s)	37, 49
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	282, 337
PleI	GAGTC	2 cut(s)	410, 840
PpsI	GAGTC	2 cut(s)	410, 840
Ppu21I	YACGTR	1 cut(s)	31
Psp1406I	AACGTT	1 cut(s)	521
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	449
PstI	CTGCAG	4 cut(s)	285, 337, 736, 884
PstNI	CAGNNNCTG	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	2 cut(s)	157, 855
RsaNI	GTAC	2 cut(s)	156, 854
SaqAI	TTAA	4 cut(s)	186, 468, 527, 770
SatI	GCNGC	2 cut(s)	281, 336
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	2 cut(s)	410, 840
SfaNI	GCATC	2 cut(s)	90, 387
SfcI	CTRYAG	5 cut(s)	117, 281, 333, 732, 880
Sfr274I	CTCGAG	1 cut(s)	837
SgrAI	CRCCGGYG	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	837
SmlI	CTYRAG	2 cut(s)	769, 837
SmoI	CTYRAG	2 cut(s)	769, 837
Sse9I	AATT	3 cut(s)	324, 498, 720
SsiI	CCGC	1 cut(s)	507
StyI	CCWWGG	2 cut(s)	664, 699
TaaI	ACNGT	7 cut(s)	61, 88, 118, 146, 276, 475, 562
TaiI	ACGT	3 cut(s)	33, 524, 639
TaqI	TCGA	3 cut(s)	81, 838, 849
TasI	AATT	3 cut(s)	324, 498, 720
TatI	WGTACW	1 cut(s)	155
Tru1I	TTAA	4 cut(s)	186, 468, 527, 770
Tru9I	TTAA	4 cut(s)	186, 468, 527, 770
TscAI	CASTG	2 cut(s)	64, 121
TseI	GCWGC	2 cut(s)	280, 335
TspDTI	ATGAA	3 cut(s)	201, 284, 600
TspRI	CASTG	2 cut(s)	64, 121
Tth111I	GACNNNGTC	1 cut(s)	86
Vha464I	CTTAAG	1 cut(s)	769
XapI	RAATTY	1 cut(s)	498
XceI	RCATGY	1 cut(s)	259
XhoI	CTCGAG	1 cut(s)	837
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.