Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006741

Physical Location & Seq

Genomic Coordinates Forward (+)

29397120 .. 29399202

Gene Structure 2083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28810.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCGGACAACTCTGGTTACAAGGAGTACGTTGCGGGCTTGATCGCCGGCGTGGCCACCGTTGGAATCGGCCATCCCTTTGACACCGTCAAGGTTAAGATGCAAAAACACAACACTTCAGCACACGGGATTACGTACAGGAATAGTTTGCATTGCACTGCAAGGATACTAAGGACTGAAGGTATTAAAGGACTTTACAGAGGGGCAACATCATCTTTTGTGGGGATGGCTTTTGAGAGTTCACTTGTTTTCGGCATGTATTCCCAGATCAAACAGTCACTGCAGGGAAGTGCCCAAGGTGCAGGTCCACAGCCCCAAGTCATAATTCCATCTGCTGCTTTTAGTGGATCAGTCATCAGTTTTATATTATGCCCCTCGGAGCTGGTGAAGTGTAGGATGCAAATTCAAGGCACGGACTCTATGGTCCCAATGTCTAGAAGATATGGCAATCCTCTTGATTGTGTCCTTACAACTGTGAAAAATGATGGGGTTAGAGGAATTTTTCGAGGAGGTTTTACGACATTGTTAAGAGAATGTATTGGAAATGCGGTCTTCTTCAGCGTTTATGAGTATGTCCGCTATCACATGCATTTACAATTGAAATCTGCTTCAACTGACCACAGAAACTTGATTGACGTGGGAGTTGGGATTGCTAGTGGTGGCCTTGGTGGTATAGCATTTTGGTTGGCTGTTCTACCCTTGGACGTGGCAAAAACCATAATTCAGACGACTACAGATAAGAACGCTGCAAGAAATCCATTTCAAATCTTGAGCTCGATTTACAGAAGGGCTGGATTGAAAGGATGCTATATTGGCTTGGGTCCTACTATTATTCGGGCTTTTCCTGCTAATGCAGCGGCAATCGTCACCTGGGAGTTGGCCATAAAACTATTAGGCATCAAACGCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005290 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015238 GO:0015318 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0089709 GO:0098655 GO:0098656 GO:1901474 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

304

Amino Acids

32.66

Weight (kDa)

