Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006741

Physical Location & Seq

Genomic Coordinates Reverse (-)

5773202 .. 5775789

Gene Structure 2588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG076500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGGGATAGCTCCGGCTACAAGGAATACGTGGCCGGCTTGCTCGCCGGCGTTGCCACTGTTGGCACCGGCCATCCCTTCGACACCGTCAAGGTGAAGATGCAAATGCACAACACTGTAGAACATGGGATTACATACCGGAACGGTTTGCATTGTACTGTAAGGATACTAAGGACTGAAGGGATTAAAGGACTTTACAGAGGGGCAACTTCATCTTTTATGGGGGTAGCTTTTGAGAGTTCACTTCTTTTTGGCATGTATTCCCAGATGAAACAGTCGCTGCAGGGAAATGTGCAAAGTGCTGTGCCACAACCACAAATCATAATTCCATCTGCAGCTTTTGGTGGAGCAATGATCAGTTTTATACTATGCCCCTCAGAGCTGTTGAAGTGTAGGATGCAAGTTCAAGGCACAGACTCTTTGGTACCGATATCAAGTAGATATGCTGGCCCTCTTGATTGCGCCCTCAAAACTGTAAAAGAGGATGGGGTTAGAGGAATTTTTCGCGGAGGTTTTACAACATTTTTAAGAGAAGCTACTGGAAATGCAGTCTTTTTCACCGTTTATGAGTATGTTCGCTATCATATGCATTTACAACTGAAATCTGCTTCATCGGACCACAAGAACTTGATTGATGTGGGAGTTGGGATTGTTAGTGGTGGCCTTGGTGGTATAGCTGTATGCATCTTCACAATTTGGCAATCTTGTATAATACACATGTTTCACATCTTATTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005290 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015238 GO:0015318 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0089709 GO:0098655 GO:0098656 GO:1901474 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

246

Amino Acids

26.83

Weight (kDa)

