Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006741

Physical Location & Seq

Genomic Coordinates Forward (+)

26260854 .. 26262519

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24390.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCGGATAGTTCCGGTTACAAGGAGTACTTGGCAGGCTTGATTGCCGGCGTGGCCACCGTTGGAATCGGCCATCCCTTTGACACGGTCAAGGTAAAGATGCAAAAACACAACACTTCAGCACAAGGGATTACGTACAGGAATAGTTTGCATTGTACTGCAAGGATACTAAGGACTGAAGGGATTAAAGGACTTTACAGGGGGGCAACATCATCTTTCGTGGGAATGGCTTTTGAGAGTTCACTCCTTTTCGGCATGTATTCCCAGATGAAACAGTCACTGCAGGGAAGTGCACAAGGTGTAGGGCCACAGCCCCAGGTCATAATTCCATCTGCAGCTTATAGTGGAGCAGTCATCAGTTTTATATTATGCCCGTCGGAGCTTGTGAAGTGTAGGATGCAAATTCAAGGCACAGACTCTGTGGTTCCAATGTCCAGAAGATATGGCAGTCCTCTTGATTGTGCCCTTACAACTGTGAAAAATGATGGGGTCAGAGGAATTTTTCGAGGAGGTTTTACAACATTGCTAAGAGAAGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005290 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015238 GO:0015318 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0089709 GO:0098655 GO:0098656 GO:1901474 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

181

Amino Acids

19.3

Weight (kDa)