9.67

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33820 AT2G33820 AT2G33820 AT2G33820
fragaria_vesca	FvH4_3g08870 FvH4_3g08870 FvH4_3g08870
malus_domestica	MD05G1312200.v1.1 MD10G1291700.v1.1
prunus_persica	Prupe.4G050500_v2.0.a1 Prupe.4G050500_v2.0.a1
pyrus_communis	pycom05g28810 pycom10g24390
rosa_chinensis	RchiOBHm_Chr5g0008881
rosa_laevigata	RLG00000031613
rosa_multiflora	Rmu_sc0004677.1_g000009 Rmu_sc0037535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067120 Rroxscaffold_1G00067740
rosa_rugosa	Rorug04G0440000 Rorug04G0440000
rosa_samantha	Rh5AG068400 Rh5BG065300 Rh5CG076500 Rh5DG064200
rosa_wichuraiana	Rw5G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	293
AccII	CGCG	1 cut(s)	906
AciI	CCGC	5 cut(s)	5, 35, 548, 577, 857
AclWI	GGATC	1 cut(s)	355
AcoI	YGGCCR	3 cut(s)	54, 70, 879
AcsI	RAATTY	2 cut(s)	402, 498
AcuI	CTGAAG	3 cut(s)	102, 198, 541
AfaI	GTAC	2 cut(s)	29, 137
AgsI	TTSAA	5 cut(s)	407, 601, 612, 764, 799
AjiI	CACGTC	2 cut(s)	637, 706
AjnI	CCWGG	1 cut(s)	869
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AluBI	AGCT	2 cut(s)	382, 774
AluI	AGCT	2 cut(s)	382, 774
Alw21I	GWGCWC	1 cut(s)	776
AlwI	GGATC	1 cut(s)	355
AlwNI	CAGNNNCTG	1 cut(s)	280
AoxI	GGCC	4 cut(s)	54, 70, 661, 879
ApeKI	GCWGC	3 cut(s)	335, 746, 854
ApoI	RAATTY	2 cut(s)	402, 498
AspS9I	GGNCC	3 cut(s)	305, 424, 821
AsuHPI	GGTGA	2 cut(s)	397, 859
AvaII	GGWCC	3 cut(s)	305, 424, 821
BaeGI	GKGCMC	1 cut(s)	295
BalI	TGGCCA	2 cut(s)	56, 881
BanII	GRGCYC	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	544
Bbv12I	GWGCWC	1 cut(s)	776
BbvI	GCAGC	3 cut(s)	322, 733, 866
BccI	CCATC	4 cut(s)	81, 220, 337, 479
BciT130I	CCWGG	1 cut(s)	871
BciVI	GTATCC	1 cut(s)	159
BfaI	CTAG	2 cut(s)	435, 654
BfmI	CTRYAG	2 cut(s)	281, 732
BfuAI	ACCTGC	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	159
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	4 cut(s)	336, 747, 855, 858
BlsI	GCNGC	4 cut(s)	337, 748, 856, 859
Bme1390I	CCNGG	1 cut(s)	871
Bme18I	GGWCC	3 cut(s)	305, 424, 821
BmgBI	CACGTC	2 cut(s)	637, 706
BmgT120I	GGNCC	3 cut(s)	305, 424, 821
BmiI	GGNNCC	2 cut(s)	426, 822
BmrFI	CCNGG	1 cut(s)	871
BmsI	GCATC	4 cut(s)	90, 387, 794, 906
BpiI	GAAGAC	1 cut(s)	544
BpuEI	CTTGAG	1 cut(s)	790
BsaAI	YACGTR	1 cut(s)	135
BsaJI	CCNNGG	5 cut(s)	295, 375, 664, 699, 870
Bse118I	RCCGGY	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	871
BseDI	CCNNGG	5 cut(s)	295, 375, 664, 699, 870
BseGI	GGATG	4 cut(s)	73, 231, 402, 809
BseMI	GCAATG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	522
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	3 cut(s)	322, 733, 866
BsgI	GTGCAG	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	906
BshFI	GGCC	4 cut(s)	56, 72, 663, 881
BsiHKAI	GWGCWC	1 cut(s)	776
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	4 cut(s)	56, 72, 663, 881
Bsp1286I	GDGCHC	2 cut(s)	295, 776
Bsp143I	GATC	3 cut(s)	42, 267, 347
BspACI	CCGC	5 cut(s)	5, 35, 548, 577, 857
BspANI	GGCC	4 cut(s)	56, 72, 663, 881
BspFNI	CGCG	1 cut(s)	906
BspLI	GGNNCC	2 cut(s)	426, 822
BspMAI	CTGCAG	1 cut(s)	285
BspMI	ACCTGC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	5 cut(s)	295, 375, 664, 699, 870
