Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006741

Physical Location & Seq

Genomic Coordinates Forward (+)

89002256 .. 89004525

Gene Structure 2270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGGGATAGCTCCGGCTACAAGGAATACGTGGCCGGCTTGCTCGCCGGTGTTGCCACTGTTGGCACCGGCCATCCCTTCGACACCGTCAAGGTGAAGATGCAAATGCACAACACTGTAGAACATGGGATTACATACCGGAACGGTTTGCATTGTACTGTAAGGATACTAAGGACTGAAGGGATTAAAGGACTTTACAGAGGGGCAACTTCATCTTTTATGGGGGTAGCTTTTGAGAGTTCGCTTCTTTTTGGCATGTATTCCCAGATGAAACAGTCGCTGCAGGGAAATGTGCAAAGTGCTGTGCCACAACCACAAATCATAATTCCATCTGCAGCTTTTGGTGGAGCAATGATCAGTTTTATACTATGCCCCTCAGAGCTGGTGAAGGTAAAAGGACTTGGATGGTTTCTAGATTGGAAAAGTTGTTTCTCCCTGTATGCTTATTACACCGACCTTTTCCAGTGTAGGATGCAAGTTCAAGGCACAGACTCTTTGATACCGATATCAAGTAGATATGCTGGCCCTCTTGATTGCGCCCTTAAAACTGTAAAAGAGGATGGGGTTAGAGGAATTTTTCGCGGAGGTTTTACAACGTTTTTAAGAGAAGCTACTGGAAATGCAGTCTTTTTCACCGTTTATGAGTATGTTCGCTATCATATGCATTTACAACTGCAATCTGCTTCATCGGACCACAAGAACTTGATTGACGTGGGAGTTGGGATTGTTAGTGGTGGCCTTGGTGGTATAGCTTTTTGGTCTGCTGTGTTGCCCTTGGATGTTGCGAAGACTATAATTCAGACATCTGCAGATAAGAACTCTACAAGAAATCCATTTCAAATCTTAAGCTCAATATACAGAATGGCTGGATTGAAAGGATGCTATACAGGTCTGGGTCCTACAATAGTTAGGGCCTTTCCTGCTAATGCGGCGGCAATTGTCAGCTGGGAAATTGCCATAAAACTATTAGGCATCCAACGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005290 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015238 GO:0015318 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0089709 GO:0098655 GO:0098656 GO:1901474 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

328

Amino Acids

35.75

Weight (kDa)

