Rw5G047110

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0019422
Physical Location & Seq
Forward (+)
81609061 .. 81612705
3645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G047110.1

Sequence Viewer

Length: 891 bp
ATGGCGCATGAGCGCAGATCGGCTGAAAGAAAATCAGACATTGTACTGAAAGCAACAATGGCTCTCCGCAATGCAATTGGAAAGCTGACCAGGATTATGAGGAGGTTCAACAGGACAGAAGCAACTGGACATGACATTGGGAGGCTCAACATAACATTAAGGAGGTTCAACACGACTAGAGCATACAAACATGATGTTGAAAAGCTCATAATGAGAAGGTTCAACATAACCGGGGAATACAAACATGACGGGAAGCTCATCAGGCACACCAACCTGAGAAGGTTCAATACCATTGGGCAAAATGAACTTGATGACAAGGAAAATGGTGAACTTGAAGAGGGAGGAAGGAAAATCAAAATAGGAGGATACAGAGTGGTGAAGGGAAGAACAAAAATAAAGAAAGTCCTCAGGCTACACCCATCTGTAGGCTGCATTGCAGTTCATCCCATTGAACAATTTTACTCGGGTGACATAATTGAATCAAGACACTTGAAATTTTTTGAGACAGTTAAATGGGATGATAATGAGTTTCCTATGTGTGAAGCTCAGAATATTTCTTGTCCATACATCCAGAAGCATGTAGTGGGATTCTGTCACTACTGTGGATACACCAAGGGGTTTCACACAGTTGTGCTGAGTGGATACGACACGCGAACTGCTGGCAAACACCACTGGATATTCAGAAACACCAGGGGGGAACAGTGGGGGGTCAACGGCTATGGAATGATGAAAATGACTGAATCAGAAGAAGATATTGGAGACAACGAGGTTGATGAGACAGTAAGAAACGGGCTGCCACTTGGCCTATTGAACATTGAGCAATTTGCTGTGTATCCTATTCCACACCACAGTTGGAAGAAACGGGAGGGACTTGAATGGAAGCAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

296

Amino Acids

34.55

Weight (kDa)