BssMI	GATC	3 cut(s)	42, 267, 347
BssT1I	CCWWGG	3 cut(s)	295, 664, 699
Bst2UI	CCWGG	1 cut(s)	871
Bst4CI	ACNGT	4 cut(s)	61, 88, 276, 475
BstBAI	YACGTR	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	37, 49
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	4 cut(s)	73, 231, 402, 809
BstFNI	CGCG	1 cut(s)	906
BstKTI	GATC	3 cut(s)	45, 270, 350
BstMBI	GATC	3 cut(s)	42, 267, 347
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 299, 813, 845, 854, 903
BstNI	CCWGG	1 cut(s)	871
BstNSI	RCATGY	2 cut(s)	259, 589
BstSCI	CCNGG	1 cut(s)	869
BstSFI	CTRYAG	2 cut(s)	281, 732
BstSLI	GKGCMC	1 cut(s)	295
BstSNI	TACGTA	1 cut(s)	135
BstUI	CGCG	1 cut(s)	906
BstV1I	GCAGC	3 cut(s)	322, 733, 866
BstV2I	GAAGAC	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	4 cut(s)	56, 72, 663, 881
BtrI	CACGTC	2 cut(s)	637, 706
BtsCI	GGATG	4 cut(s)	73, 231, 402, 809
BtsI	GCAGTG	2 cut(s)	156, 278
BtsIMutI	CAGTG	2 cut(s)	156, 278
BveI	ACCTGC	1 cut(s)	293
Cac8I	GCNNGC	2 cut(s)	37, 49
CaiI	CAGNNNCTG	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	3 cut(s)	305, 424, 821
Csp6I	GTAC	2 cut(s)	28, 136
CviAII	CATG	2 cut(s)	256, 586
CviQI	GTAC	2 cut(s)	28, 136
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	3 cut(s)	44, 269, 349
DpnII	GATC	3 cut(s)	42, 267, 347
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
EaeI	YGGCCR	3 cut(s)	54, 70, 879
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	774
Eco105I	TACGTA	1 cut(s)	135
Eco130I	CCWWGG	3 cut(s)	295, 664, 699
Eco24I	GRGCYC	1 cut(s)	776
Eco47I	GGWCC	3 cut(s)	305, 424, 821
Eco53kI	GAGCTC	1 cut(s)	774
Eco57I	CTGAAG	3 cut(s)	102, 198, 541
EcoICRI	GAGCTC	1 cut(s)	774
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRII	CCWGG	1 cut(s)	869
EcoT14I	CCWWGG	3 cut(s)	295, 664, 699
EcoT22I	ATGCAT	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	776
ErhI	CCWWGG	3 cut(s)	295, 664, 699
FaeI	CATG	2 cut(s)	259, 589
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	2 cut(s)	255, 585
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	4 cut(s)	336, 747, 855, 858
FokI	GGATG	4 cut(s)	60, 238, 409, 816
FriOI	GRGCYC	1 cut(s)	776
Fsp4HI	GCNGC	4 cut(s)	336, 747, 855, 858
FspBI	CTAG	2 cut(s)	435, 654
GluI	GCNGC	4 cut(s)	336, 747, 855, 858
HaeIII	GGCC	4 cut(s)	56, 72, 663, 881
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	2 cut(s)	259, 589
HinfI	GANTC	2 cut(s)	66, 416
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	2 cut(s)	397, 859
Hpy166II	GTNNAC	2 cut(s)	242, 308
Hpy188I	TCNGA	2 cut(s)	379, 726
Hpy188III	TCNNGA	3 cut(s)	435, 455, 769
Hpy8I	GTNNAC	2 cut(s)	242, 308
HpyAV	CCTTC	2 cut(s)	173, 780
HpyCH4III	ACNGT	4 cut(s)	61, 88, 276, 475
HpyCH4IV	ACGT	4 cut(s)	30, 134, 636, 705
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 299, 813, 845, 854, 903
HpyF3I	CTNAG	1 cut(s)	170
HpySE526I	ACGT	4 cut(s)	30, 134, 636, 705
Hsp92II	CATG	2 cut(s)	259, 589
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	42, 267, 347
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	3 cut(s)	322, 733, 866
LweI	GCATC	4 cut(s)	90, 387, 794, 906
MaeI	CTAG	2 cut(s)	435, 654
