RLG00000036650

Thiol protease SEN102

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019422
Physical Location & Seq
Reverse (-)
82934002 .. 82935360
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036650

Sequence Viewer

Length: 1050 bp
ATGCAGAAATTGAGTACCGGTGAGTTCAATACAACTGATGCAGTTCAACATGTGGCAAAGCTCATCAGAAACAAGAATGTGAGAGGATACATTGCAAACGGGGCTGTTCAACATGTTGGAAAGCTCATCGAGGACAGATATGTGAGAGGGATCAACACTGTTGGGCCAAATGAGCAAGAGCATGATGATGACGAGTACATAAACTGGGAACCCTATCTGAATGATGAAGTCAGAATGCAGGAGGATGATCATTGCTGGACCATTGGTCCAGTTGACTGCCTGGAATCTGTATACAAACTGTACACCAACGAGACTGTGGTATTGTCTGCCAGGCATATTGTAGACAAGGCACCAAGGGAGAAAGATAGGAGCAAATTTGAGGAGTATGAGAAGGGCCGCCGCTCAGAGGGAGGCTCAGTACGTGATGCGTATAACTTTATTGCAAGCAATGGAGTGGCACTAGAATCAGACTGGCCATATTCAAAGGGGCCAATCAAGGAGGACGGAAGAAAAATATTCATAGGAGGGTACAGGAGAGTAAAGGGAAGAACTGAAATAAAGAAGACGCTCAAATTTCATCCTGTAGTAGGGTGCACAGCAGTCCATCCTATATTGCAGTTTTACAAAGGCGGTGACATAATAGACTCGAGTCACCTACCATTTTTCGAGGGAACAAGATGGGCTGATAACGAACTCCCCCGGTGTAGATCCACCACATGTCCAAACAAAGGGAACCTTGTGTATAAATTCTGCCACATATGTGGCTATTCTAAGGGATACCATACTGTGGTTCTAACTGGATACGACACAAGGGTAGCTGGACAGCATCACTGGATCATTAGGAACACCCATGGAAAGGAGTGGGGGCAAGGGGGTTATGGATTCCTCAAAATGACTGAATCAAATGAGGATATAACTGAAGATGATGTTGATGAGGCAGTGCAGCAAAACCTACCACTTGGCGTGCTCAATGTTGAACACTTTGCAGTGTATCCTATTCCCCACTACAGTTGGAAGAAGAAAGACGGACTCAAATGGAATCACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

350

Amino Acids

40.04

Weight (kDa)

