Rh2CG286000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
32080250 .. 32080511
262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG286000.1

Sequence Viewer

Length: 159 bp
ATGTGGATGTTCCTGAAGAAGACAGATCAATGTTGGGGAATAGGGCATGCCGAGTGCCTAGAAGCCATCTACAAGCTCTACACTGCGGAGACGGTGGTTGTATCACCACAACATATACTAGATAAGGGGGAGGGCTCCAACAGCAAAGGATCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.83

Weight (kDa)

6.7

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019422)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0010411
rosa_laevigata RLG00000036650 RLG00000036654
rosa_multiflora Rmu_sc0003323.1_g000010
rosa_roxburghii Rroxscaffold_2G00126230
rosa_rugosa Rorug05G0450700
rosa_samantha Rh2CG286000
rosa_wichuraiana Rw5G047110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 35
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 96
BanII GRGCYC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 26
BccI CCATC 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 2 cut(s) 59, 119
BmiI GGNNCC 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 26
BseGI GGATG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 83
BsmBI CGTCTC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 2 cut(s) 25, 149
BspACI CCGC 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 1 cut(s) 157
BssMI GATC 2 cut(s) 25, 149
Bst4CI ACNGT 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 48
BstF5I GGATG 1 cut(s) 12
BstKTI GATC 2 cut(s) 28, 152
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 25, 149
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 12
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 48
CviAII CATG 1 cut(s) 47
CviJI RGCY 3 cut(s) 65, 76, 135
CviKI_1 RGCY 3 cut(s) 65, 76, 135
DpnI GATC 2 cut(s) 27, 151
DpnII GATC 2 cut(s) 25, 149
Eco24I GRGCYC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 137
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 1 cut(s) 50
FaiI YATR 3 cut(s) 48, 114, 116
FatI CATG 1 cut(s) 46
FokI GGATG 1 cut(s) 19
FriOI GRGCYC 1 cut(s) 137
FspBI CTAG 2 cut(s) 59, 119
Hin1II CATG 1 cut(s) 50
HphI GGTGA 1 cut(s) 96
Hpy188III TCNNGA 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 50
Kzo9I GATC 2 cut(s) 25, 149
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 1 cut(s) 26
MaeI CTAG 2 cut(s) 59, 119
MalI GATC 2 cut(s) 27, 151
MboI GATC 2 cut(s) 25, 149
MboII GAAGA 2 cut(s) 28, 31
MhlI GDGCHC 1 cut(s) 137
MnlI CCTC 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 141
NdeII GATC 2 cut(s) 25, 149
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 76
NspI RCATGY 1 cut(s) 50
PaeI GCATGC 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 136
Sau3AI GATC 2 cut(s) 25, 149
SduI GDGCHC 1 cut(s) 137
SetI ASST 1 cut(s) 78
SgeI CNNG 6 cut(s) 25, 59, 64, 71, 85, 131
SphI GCATGC 1 cut(s) 50
SsiI CCGC 1 cut(s) 86
SspMI CTAG 2 cut(s) 59, 119
TaaI ACNGT 1 cut(s) 94
TscAI CASTG 1 cut(s) 88
TspRI CASTG 1 cut(s) 88
XceI RCATGY 1 cut(s) 50
XspI CTAG 2 cut(s) 59, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.