Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006741

Physical Location & Seq

Genomic Coordinates Forward (+)

38019004 .. 38021734

Gene Structure 2731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1291700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCGGATAGTTCCGGTTACAAGGAGTACTTGGCAGGCTTGATTGCGGGCGTGGCCACCGTTGGAATCGGCCATCCCTTTGACACCGTCAAGGTAAAGATGCAAAAACACAACACTTCAGCACAAGGGATTACGTACAGGAATAGTTTGCATTGTACTGCAAGGGTACTAAGGACTGAAGGGATTAAAGGACTTTACAGGGGGGCAACATCATCTTTTGTGGGAATGGCTTTTGAGAGTTCACTTCTTTTCGGCATGTATTCCCAGATGAAACAGTCACTGCAGGGAAGTGCACAAGGTGTAGGGCCACAGCCCCAAGTCATAATTCCGTCTGCAGCTTATAGTGGAGCAGTCATCAGTTTTATATTATGCCCGTCGGAGCTTGTGAAGTGTAGGATGCAAATTCAAGGCACAGACTCTGTGGTTCCAATGTCCAGAAGATATGGCAGTCCTCTTGATTGTGCCCTTACAACTGTGAAAAATGATGGGGTCAGAGGAATTTTTCGAGGAGGTTTTACAACATTGCTAAGAGAAGGTATTGGGAATTCAGTCTTTTTCAGTGTTTATGAGTATGTCCGCTATTACATGCATTTGCAACTGAGGTCTGCTTCACCCGACCACAGAAACTTGATTGACGTTGGAGTTGGGATTGCTAGTGGAGGCCTTGGTGGTATAGCTTTTTGGTTGGCTGTTCTACCCTTGGATGTGGCAAAAACCATAATTCAGACGACTCAAGATAAGAATTCTTCAAGAAATCCATTTCATATCCTGAGCTCGATTTACAGAAGTGCTGGATTGAAAGGATGCTATATTGGCTTGGGTCCTACTATTGTTCGGGCTTTTCCTGCTAATGCAGCCGCAATCGTCACCTGGGAGGTGGCCATAAAACTATTAGGCATCAAGCGCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005290 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015238 GO:0015318 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0089709 GO:0098655 GO:0098656 GO:1901474 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

304

Amino Acids

32.58

Weight (kDa)