9.04

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 96	1.7e-22	Mitochondrial carrier protein
Mito_carr	PF00153	111 - 196	3.6e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33820 AT2G33820 AT2G33820 AT2G33820
fragaria_vesca	FvH4_3g08870 FvH4_3g08870 FvH4_3g08870
malus_domestica	MD05G1312200.v1.1 MD10G1291700.v1.1
prunus_persica	Prupe.4G050500_v2.0.a1 Prupe.4G050500_v2.0.a1
pyrus_communis	pycom05g28810 pycom10g24390
rosa_chinensis	RchiOBHm_Chr5g0008881
rosa_laevigata	RLG00000031613
rosa_multiflora	Rmu_sc0004677.1_g000009 Rmu_sc0037535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067120 Rroxscaffold_1G00067740
rosa_rugosa	Rorug04G0440000 Rorug04G0440000
rosa_samantha	Rh5AG068400 Rh5BG065300 Rh5CG076500 Rh5DG064200
rosa_wichuraiana	Rw5G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	424
AccB1I	GGYRCC	2 cut(s)	65, 424
AccII	CGCG	1 cut(s)	507
AciI	CCGC	1 cut(s)	507
AcoI	YGGCCR	2 cut(s)	33, 70
AcsI	RAATTY	1 cut(s)	498
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	2 cut(s)	157, 426
AflIII	ACRYGT	1 cut(s)	717
AgsI	TTSAA	2 cut(s)	388, 407
AluBI	AGCT	6 cut(s)	12, 230, 338, 382, 536, 677
AluI	AGCT	6 cut(s)	12, 230, 338, 382, 536, 677
AlwNI	CAGNNNCTG	1 cut(s)	280
AoxI	GGCC	4 cut(s)	33, 70, 448, 661
ApeKI	GCWGC	2 cut(s)	280, 335
ApoI	RAATTY	1 cut(s)	498
Asp718I	GGTACC	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	464
AspS9I	GGNCC	2 cut(s)	449, 616
AsuHPI	GGTGA	2 cut(s)	106, 550
AvaII	GGWCC	1 cut(s)	616
BanI	GGYRCC	2 cut(s)	65, 424
BbvI	GCAGC	2 cut(s)	267, 347
BccI	CCATC	3 cut(s)	81, 337, 479
BciVI	GTATCC	1 cut(s)	159
BclI	TGATCA	1 cut(s)	354
BfmI	CTRYAG	3 cut(s)	117, 281, 333
BfuI	GTATCC	1 cut(s)	159
BisI	GCNGC	2 cut(s)	281, 336
BlsI	GCNGC	2 cut(s)	282, 337
Bme18I	GGWCC	1 cut(s)	616
BmgT120I	GGNCC	2 cut(s)	449, 616
BmiI	GGNNCC	2 cut(s)	67, 426
BmsI	GCATC	3 cut(s)	90, 387, 693
BsaAI	YACGTR	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	664
BsaWI	WCCGGW	1 cut(s)	138
Bse118I	RCCGGY	3 cut(s)	35, 47, 68
Bse1I	ACTGG	1 cut(s)	544
Bse3DI	GCAATG	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	664
BseGI	GGATG	3 cut(s)	73, 402, 490
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	544
BseXI	GCAGC	2 cut(s)	267, 347
Bsh1236I	CGCG	1 cut(s)	507
BshFI	GGCC	4 cut(s)	35, 72, 450, 663
BshNI	GGYRCC	2 cut(s)	65, 424
BsiSI	CCGG	5 cut(s)	15, 36, 48, 69, 139
BsnI	GGCC	4 cut(s)	35, 72, 450, 663
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	1 cut(s)	507
BspANI	GGCC	4 cut(s)	35, 72, 450, 663
BspCNI	CTCAG	1 cut(s)	389
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	67, 426
BspMAI	CTGCAG	2 cut(s)	285, 337
BspT107I	GGYRCC	2 cut(s)	65, 424
BsrDI	GCAATG	1 cut(s)	357
BsrFI	RCCGGY	3 cut(s)	35, 47, 68
BsrI	ACTGG	1 cut(s)	544
BssAI	RCCGGY	3 cut(s)	35, 47, 68
BssECI	CCNNGG	1 cut(s)	664
BssMI	GATC	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	664
Bst4CI	ACNGT	8 cut(s)	61, 88, 118, 146, 160, 276, 475, 562
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	5 cut(s)	37, 41, 45, 49, 448
BstDEI	CTNAG	2 cut(s)	170, 376
BstF5I	GGATG	3 cut(s)	73, 402, 490
BstFNI	CGCG	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNSI	RCATGY	2 cut(s)	259, 721
BstSFI	CTRYAG	3 cut(s)	117, 281, 333
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	2 cut(s)	267, 347
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	4 cut(s)	35, 72, 450, 663
BtsCI	GGATG	3 cut(s)	73, 402, 490
BtsIMutI	CAGTG	2 cut(s)	57, 114
Cac8I	GCNNGC	5 cut(s)	37, 41, 45, 49, 448
CaiI	CAGNNNCTG	1 cut(s)	280
CfoI	GCGC	1 cut(s)	464
Cfr10I	RCCGGY	3 cut(s)	35, 47, 68
Cfr13I	GGNCC	2 cut(s)	449, 616
Csp6I	GTAC	2 cut(s)	156, 425
CviAII	CATG	3 cut(s)	125, 256, 718