9.5

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 199 - 249 1.3e-06 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019422)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0010411
rosa_laevigata RLG00000036650 RLG00000036654
rosa_multiflora Rmu_sc0003323.1_g000010
rosa_roxburghii Rroxscaffold_2G00126230
rosa_rugosa Rorug05G0450700
rosa_samantha Rh2CG286000
rosa_wichuraiana Rw5G047110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 652
AciI CCGC 1 cut(s) 67
AcsI RAATTY 1 cut(s) 494
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 425
AjnI CCWGG 2 cut(s) 89, 689
AjuI GAANNNNNNNTTGG 2 cut(s) 738, 770
AleI CACNNNNGTG 2 cut(s) 600, 629
AluBI AGCT 4 cut(s) 85, 205, 256, 545
AluI AGCT 4 cut(s) 85, 205, 256, 545
Alw26I GTCTC 3 cut(s) 497, 753, 770
Ama87I CYCGRG 1 cut(s) 463
AoxI GGCC 1 cut(s) 802
ApeKI GCWGC 2 cut(s) 429, 793
ApoI RAATTY 1 cut(s) 494
AspLEI GCGC 2 cut(s) 7, 15
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 3 cut(s) 338, 388, 479
AvaI CYCGRG 1 cut(s) 463
AxyI CCTNAGG 1 cut(s) 407
BarI GAAGNNNNNNTAC 2 cut(s) 271, 303
BbvI GCAGC 2 cut(s) 416, 780
BccI CCATC 1 cut(s) 427
BceAI ACGGC 1 cut(s) 730
BciT130I CCWGG 2 cut(s) 91, 691
BciVI GTATCC 4 cut(s) 359, 599, 635, 843
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 3 cut(s) 497, 753, 770
BfaI CTAG 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 423
BfuI GTATCC 4 cut(s) 359, 599, 635, 843
BisI GCNGC 2 cut(s) 430, 794
BlsI GCNGC 2 cut(s) 431, 795
Bme1390I CCNGG 3 cut(s) 91, 232, 691
BmeT110I CYCGRG 1 cut(s) 463
BmrFI CCNGG 3 cut(s) 91, 232, 691
BpuMI CCSGG 1 cut(s) 232
BsaJI CCNNGG 3 cut(s) 231, 612, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse1I ACTGG 2 cut(s) 130, 677
Bse21I CCTNAGG 1 cut(s) 407
Bse3DI GCAATG 2 cut(s) 76, 432
BseBI CCWGG 2 cut(s) 91, 691
BseDI CCNNGG 3 cut(s) 231, 612, 690
BseGI GGATG 3 cut(s) 442, 523, 567
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMI GCAATG 2 cut(s) 76, 432
BseMII CTCAG 4 cut(s) 266, 421, 560, 626
BseNI ACTGG 2 cut(s) 130, 677
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 416, 780
Bsh1236I CGCG 1 cut(s) 652
BshFI GGCC 1 cut(s) 804
BsiHKCI CYCGRG 1 cut(s) 463
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 882
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 3 cut(s) 497, 753, 770
BsmFI GGGAC 1 cut(s) 882
BsnI GGCC 1 cut(s) 804
BsoBI CYCGRG 1 cut(s) 463
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 804
BspCNI CTCAG 4 cut(s) 267, 420, 559, 627
BspFNI CGCG 1 cut(s) 652
BsrDI GCAATG 2 cut(s) 76, 432
BsrI ACTGG 2 cut(s) 130, 677
BssECI CCNNGG 3 cut(s) 231, 612, 690
BssMI GATC 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 612
Bst2UI CCWGG 2 cut(s) 91, 691
Bst4CI ACNGT 6 cut(s) 508, 602, 628, 702, 781, 851
Bst6I CTCTTC 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 661
BstDEI CTNAG 4 cut(s) 275, 407, 546, 635
BstF5I GGATG 3 cut(s) 442, 523, 567
BstFNI CGCG 1 cut(s) 652
BstHHI GCGC 2 cut(s) 7, 15
BstKTI GATC 1 cut(s) 20
BstMAI GTCTC 3 cut(s) 497, 753, 770
BstMBI GATC 1 cut(s) 17
BstMWI GCNNNNNNNGC 2 cut(s) 59, 262
BstNI CCWGG 2 cut(s) 91, 691
BstNSI RCATGY 1 cut(s) 581
BstSCI CCNGG 3 cut(s) 89, 230, 689
BstSFI CTRYAG 1 cut(s) 423
BstUI CGCG 1 cut(s) 652
BstV1I GCAGC 2 cut(s) 416, 780
Bsu36I CCTNAGG 1 cut(s) 407
BsuI GTATCC 4 cut(s) 359, 599, 635, 843
BsuRI GGCC 1 cut(s) 804