9.64

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 96	1.4e-22	Mitochondrial carrier protein
Mito_carr	PF00153	111 - 196	1.1e-16	Mitochondrial carrier protein
Mito_carr	PF00153	217 - 299	2.3e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33820 AT2G33820 AT2G33820 AT2G33820
fragaria_vesca	FvH4_3g08870 FvH4_3g08870 FvH4_3g08870
malus_domestica	MD05G1312200.v1.1 MD10G1291700.v1.1
prunus_persica	Prupe.4G050500_v2.0.a1 Prupe.4G050500_v2.0.a1
pyrus_communis	pycom05g28810 pycom10g24390
rosa_chinensis	RchiOBHm_Chr5g0008881
rosa_laevigata	RLG00000031613
rosa_multiflora	Rmu_sc0004677.1_g000009 Rmu_sc0037535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067120 Rroxscaffold_1G00067740
rosa_rugosa	Rorug04G0440000 Rorug04G0440000
rosa_samantha	Rh5AG068400 Rh5BG065300 Rh5CG076500 Rh5DG064200
rosa_wichuraiana	Rw5G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	906
AciI	CCGC	4 cut(s)	5, 47, 577, 858
AcoI	YGGCCR	3 cut(s)	54, 70, 879
AcsI	RAATTY	4 cut(s)	402, 498, 544, 742
AcuI	CTGAAG	2 cut(s)	102, 198
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	4 cut(s)	29, 137, 157, 168
AgsI	TTSAA	3 cut(s)	407, 750, 799
AjnI	CCWGG	1 cut(s)	869
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AluBI	AGCT	4 cut(s)	338, 382, 677, 774
AluI	AGCT	4 cut(s)	338, 382, 677, 774
Alw21I	GWGCWC	2 cut(s)	295, 776
Alw44I	GTGCAC	1 cut(s)	291
AlwNI	CAGNNNCTG	2 cut(s)	280, 419
AoxI	GGCC	5 cut(s)	54, 70, 305, 661, 879
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	335, 854
ApoI	RAATTY	4 cut(s)	402, 498, 544, 742
AspLEI	GCGC	1 cut(s)	906
AspS9I	GGNCC	2 cut(s)	305, 821
AsuHPI	GGTGA	2 cut(s)	603, 859
AvaII	GGWCC	1 cut(s)	821
BaeGI	GKGCMC	2 cut(s)	295, 466
BalI	TGGCCA	2 cut(s)	56, 881
BanII	GRGCYC	1 cut(s)	776
Bbv12I	GWGCWC	2 cut(s)	295, 776
BbvI	GCAGC	2 cut(s)	347, 866
BccI	CCATC	2 cut(s)	81, 479
BciT130I	CCWGG	1 cut(s)	871
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	2 cut(s)	281, 333
BisI	GCNGC	3 cut(s)	336, 855, 858
BlsI	GCNGC	3 cut(s)	337, 856, 859
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	871
Bme18I	GGWCC	1 cut(s)	821
BmgT120I	GGNCC	2 cut(s)	305, 821
BmiI	GGNNCC	2 cut(s)	426, 822
BmrFI	CCNGG	1 cut(s)	871
BmsI	GCATC	4 cut(s)	90, 387, 794, 906
Bpu10I	CCTNAGC	1 cut(s)	770
BpuEI	CTTGAG	1 cut(s)	717
BsaAI	YACGTR	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	664, 699, 870
BsaWI	WCCGGW	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	871
BseDI	CCNNGG	3 cut(s)	664, 699, 870
BseGI	GGATG	4 cut(s)	73, 402, 709, 809
BseMI	GCAATG	1 cut(s)	521
BseMII	CTCAG	2 cut(s)	590, 761
BseRI	GAGGAG	1 cut(s)	522
BseSI	GKGCMC	2 cut(s)	295, 466
BseXI	GCAGC	2 cut(s)	347, 866
Bsh1236I	CGCG	1 cut(s)	906
BshFI	GGCC	5 cut(s)	56, 72, 307, 663, 881
BsiHKAI	GWGCWC	2 cut(s)	295, 776
BsiSI	CCGG	1 cut(s)	15
BsnI	GGCC	5 cut(s)	56, 72, 307, 663, 881
Bsp1286I	GDGCHC	3 cut(s)	295, 466, 776
BspACI	CCGC	4 cut(s)	5, 47, 577, 858
BspANI	GGCC	5 cut(s)	56, 72, 307, 663, 881
BspCNI	CTCAG	2 cut(s)	591, 762