MaeII	ACGT	4 cut(s)	30, 134, 636, 705
MaeIII	GTNAC	3 cut(s)	17, 276, 865
MalI	GATC	3 cut(s)	44, 269, 349
MboI	GATC	3 cut(s)	42, 267, 347
MboII	GAAGA	3 cut(s)	450, 544, 547
MfeI	CAATTG	1 cut(s)	596
MhlI	GDGCHC	2 cut(s)	295, 776
MlsI	TGGCCA	2 cut(s)	56, 881
MluCI	AATT	5 cut(s)	324, 402, 498, 596, 720
MluNI	TGGCCA	2 cut(s)	56, 881
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	6 cut(s)	194, 385, 462, 488, 500, 503
Mox20I	TGGCCA	2 cut(s)	56, 881
Mph1103I	ATGCAT	1 cut(s)	591
MreI	CGCCGGCG	1 cut(s)	47
MroNI	GCCGGC	1 cut(s)	47
MscI	TGGCCA	2 cut(s)	56, 881
MseI	TTAA	3 cut(s)	96, 186, 527
Msp20I	TGGCCA	2 cut(s)	56, 881
MspA1I	CMGCKG	1 cut(s)	857
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	871
MunI	CAATTG	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	871
MvnI	CGCG	1 cut(s)	906
MwoI	GCNNNNNNNGC	6 cut(s)	53, 299, 813, 845, 854, 903
NaeI	GCCGGC	1 cut(s)	49
NdeII	GATC	3 cut(s)	42, 267, 347
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	2 cut(s)	259, 589
NlaIV	GGNNCC	2 cut(s)	426, 822
NmuCI	GTSAC	2 cut(s)	276, 865
NsiI	ATGCAT	1 cut(s)	591
NspI	RCATGY	2 cut(s)	259, 589
PdiI	GCCGGC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	66
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	4 cut(s)	337, 748, 856, 859
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
Ppu21I	YACGTR	1 cut(s)	135
PpuMI	RGGWCCY	1 cut(s)	821
Psp124BI	GAGCTC	1 cut(s)	776
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	869
PspGI	CCWGG	1 cut(s)	869
PspN4I	GGNNCC	2 cut(s)	426, 822
PspPI	GGNCC	3 cut(s)	305, 424, 821
PspPPI	RGGWCCY	1 cut(s)	821
PstI	CTGCAG	1 cut(s)	285
PstNI	CAGNNNCTG	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	2 cut(s)	29, 137
RsaNI	GTAC	2 cut(s)	28, 136
SacI	GAGCTC	1 cut(s)	776
SaqAI	TTAA	3 cut(s)	96, 186, 527
SatI	GCNGC	4 cut(s)	336, 747, 855, 858
Sau3AI	GATC	3 cut(s)	42, 267, 347
Sau96I	GGNCC	3 cut(s)	305, 424, 821
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	871
SduI	GDGCHC	2 cut(s)	295, 776
SfaNI	GCATC	4 cut(s)	90, 387, 794, 906
SfcI	CTRYAG	2 cut(s)	281, 732
SgrAI	CRCCGGYG	1 cut(s)	47
SinI	GGWCC	3 cut(s)	305, 424, 821
SmlI	CTYRAG	1 cut(s)	769
SmoI	CTYRAG	1 cut(s)	769
SnaBI	TACGTA	1 cut(s)	135
Sse9I	AATT	5 cut(s)	324, 402, 498, 596, 720
SsiI	CCGC	5 cut(s)	5, 35, 548, 577, 857
SspMI	CTAG	2 cut(s)	435, 654
SstI	GAGCTC	1 cut(s)	776
StyD4I	CCNGG	1 cut(s)	869
StyI	CCWWGG	3 cut(s)	295, 664, 699
TaaI	ACNGT	4 cut(s)	61, 88, 276, 475
TaiI	ACGT	4 cut(s)	33, 137, 639, 708
TaqI	TCGA	2 cut(s)	505, 776
TasI	AATT	5 cut(s)	324, 402, 498, 596, 720
TauI	GCSGC	1 cut(s)	860
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	3 cut(s)	96, 186, 527
Tru9I	TTAA	3 cut(s)	96, 186, 527
TscAI	CASTG	2 cut(s)	163, 285
TseFI	GTSAC	2 cut(s)	276, 865
TseI	GCWGC	3 cut(s)	335, 746, 854
Tsp45I	GTSAC	2 cut(s)	276, 865
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	2 cut(s)	163, 285
Tth111I	GACNNNGTC	1 cut(s)	86
VpaK11BI	GGWCC	3 cut(s)	305, 424, 821
XapI	RAATTY	2 cut(s)	402, 498
XbaI	TCTAGA	1 cut(s)	434
XceI	RCATGY	2 cut(s)	259, 589
XspI	CTAG	2 cut(s)	435, 654
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.