9.23

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 96	3.1e-22	Mitochondrial carrier protein
Mito_carr	PF00153	148 - 221	1.5e-12	Mitochondrial carrier protein
Mito_carr	PF00153	242 - 323	2.2e-16	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33820 AT2G33820 AT2G33820 AT2G33820
fragaria_vesca	FvH4_3g08870 FvH4_3g08870 FvH4_3g08870
malus_domestica	MD05G1312200.v1.1 MD10G1291700.v1.1
prunus_persica	Prupe.4G050500_v2.0.a1 Prupe.4G050500_v2.0.a1
pyrus_communis	pycom05g28810 pycom10g24390
rosa_chinensis	RchiOBHm_Chr5g0008881
rosa_laevigata	RLG00000031613
rosa_multiflora	Rmu_sc0004677.1_g000009 Rmu_sc0037535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00067120 Rroxscaffold_1G00067740
rosa_rugosa	Rorug04G0440000 Rorug04G0440000
rosa_samantha	Rh5AG068400 Rh5BG065300 Rh5CG076500 Rh5DG064200
rosa_wichuraiana	Rw5G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AccII	CGCG	1 cut(s)	582
AciI	CCGC	3 cut(s)	582, 929, 932
AclI	AACGTT	1 cut(s)	596
AcoI	YGGCCR	2 cut(s)	33, 70
AcsI	RAATTY	1 cut(s)	573
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	157
AflII	CTTAAG	1 cut(s)	844
AgsI	TTSAA	3 cut(s)	482, 839, 874
AjiI	CACGTC	1 cut(s)	712
AluBI	AGCT	8 cut(s)	12, 230, 338, 382, 611, 752, 849, 945
AluI	AGCT	8 cut(s)	12, 230, 338, 382, 611, 752, 849, 945
AlwNI	CAGNNNCTG	1 cut(s)	280
AoxI	GGCC	5 cut(s)	33, 70, 523, 736, 912
ApeKI	GCWGC	2 cut(s)	280, 335
ApoI	RAATTY	1 cut(s)	573
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	4 cut(s)	524, 691, 896, 912
AsuHPI	GGTGA	3 cut(s)	106, 397, 625
AvaII	GGWCC	2 cut(s)	691, 896
BanI	GGYRCC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	794
BbvI	GCAGC	2 cut(s)	267, 347
BccI	CCATC	4 cut(s)	81, 337, 399, 554
BciVI	GTATCC	1 cut(s)	159
BclI	TGATCA	1 cut(s)	354
BfaI	CTAG	1 cut(s)	413
BfmI	CTRYAG	4 cut(s)	117, 281, 333, 807
BfrI	CTTAAG	1 cut(s)	844
BfuI	GTATCC	1 cut(s)	159
BisI	GCNGC	4 cut(s)	281, 336, 930, 933
BlsI	GCNGC	4 cut(s)	282, 337, 931, 934
Bme18I	GGWCC	2 cut(s)	691, 896
BmgBI	CACGTC	1 cut(s)	712
BmgT120I	GGNCC	4 cut(s)	524, 691, 896, 912
BmiI	GGNNCC	2 cut(s)	67, 897
BmsI	GCATC	4 cut(s)	90, 462, 869, 981
BpiI	GAAGAC	1 cut(s)	794
BsaAI	YACGTR	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	739, 774
BsaWI	WCCGGW	1 cut(s)	138
Bse118I	RCCGGY	3 cut(s)	35, 47, 68
Bse1I	ACTGG	2 cut(s)	463, 619
Bse3DI	GCAATG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	739, 774
BseGI	GGATG	7 cut(s)	73, 410, 477, 565, 784, 884, 972
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	463, 619
BseXI	GCAGC	2 cut(s)	267, 347
BseYI	CCCAGC	1 cut(s)	945
Bsh1236I	CGCG	1 cut(s)	582
BshFI	GGCC	5 cut(s)	35, 72, 525, 738, 914
BshNI	GGYRCC	1 cut(s)	65
BsiSI	CCGG	5 cut(s)	15, 36, 48, 69, 139
BsnI	GGCC	5 cut(s)	35, 72, 525, 738, 914
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	3 cut(s)	582, 929, 932
BspANI	GGCC	5 cut(s)	35, 72, 525, 738, 914
BspCNI	CTCAG	1 cut(s)	389
BspFNI	CGCG	1 cut(s)	582
BspLI	GGNNCC	2 cut(s)	67, 897
BspMAI	CTGCAG	3 cut(s)	285, 337, 811
BspT107I	GGYRCC	1 cut(s)	65
BspTI	CTTAAG	1 cut(s)	844
BsrDI	GCAATG	1 cut(s)	357
BsrFI	RCCGGY	3 cut(s)	35, 47, 68
BsrI	ACTGG	2 cut(s)	463, 619
BssAI	RCCGGY	3 cut(s)	35, 47, 68
BssECI	CCNNGG	2 cut(s)	739, 774
BssMI	GATC	1 cut(s)	354
BssT1I	CCWWGG	2 cut(s)	739, 774
Bst4CI	ACNGT	8 cut(s)	61, 88, 118, 146, 160, 276, 550, 637
BstAFI	CTTAAG	1 cut(s)	844
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	4 cut(s)	37, 41, 45, 523
BstDEI	CTNAG	2 cut(s)	170, 376
BstF5I	GGATG	7 cut(s)	73, 410, 477, 565, 784, 884, 972
BstFNI	CGCG	1 cut(s)	582
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 920, 929
BstNSI	RCATGY	1 cut(s)	259
BstSFI	CTRYAG	4 cut(s)	117, 281, 333, 807
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	2 cut(s)	267, 347
BstV2I	GAAGAC	1 cut(s)	794
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	5 cut(s)	35, 72, 525, 738, 914
BtrI	CACGTC	1 cut(s)	712
BtsCI	GGATG	7 cut(s)	73, 410, 477, 565, 784, 884, 972
BtsIMutI	CAGTG	3 cut(s)	57, 114, 470
Cac8I	GCNNGC	4 cut(s)	37, 41, 45, 523
CaiI	CAGNNNCTG	1 cut(s)	280
CfoI	GCGC	1 cut(s)	539
Cfr10I	RCCGGY	3 cut(s)	35, 47, 68
Cfr13I	GGNCC	4 cut(s)	524, 691, 896, 912
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	2 cut(s)	125, 256