BspFNI	CGCG	1 cut(s)	906
BspLI	GGNNCC	2 cut(s)	426, 822
BspMAI	CTGCAG	2 cut(s)	285, 337
BsrDI	GCAATG	1 cut(s)	521
BssECI	CCNNGG	3 cut(s)	664, 699, 870
BssT1I	CCWWGG	2 cut(s)	664, 699
Bst2UI	CCWGG	1 cut(s)	871
Bst4CI	ACNGT	4 cut(s)	61, 88, 276, 475
BstBAI	YACGTR	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	37, 49
BstDEI	CTNAG	4 cut(s)	170, 527, 599, 770
BstF5I	GGATG	4 cut(s)	73, 402, 709, 809
BstFNI	CGCG	1 cut(s)	906
BstHHI	GCGC	1 cut(s)	906
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 813, 845, 854, 903
BstNI	CCWGG	1 cut(s)	871
BstNSI	RCATGY	2 cut(s)	259, 589
BstSCI	CCNGG	1 cut(s)	869
BstSFI	CTRYAG	2 cut(s)	281, 333
BstSLI	GKGCMC	2 cut(s)	295, 466
BstSNI	TACGTA	1 cut(s)	135
BstUI	CGCG	1 cut(s)	906
BstV1I	GCAGC	2 cut(s)	347, 866
BsuRI	GGCC	5 cut(s)	56, 72, 307, 663, 881
BtsCI	GGATG	4 cut(s)	73, 402, 709, 809
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	2 cut(s)	278, 565
Cac8I	GCNNGC	2 cut(s)	37, 49
CaiI	CAGNNNCTG	2 cut(s)	280, 419
CfoI	GCGC	1 cut(s)	906
Cfr13I	GGNCC	2 cut(s)	305, 821
Csp6I	GTAC	4 cut(s)	28, 136, 156, 167
CviAII	CATG	2 cut(s)	256, 586
CviQI	GTAC	4 cut(s)	28, 136, 156, 167
DdeI	CTNAG	4 cut(s)	170, 527, 599, 770
DraIII	CACNNNGTG	1 cut(s)	299
EaeI	YGGCCR	3 cut(s)	54, 70, 879
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	774
Eco105I	TACGTA	1 cut(s)	135
Eco130I	CCWWGG	2 cut(s)	664, 699
Eco147I	AGGCCT	1 cut(s)	663
Eco24I	GRGCYC	1 cut(s)	776
Eco47I	GGWCC	1 cut(s)	821
Eco53kI	GAGCTC	1 cut(s)	774
Eco57I	CTGAAG	2 cut(s)	102, 198
EcoICRI	GAGCTC	1 cut(s)	774
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRI	GAATTC	2 cut(s)	544, 742
EcoRII	CCWGG	1 cut(s)	869
EcoT14I	CCWWGG	2 cut(s)	664, 699
EcoT22I	ATGCAT	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	776
ErhI	CCWWGG	2 cut(s)	664, 699
FaeI	CATG	2 cut(s)	259, 589
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	2 cut(s)	255, 585
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	336, 855, 858
FokI	GGATG	4 cut(s)	60, 409, 716, 816
FriOI	GRGCYC	1 cut(s)	776
Fsp4HI	GCNGC	3 cut(s)	336, 855, 858
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	905
GluI	GCNGC	3 cut(s)	336, 855, 858
HaeIII	GGCC	5 cut(s)	56, 72, 307, 663, 881
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	1 cut(s)	906
Hin1II	CATG	2 cut(s)	259, 589
Hin6I	GCGC	1 cut(s)	904
HinP1I	GCGC	1 cut(s)	904
HinfI	GANTC	3 cut(s)	66, 416, 730
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	2 cut(s)	603, 859
Hpy166II	GTNNAC	2 cut(s)	242, 293
Hpy188I	TCNGA	3 cut(s)	379, 494, 726
Hpy188III	TCNNGA	5 cut(s)	435, 455, 734, 750, 769
Hpy8I	GTNNAC	2 cut(s)	242, 293
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	2 cut(s)	173, 527
HpyCH4III	ACNGT	4 cut(s)	61, 88, 276, 475
HpyCH4IV	ACGT	2 cut(s)	134, 636
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 813, 845, 854, 903
HpyF3I	CTNAG	4 cut(s)	170, 527, 599, 770
HpySE526I	ACGT	2 cut(s)	134, 636
Hsp92II	CATG	2 cut(s)	259, 589
HspAI	GCGC	1 cut(s)	904
