RchiOBHm_Chr5g0010411

Zingipain-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0019422
Physical Location & Seq
Reverse (-)
6880690 .. 6880863
174 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29117

Sequence Viewer

Length: 174 bp
ATGGAGAAGCCCTTAAGGCACACGCGGGAGGGGTACTCTCCGGTGAGCGAGTGTGGGACAAACCTTACTCATACTGTTACAATTCTTGGCTATGAAACCACTGAAGATGGTACCGACTATTGGTTAGTGAAGAACTCGTGGGGAGAAAGATGGGATGAAAATGGCTACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

57

Amino Acids

6.63

Weight (kDa)

4.71

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 9 - 56 2.7e-14 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019422)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0010411
rosa_laevigata RLG00000036650 RLG00000036654
rosa_multiflora Rmu_sc0003323.1_g000010
rosa_roxburghii Rroxscaffold_2G00126230
rosa_rugosa Rorug05G0450700
rosa_samantha Rh2CG286000
rosa_wichuraiana Rw5G047110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 110
AccII CGCG 1 cut(s) 25
AciI CCGC 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 2 cut(s) 35, 112
AfiI CCNNNNNNNGG 1 cut(s) 120
AflII CTTAAG 1 cut(s) 13
Asp718I GGTACC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 55
BanI GGYRCC 1 cut(s) 110
BauI CACGAG 1 cut(s) 136
BccI CCATC 2 cut(s) 101, 144
BfrI CTTAAG 1 cut(s) 13
BglI GCCNNNNNGGC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 112
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 70
BspACI CCGC 1 cut(s) 25
BspFNI CGCG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 110
BspTI CTTAAG 1 cut(s) 13
BssSI CACGAG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 76
BstAFI CTTAAG 1 cut(s) 13
BstF5I GGATG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstUI CGCG 1 cut(s) 25
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 99
Csp6I GTAC 2 cut(s) 34, 111
CviAII CATG 1 cut(s) 171
CviJI RGCY 3 cut(s) 10, 90, 165
CviKI_1 RGCY 3 cut(s) 10, 90, 165
CviQI GTAC 2 cut(s) 34, 111
Eco57I CTGAAG 1 cut(s) 123
FaeI CATG 1 cut(s) 174
FaiI YATR 3 cut(s) 72, 93, 172
FaqI GGGAC 1 cut(s) 70
FatI CATG 1 cut(s) 170
FauI CCCGC 1 cut(s) 18
FokI GGATG 1 cut(s) 167
HapII CCGG 1 cut(s) 41
Hin1II CATG 1 cut(s) 174
HpaII CCGG 1 cut(s) 41
HphI GGTGA 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
Hsp92II CATG 1 cut(s) 174
KpnI GGTACC 1 cut(s) 114
LpnPI CCDG 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 76
MboII GAAGA 2 cut(s) 116, 142
MluCI AATT 1 cut(s) 81
MnlI CCTC 1 cut(s) 22
MseI TTAA 1 cut(s) 14
MspCI CTTAAG 1 cut(s) 13
MspI CCGG 1 cut(s) 41
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 16
NlaIII CATG 1 cut(s) 174
NlaIV GGNNCC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 112
RsaI GTAC 2 cut(s) 35, 112
RsaNI GTAC 2 cut(s) 34, 111
SaqAI TTAA 1 cut(s) 14
SetI ASST 1 cut(s) 66
SgeI CNNG 8 cut(s) 34, 36, 38, 53, 61, 98, 148, 150
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 1 cut(s) 81
SsiI CCGC 1 cut(s) 25
TaaI ACNGT 1 cut(s) 76
TasI AATT 1 cut(s) 81
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 108, 171
TspRI CASTG 1 cut(s) 106
Vha464I CTTAAG 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.