CviQI	GTAC	2 cut(s)	156, 425
DdeI	CTNAG	2 cut(s)	170, 376
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
EaeI	YGGCCR	2 cut(s)	33, 70
Eco130I	CCWWGG	1 cut(s)	664
Eco32I	GATATC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	432
EcoT14I	CCWWGG	1 cut(s)	664
EcoT22I	ATGCAT	2 cut(s)	591, 686
ErhI	CCWWGG	1 cut(s)	664
FaeI	CATG	3 cut(s)	128, 259, 721
FatI	CATG	3 cut(s)	124, 255, 717
FauNDI	CATATG	1 cut(s)	585
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	281, 336
FokI	GGATG	3 cut(s)	60, 409, 497
Fsp4HI	GCNGC	2 cut(s)	281, 336
GlaI	GCGC	1 cut(s)	463
GluI	GCNGC	2 cut(s)	281, 336
HaeIII	GGCC	4 cut(s)	35, 72, 450, 663
HapII	CCGG	5 cut(s)	15, 36, 48, 69, 139
HhaI	GCGC	1 cut(s)	464
Hin1II	CATG	3 cut(s)	128, 259, 721
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HinfI	GANTC	1 cut(s)	416
HpaII	CCGG	5 cut(s)	15, 36, 48, 69, 139
HphI	GGTGA	2 cut(s)	106, 550
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	2 cut(s)	379, 616
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	88, 173
HpyCH4III	ACNGT	8 cut(s)	61, 88, 118, 146, 160, 276, 475, 562
HpyCH4IV	ACGT	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	170, 376
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	128, 259, 721
HspAI	GCGC	1 cut(s)	462
KpnI	GGTACC	1 cut(s)	428
KroI	GCCGGC	2 cut(s)	35, 47
KroNI	GCCGGC	2 cut(s)	37, 49
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	17, 347
LpnPI	CCDG	9 cut(s)	28, 49, 61, 82, 152, 269, 278, 432, 525
Lsp1109I	GCAGC	2 cut(s)	267, 347
LweI	GCATC	3 cut(s)	90, 387, 693
MaeII	ACGT	1 cut(s)	30
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	2 cut(s)	109, 679
MluCI	AATT	3 cut(s)	324, 498, 693
MlyI	GAGTC	1 cut(s)	410
MnlI	CCTC	7 cut(s)	194, 385, 462, 475, 476, 488, 503
Mph1103I	ATGCAT	2 cut(s)	591, 686
MreI	CGCCGGCG	1 cut(s)	47
MroNI	GCCGGC	2 cut(s)	35, 47
MseI	TTAA	2 cut(s)	186, 527
MspI	CCGG	5 cut(s)	15, 36, 48, 69, 139
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	53
NaeI	GCCGGC	2 cut(s)	37, 49
NdeI	CATATG	1 cut(s)	585
NdeII	GATC	1 cut(s)	354
NgoMIV	GCCGGC	2 cut(s)	35, 47
NlaIII	CATG	3 cut(s)	128, 259, 721
NlaIV	GGNNCC	2 cut(s)	67, 426
NsiI	ATGCAT	2 cut(s)	591, 686
NspI	RCATGY	2 cut(s)	259, 721
PciI	ACATGT	1 cut(s)	717
PdiI	GCCGGC	2 cut(s)	37, 49
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	282, 337
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
Ppu21I	YACGTR	1 cut(s)	31
PscI	ACATGT	1 cut(s)	717
PspN4I	GGNNCC	2 cut(s)	67, 426
PspPI	GGNCC	2 cut(s)	449, 616
PstI	CTGCAG	2 cut(s)	285, 337
PstNI	CAGNNNCTG	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	2 cut(s)	157, 426
RsaNI	GTAC	2 cut(s)	156, 425
SaqAI	TTAA	2 cut(s)	186, 527
SatI	GCNGC	2 cut(s)	281, 336
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	2 cut(s)	449, 616
SchI	GAGTC	1 cut(s)	410
SetI	ASST	9 cut(s)	14, 33, 96, 232, 340, 384, 514, 538, 679
SfaNI	GCATC	3 cut(s)	90, 387, 693
SfcI	CTRYAG	3 cut(s)	117, 281, 333
SgrAI	CRCCGGYG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	616
Sse9I	AATT	3 cut(s)	324, 498, 693
SsiI	CCGC	1 cut(s)	507
StyI	CCWWGG	1 cut(s)	664
TaaI	ACNGT	8 cut(s)	61, 88, 118, 146, 160, 276, 475, 562
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	81
TasI	AATT	3 cut(s)	324, 498, 693
TatI	WGTACW	1 cut(s)	155
Tru1I	TTAA	2 cut(s)	186, 527
Tru9I	TTAA	2 cut(s)	186, 527
TscAI	CASTG	2 cut(s)	64, 121
TseI	GCWGC	2 cut(s)	280, 335
TspDTI	ATGAA	3 cut(s)	201, 284, 600
TspRI	CASTG	2 cut(s)	64, 121
Tth111I	GACNNNGTC	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	616
XapI	RAATTY	1 cut(s)	498
XceI	RCATGY	2 cut(s)	259, 721
Zsp2I	ATGCAT	2 cut(s)	591, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.