BtsCI GGATG 3 cut(s) 442, 523, 567
BtsIMutI CAGTG 2 cut(s) 670, 707
Cac8I GCNNGC 1 cut(s) 661
CfoI GCGC 2 cut(s) 7, 15
Csp6I GTAC 1 cut(s) 44
CviAII CATG 5 cut(s) 8, 131, 191, 245, 578
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 4 cut(s) 275, 407, 546, 635
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 612
Eco81I CCTNAGG 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 463
EcoRII CCWGG 2 cut(s) 89, 689
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 5 cut(s) 11, 134, 194, 248, 581
FaqI GGGAC 1 cut(s) 882
FatI CATG 5 cut(s) 7, 130, 190, 244, 577
Fnu4HI GCNGC 2 cut(s) 430, 794
FokI GGATG 3 cut(s) 429, 530, 554
Fsp4HI GCNGC 2 cut(s) 430, 794
FspBI CTAG 1 cut(s) 177
GlaI GCGC 2 cut(s) 6, 14
GluI GCNGC 2 cut(s) 430, 794
HaeIII GGCC 1 cut(s) 804
HapII CCGG 1 cut(s) 231
HhaI GCGC 2 cut(s) 7, 15
Hin1II CATG 5 cut(s) 11, 134, 194, 248, 581
Hin6I GCGC 2 cut(s) 5, 13
HinP1I GCGC 2 cut(s) 5, 13
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HinfI GANTC 3 cut(s) 479, 588, 740
HpaII CCGG 1 cut(s) 231
HphI GGTGA 3 cut(s) 338, 388, 479
Hpy166II GTNNAC 2 cut(s) 329, 712
Hpy188I TCNGA 4 cut(s) 37, 549, 683, 745
Hpy188III TCNNGA 2 cut(s) 483, 571
Hpy8I GTNNAC 2 cut(s) 329, 712
HpyAV CCTTC 4 cut(s) 210, 273, 339, 373
HpyCH4III ACNGT 6 cut(s) 508, 602, 628, 702, 781, 851
HpyCH4V TGCA 3 cut(s) 74, 432, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 262
HpyF3I CTNAG 4 cut(s) 275, 407, 546, 635
Hsp92II CATG 5 cut(s) 11, 134, 194, 248, 581
HspAI GCGC 2 cut(s) 5, 13
Kzo9I GATC 1 cut(s) 17
Lsp1109I GCAGC 2 cut(s) 416, 780
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 467, 593
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 5 cut(s) 347, 396, 758, 761, 868
MfeI CAATTG 1 cut(s) 75
MluCI AATT 5 cut(s) 75, 455, 474, 494, 821
MmeI TCCRAC 1 cut(s) 833
MseI TTAA 2 cut(s) 158, 510
MslI CAYNNNNRTG 2 cut(s) 600, 629
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 3 cut(s) 91, 232, 691
MunI CAATTG 1 cut(s) 75
MvaI CCWGG 2 cut(s) 91, 691
MvnI CGCG 1 cut(s) 652
MwoI GCNNNNNNNGC 2 cut(s) 59, 262
NciI CCSGG 1 cut(s) 232
NdeII GATC 1 cut(s) 17
NlaIII CATG 5 cut(s) 11, 134, 194, 248, 581
NmuCI GTSAC 2 cut(s) 467, 593
NspI RCATGY 1 cut(s) 581
OliI CACNNNNGTG 2 cut(s) 600, 629
PfeI GAWTC 3 cut(s) 479, 588, 740
PkrI GCNGC 2 cut(s) 431, 795
Psp6I CCWGG 2 cut(s) 89, 689
PspGI CCWGG 2 cut(s) 89, 689
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
RseI CAYNNNNRTG 2 cut(s) 600, 629
SaqAI TTAA 2 cut(s) 158, 510
SatI GCNGC 2 cut(s) 430, 794
Sau3AI GATC 1 cut(s) 17
ScrFI CCNGG 3 cut(s) 91, 232, 691
SfcI CTRYAG 1 cut(s) 423
SmiMI CAYNNNNRTG 2 cut(s) 600, 629
Sse9I AATT 5 cut(s) 75, 455, 474, 494, 821
SsiI CCGC 1 cut(s) 67
SspI AATATT 1 cut(s) 553
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 3 cut(s) 89, 230, 689
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 6 cut(s) 508, 602, 628, 702, 781, 851
TasI AATT 5 cut(s) 75, 455, 474, 494, 821
TatI WGTACW 1 cut(s) 43
TfiI GAWTC 3 cut(s) 479, 588, 740
Tru1I TTAA 2 cut(s) 158, 510
Tru9I TTAA 2 cut(s) 158, 510
TscAI CASTG 2 cut(s) 677, 707
TseFI GTSAC 2 cut(s) 467, 593
TseI GCWGC 2 cut(s) 429, 793
Tsp45I GTSAC 2 cut(s) 467, 593
TspDTI ATGAA 3 cut(s) 318, 431, 743
TspRI CASTG 2 cut(s) 677, 707
XapI RAATTY 1 cut(s) 494
XceI RCATGY 1 cut(s) 581
XcmI CCANNNNNNNNNTGG 1 cut(s) 849
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.