LmnI	GCTCC	2 cut(s)	347, 379
Lsp1109I	GCAGC	2 cut(s)	347, 866
LweI	GCATC	4 cut(s)	90, 387, 794, 906
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	2 cut(s)	134, 636
MaeIII	GTNAC	3 cut(s)	17, 276, 865
MboII	GAAGA	2 cut(s)	450, 738
MhlI	GDGCHC	3 cut(s)	295, 466, 776
MlsI	TGGCCA	2 cut(s)	56, 881
MluCI	AATT	6 cut(s)	324, 402, 498, 544, 720, 742
MluNI	TGGCCA	2 cut(s)	56, 881
MlyI	GAGTC	2 cut(s)	410, 724
MmeI	TCCRAC	3 cut(s)	43, 357, 619
MnlI	CCTC	7 cut(s)	462, 488, 500, 503, 594, 653, 868
Mox20I	TGGCCA	2 cut(s)	56, 881
Mph1103I	ATGCAT	1 cut(s)	591
MscI	TGGCCA	2 cut(s)	56, 881
MseI	TTAA	1 cut(s)	186
Msp20I	TGGCCA	2 cut(s)	56, 881
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	871
MvaI	CCWGG	1 cut(s)	871
MvnI	CGCG	1 cut(s)	906
MwoI	GCNNNNNNNGC	5 cut(s)	53, 813, 845, 854, 903
NlaIII	CATG	2 cut(s)	259, 589
NlaIV	GGNNCC	2 cut(s)	426, 822
NmuCI	GTSAC	2 cut(s)	276, 865
NsiI	ATGCAT	1 cut(s)	591
NspI	RCATGY	2 cut(s)	259, 589
PceI	AGGCCT	1 cut(s)	663
PfeI	GAWTC	1 cut(s)	66
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	337, 856, 859
PleI	GAGTC	2 cut(s)	410, 724
PpsI	GAGTC	2 cut(s)	410, 724
Ppu21I	YACGTR	1 cut(s)	135
PpuMI	RGGWCCY	1 cut(s)	821
Psp124BI	GAGCTC	1 cut(s)	776
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	869
PspGI	CCWGG	1 cut(s)	869
PspN4I	GGNNCC	2 cut(s)	426, 822
PspPI	GGNCC	2 cut(s)	305, 821
PspPPI	RGGWCCY	1 cut(s)	821
PstI	CTGCAG	2 cut(s)	285, 337
PstNI	CAGNNNCTG	2 cut(s)	280, 419
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	4 cut(s)	29, 137, 157, 168
RsaNI	GTAC	4 cut(s)	28, 136, 156, 167
SacI	GAGCTC	1 cut(s)	776
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	3 cut(s)	336, 855, 858
Sau96I	GGNCC	2 cut(s)	305, 821
ScaI	AGTACT	1 cut(s)	29
SchI	GAGTC	2 cut(s)	410, 724
ScrFI	CCNGG	1 cut(s)	871
SduI	GDGCHC	3 cut(s)	295, 466, 776
SfaNI	GCATC	4 cut(s)	90, 387, 794, 906
SfcI	CTRYAG	2 cut(s)	281, 333
SinI	GGWCC	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	732
SmoI	CTYRAG	1 cut(s)	732
SnaBI	TACGTA	1 cut(s)	135
Sse9I	AATT	6 cut(s)	324, 402, 498, 544, 720, 742
SseBI	AGGCCT	1 cut(s)	663
SsiI	CCGC	4 cut(s)	5, 47, 577, 858
SspMI	CTAG	1 cut(s)	654
SstI	GAGCTC	1 cut(s)	776
StuI	AGGCCT	1 cut(s)	663
StyD4I	CCNGG	1 cut(s)	869
StyI	CCWWGG	2 cut(s)	664, 699
TaaI	ACNGT	4 cut(s)	61, 88, 276, 475
TaiI	ACGT	2 cut(s)	137, 639
TaqI	TCGA	2 cut(s)	505, 776
TasI	AATT	6 cut(s)	324, 402, 498, 544, 720, 742
TatI	WGTACW	2 cut(s)	27, 155
TauI	GCSGC	1 cut(s)	860
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	285, 565
TseFI	GTSAC	2 cut(s)	276, 865
TseI	GCWGC	2 cut(s)	335, 854
Tsp45I	GTSAC	2 cut(s)	276, 865
TspDTI	ATGAA	2 cut(s)	284, 752
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	285, 565
Tth111I	GACNNNGTC	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	821
XapI	RAATTY	4 cut(s)	402, 498, 544, 742
XceI	RCATGY	2 cut(s)	259, 589
XspI	CTAG	1 cut(s)	654
ZrmI	AGTACT	1 cut(s)	29
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.