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	2 cut(s)	170, 376
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
EaeI	YGGCCR	2 cut(s)	33, 70
Eco130I	CCWWGG	2 cut(s)	739, 774
Eco32I	GATATC	1 cut(s)	507
Eco47I	GGWCC	2 cut(s)	691, 896
Eco57I	CTGAAG	1 cut(s)	198
EcoO109I	RGGNCCY	2 cut(s)	896, 912
EcoRV	GATATC	1 cut(s)	507
EcoT14I	CCWWGG	2 cut(s)	739, 774
EcoT22I	ATGCAT	1 cut(s)	666
ErhI	CCWWGG	2 cut(s)	739, 774
FaeI	CATG	2 cut(s)	128, 259
FatI	CATG	2 cut(s)	124, 255
FauNDI	CATATG	1 cut(s)	660
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	4 cut(s)	281, 336, 930, 933
FokI	GGATG	7 cut(s)	60, 417, 484, 572, 791, 891, 959
Fsp4HI	GCNGC	4 cut(s)	281, 336, 930, 933
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	4 cut(s)	281, 336, 930, 933
GsaI	CCCAGC	1 cut(s)	949
HaeIII	GGCC	5 cut(s)	35, 72, 525, 738, 914
HapII	CCGG	5 cut(s)	15, 36, 48, 69, 139
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	2 cut(s)	128, 259
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HinfI	GANTC	1 cut(s)	491
HpaII	CCGG	5 cut(s)	15, 36, 48, 69, 139
HphI	GGTGA	3 cut(s)	106, 397, 625
Hpy188I	TCNGA	3 cut(s)	379, 691, 801
Hpy188III	TCNNGA	2 cut(s)	413, 530
HpyAV	CCTTC	3 cut(s)	88, 173, 382
HpyCH4III	ACNGT	8 cut(s)	61, 88, 118, 146, 160, 276, 550, 637
HpyCH4IV	ACGT	4 cut(s)	30, 596, 711, 979
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 920, 929
HpyF3I	CTNAG	2 cut(s)	170, 376
HpySE526I	ACGT	4 cut(s)	30, 596, 711, 979
Hsp92II	CATG	2 cut(s)	128, 259
HspAI	GCGC	1 cut(s)	537
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	17, 347
Lsp1109I	GCAGC	2 cut(s)	267, 347
LweI	GCATC	4 cut(s)	90, 462, 869, 981
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	4 cut(s)	30, 596, 711, 979
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	2 cut(s)	109, 799
MfeI	CAATTG	1 cut(s)	936
MluCI	AATT	5 cut(s)	324, 573, 795, 936, 951
MlyI	GAGTC	1 cut(s)	485
MnlI	CCTC	6 cut(s)	194, 385, 537, 550, 563, 578
Mph1103I	ATGCAT	1 cut(s)	666
MroNI	GCCGGC	1 cut(s)	35
MseI	TTAA	4 cut(s)	186, 543, 602, 845
MspA1I	CMGCKG	1 cut(s)	945
MspCI	CTTAAG	1 cut(s)	844
MspI	CCGG	5 cut(s)	15, 36, 48, 69, 139
MunI	CAATTG	1 cut(s)	936
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	3 cut(s)	53, 920, 929
NaeI	GCCGGC	1 cut(s)	37
NdeI	CATATG	1 cut(s)	660
NdeII	GATC	1 cut(s)	354
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	128, 259
NlaIV	GGNNCC	2 cut(s)	67, 897
NsiI	ATGCAT	1 cut(s)	666
NspI	RCATGY	1 cut(s)	259
PdiI	GCCGGC	1 cut(s)	37
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	4 cut(s)	282, 337, 931, 934
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
Ppu21I	YACGTR	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	896
Psp1406I	AACGTT	1 cut(s)	596
Psp5II	RGGWCCY	1 cut(s)	896
PspFI	CCCAGC	1 cut(s)	945
PspN4I	GGNNCC	2 cut(s)	67, 897
PspPI	GGNCC	4 cut(s)	524, 691, 896, 912
PspPPI	RGGWCCY	1 cut(s)	896
PstI	CTGCAG	3 cut(s)	285, 337, 811
PstNI	CAGNNNCTG	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	945
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
SaqAI	TTAA	4 cut(s)	186, 543, 602, 845
SatI	GCNGC	4 cut(s)	281, 336, 930, 933
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	4 cut(s)	524, 691, 896, 912
SchI	GAGTC	1 cut(s)	485
SfaNI	GCATC	4 cut(s)	90, 462, 869, 981
SfcI	CTRYAG	4 cut(s)	117, 281, 333, 807
SgrAI	CRCCGGYG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	691, 896
SmlI	CTYRAG	1 cut(s)	844
SmoI	CTYRAG	1 cut(s)	844
Sse9I	AATT	5 cut(s)	324, 573, 795, 936, 951
SsiI	CCGC	3 cut(s)	582, 929, 932
SspMI	CTAG	1 cut(s)	413
StyI	CCWWGG	2 cut(s)	739, 774
TaaI	ACNGT	8 cut(s)	61, 88, 118, 146, 160, 276, 550, 637
TaiI	ACGT	4 cut(s)	33, 599, 714, 982
TaqI	TCGA	1 cut(s)	81
TasI	AATT	5 cut(s)	324, 573, 795, 936, 951
TatI	WGTACW	1 cut(s)	155
TauI	GCSGC	2 cut(s)	932, 935
Tru1I	TTAA	4 cut(s)	186, 543, 602, 845
Tru9I	TTAA	4 cut(s)	186, 543, 602, 845
TscAI	CASTG	3 cut(s)	64, 121, 470
TseI	GCWGC	2 cut(s)	280, 335
TspDTI	ATGAA	3 cut(s)	201, 284, 675
TspRI	CASTG	3 cut(s)	64, 121, 470
Tth111I	GACNNNGTC	1 cut(s)	86
Vha464I	CTTAAG	1 cut(s)	844
VpaK11BI	GGWCC	2 cut(s)	691, 896
XapI	RAATTY	1 cut(s)	573
XbaI	TCTAGA	1 cut(s)	412
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.