9.41

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33820 AT2G33820 AT2G33820 AT2G33820
fragaria_vesca	FvH4_3g08870 FvH4_3g08870 FvH4_3g08870
malus_domestica	MD05G1312200.v1.1 MD10G1291700.v1.1
prunus_persica	Prupe.4G050500_v2.0.a1 Prupe.4G050500_v2.0.a1
pyrus_communis	pycom05g28810 pycom10g24390
rosa_chinensis	RchiOBHm_Chr5g0008881
rosa_laevigata	RLG00000031613
rosa_multiflora	Rmu_sc0004677.1_g000009 Rmu_sc0037535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067120 Rroxscaffold_1G00067740
rosa_rugosa	Rorug04G0440000 Rorug04G0440000
rosa_samantha	Rh5AG068400 Rh5BG065300 Rh5CG076500 Rh5DG064200
rosa_wichuraiana	Rw5G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	2 cut(s)	54, 70
AcsI	RAATTY	2 cut(s)	402, 498
AcuI	CTGAAG	2 cut(s)	102, 198
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	3 cut(s)	29, 137, 157
AgsI	TTSAA	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	2 cut(s)	338, 382
AluI	AGCT	2 cut(s)	338, 382
Alw21I	GWGCWC	1 cut(s)	295
Alw44I	GTGCAC	1 cut(s)	291
AlwNI	CAGNNNCTG	2 cut(s)	280, 419
AoxI	GGCC	3 cut(s)	54, 70, 305
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	2 cut(s)	402, 498
AspS9I	GGNCC	1 cut(s)	305
BaeGI	GKGCMC	2 cut(s)	295, 466
BalI	TGGCCA	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	3 cut(s)	81, 337, 479
BciT130I	CCWGG	1 cut(s)	317
BciVI	GTATCC	1 cut(s)	159
BfmI	CTRYAG	2 cut(s)	281, 333
BfuI	GTATCC	1 cut(s)	159
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	2 cut(s)	90, 387
BsaAI	YACGTR	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	14
Bse118I	RCCGGY	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	2 cut(s)	73, 402
BseMI	GCAATG	1 cut(s)	521
BseRI	GAGGAG	1 cut(s)	522
BseSI	GKGCMC	2 cut(s)	295, 466
BseXI	GCAGC	1 cut(s)	347
BshFI	GGCC	3 cut(s)	56, 72, 307
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	15, 48
BsnI	GGCC	3 cut(s)	56, 72, 307
Bsp1286I	GDGCHC	2 cut(s)	295, 466
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	56, 72, 307
BspLI	GGNNCC	1 cut(s)	426
BspMAI	CTGCAG	2 cut(s)	285, 337
BsrDI	GCAATG	1 cut(s)	521
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	4 cut(s)	61, 88, 276, 475
BstBAI	YACGTR	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	37, 49
BstDEI	CTNAG	2 cut(s)	170, 527
BstF5I	GGATG	2 cut(s)	73, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	2 cut(s)	281, 333
BstSLI	GKGCMC	2 cut(s)	295, 466
BstSNI	TACGTA	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	347
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	56, 72, 307
BtsCI	GGATG	2 cut(s)	73, 402
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	37, 49
CaiI	CAGNNNCTG	2 cut(s)	280, 419
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	305
Csp6I	GTAC	3 cut(s)	28, 136, 156
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	8 cut(s)	39, 56, 72, 230, 307, 313, 338, 382
CviKI_1	RGCY	8 cut(s)	39, 56, 72, 230, 307, 313, 338, 382
CviQI	GTAC	3 cut(s)	28, 136, 156
DdeI	CTNAG	2 cut(s)	170, 527
DraIII	CACNNNGTG	1 cut(s)	299
EaeI	YGGCCR	2 cut(s)	54, 70
EciI	GGCGGA	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	135
Eco57I	CTGAAG	2 cut(s)	102, 198
EcoRII	CCWGG	1 cut(s)	315
FaeI	CATG	1 cut(s)	259
FaiI	YATR	6 cut(s)	257, 323, 342, 365, 370, 444
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	2 cut(s)	60, 409
Fsp4HI	GCNGC	1 cut(s)	336
GluI	GCNGC	1 cut(s)	336
HaeIII	GGCC	3 cut(s)	56, 72, 307
HapII	CCGG	2 cut(s)	15, 48
Hin1II	CATG	1 cut(s)	259
HinfI	GANTC	2 cut(s)	66, 416
HpaII	CCGG	2 cut(s)	15, 48
Hpy166II	GTNNAC	2 cut(s)	242, 293
Hpy188I	TCNGA	2 cut(s)	379, 494
Hpy188III	TCNNGA	2 cut(s)	435, 455
Hpy8I	GTNNAC	2 cut(s)	242, 293
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	4 cut(s)	61, 88, 276, 475
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	7 cut(s)	103, 151, 161, 283, 293, 335, 400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	170, 527
HpySE526I	ACGT	1 cut(s)	134
Hsp92II	CATG	1 cut(s)	259
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
LmnI	GCTCC	2 cut(s)	347, 379
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	2 cut(s)	90, 387
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	2 cut(s)	17, 276
MboII	GAAGA	1 cut(s)	450
MhlI	GDGCHC	2 cut(s)	295, 466
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	3 cut(s)	324, 402, 498
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	2 cut(s)	43, 357
MnlI	CCTC	4 cut(s)	462, 488, 500, 503
Mox20I	TGGCCA	1 cut(s)	56
MroNI	GCCGGC	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	56
MspI	CCGG	2 cut(s)	15, 48
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	53
NaeI	GCCGGC	1 cut(s)	49
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	1 cut(s)	276
NspI	RCATGY	1 cut(s)	259
PdiI	GCCGGC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	66
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
Ppu21I	YACGTR	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	305
PstI	CTGCAG	2 cut(s)	285, 337
PstNI	CAGNNNCTG	2 cut(s)	280, 419
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	3 cut(s)	29, 137, 157
RsaNI	GTAC	3 cut(s)	28, 136, 156
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	305
ScaI	AGTACT	1 cut(s)	29
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	2 cut(s)	295, 466
SetI	ASST	7 cut(s)	96, 137, 301, 321, 340, 384, 514
SfaNI	GCATC	2 cut(s)	90, 387
SfcI	CTRYAG	2 cut(s)	281, 333
SnaBI	TACGTA	1 cut(s)	135
Sse9I	AATT	3 cut(s)	324, 402, 498
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	4 cut(s)	61, 88, 276, 475
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	1 cut(s)	505
TasI	AATT	3 cut(s)	324, 402, 498
TatI	WGTACW	2 cut(s)	27, 155
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	276
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	276
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	285
Tth111I	GACNNNGTC	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	291
XapI	RAATTY	2 cut(s)	402, 498
XceI	RCATGY	1 cut(s)	259
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.