6.6

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 84 - 211 1.1e-07 Papain family cysteine protease
Peptidase_C1 PF00112 253 - 301 3.4e-06 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019422)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0010411
rosa_laevigata RLG00000036650 RLG00000036654
rosa_multiflora Rmu_sc0003323.1_g000010
rosa_roxburghii Rroxscaffold_2G00126230
rosa_rugosa Rorug05G0450700
rosa_samantha Rh2CG286000
rosa_wichuraiana Rw5G047110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 349
AccB7I CCANNNNNTGG 1 cut(s) 787
AccBSI CCGCTC 1 cut(s) 402
AccI GTMKAC 2 cut(s) 291, 342
AciI CCGC 3 cut(s) 397, 400, 630
AclWI GGATC 3 cut(s) 158, 702, 842
AcoI YGGCCR 1 cut(s) 473
AcsI RAATTY 3 cut(s) 374, 572, 746
AcuI CTGAAG 1 cut(s) 939
AfaI GTAC 5 cut(s) 16, 197, 302, 420, 530
AfiI CCNNNNNNNGG 5 cut(s) 406, 587, 728, 787, 856
AflIII ACRYGT 3 cut(s) 49, 112, 716
AgeI ACCGGT 1 cut(s) 17
AgsI TTSAA 5 cut(s) 28, 47, 110, 483, 977
AhdI GACNNNNNGTC 1 cut(s) 264
AjnI CCWGG 2 cut(s) 279, 329
AleI CACNNNNGTG 1 cut(s) 759
AluBI AGCT 3 cut(s) 61, 124, 818
AluI AGCT 3 cut(s) 61, 124, 818
Alw21I GWGCWC 2 cut(s) 596, 969
Alw26I GTCTC 1 cut(s) 305
Alw44I GTGCAC 1 cut(s) 592
AlwI GGATC 3 cut(s) 158, 702, 842
Ama87I CYCGRG 1 cut(s) 646
AoxI GGCC 4 cut(s) 164, 394, 473, 488
ApaLI GTGCAC 1 cut(s) 592
ApeKI GCWGC 1 cut(s) 943
ApoI RAATTY 3 cut(s) 374, 572, 746
AsiGI ACCGGT 1 cut(s) 17
AspS9I GGNCC 5 cut(s) 164, 258, 266, 394, 488
AsuC2I CCSGG 1 cut(s) 700
AsuHPI GGTGA 3 cut(s) 32, 644, 644
AvaI CYCGRG 1 cut(s) 646
AvaII GGWCC 2 cut(s) 258, 266
BaeGI GKGCMC 1 cut(s) 596
BalI TGGCCA 1 cut(s) 475
BanI GGYRCC 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 569
Bbv12I GWGCWC 2 cut(s) 596, 969
BbvI GCAGC 1 cut(s) 955
BccI CCATC 2 cut(s) 612, 672
BciT130I CCWGG 2 cut(s) 281, 331
BciVI GTATCC 4 cut(s) 80, 770, 794, 1002
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 1 cut(s) 700
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 1 cut(s) 461
BfmI CTRYAG 2 cut(s) 582, 1006
BfuI GTATCC 4 cut(s) 80, 770, 794, 1002
BisI GCNGC 3 cut(s) 397, 400, 944
BlsI GCNGC 3 cut(s) 398, 401, 945
Bme1390I CCNGG 3 cut(s) 281, 331, 700
Bme18I GGWCC 2 cut(s) 258, 266
BmeRI GACNNNNNGTC 1 cut(s) 264
BmeT110I CYCGRG 1 cut(s) 646
BmgT120I GGNCC 5 cut(s) 164, 258, 266, 394, 488
BmiI GGNNCC 4 cut(s) 210, 351, 489, 734
BmrFI CCNGG 3 cut(s) 281, 331, 700
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 3 cut(s) 28, 415, 835
BmuI ACTGGG 1 cut(s) 214
BoxI GACNNNNGTC 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 569
BplI GAGNNNNNCTC 2 cut(s) 398, 430
BpuMI CCSGG 1 cut(s) 700
BsaAI YACGTR 1 cut(s) 422
BsaJI CCNNGG 3 cut(s) 353, 698, 850
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 5 cut(s) 406, 587, 728, 787, 856
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 5 cut(s) 209, 269, 476, 802, 836
Bse3DI GCAATG 3 cut(s) 90, 250, 454
BseBI CCWGG 2 cut(s) 281, 331
BseDI CCNNGG 3 cut(s) 353, 698, 850
BseGI GGATG 3 cut(s) 250, 577, 604
BseLI CCNNNNNNNGG 5 cut(s) 406, 587, 728, 787, 856
BseMI GCAATG 3 cut(s) 90, 250, 454
BseMII CTCAG 2 cut(s) 417, 429
BseNI ACTGG 5 cut(s) 209, 269, 476, 802, 836
BseRI GAGGAG 1 cut(s) 395
BseSI GKGCMC 1 cut(s) 596
BseXI GCAGC 1 cut(s) 955
BsgI GTGCAG 1 cut(s) 962
BshFI GGCC 4 cut(s) 166, 396, 475, 490
BshNI GGYRCC 1 cut(s) 349
BshTI ACCGGT 1 cut(s) 17
BsiHKAI GWGCWC 2 cut(s) 596, 969
BsiHKCI CYCGRG 1 cut(s) 646
BsiSI CCGG 2 cut(s) 18, 700
BslI CCNNNNNNNGG 5 cut(s) 406, 587, 728, 787, 856
BsmAI GTCTC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 4 cut(s) 166, 396, 475, 490
BsoBI CYCGRG 1 cut(s) 646
Bsp1286I GDGCHC 2 cut(s) 596, 969
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 4 cut(s) 150, 247, 707, 834
Bsp19I CCATGG 1 cut(s) 850
BspACI CCGC 3 cut(s) 397, 400, 630
BspANI GGCC 4 cut(s) 166, 396, 475, 490
BspCNI CTCAG 2 cut(s) 416, 428
BspLI GGNNCC 4 cut(s) 210, 351, 489, 734
BspPI GGATC 3 cut(s) 158, 702, 842
BspT107I GGYRCC 1 cut(s) 349
BsrBI CCGCTC 1 cut(s) 402
BsrDI GCAATG 3 cut(s) 90, 250, 454
BsrFI RCCGGY 1 cut(s) 17
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 5 cut(s) 209, 269, 476, 802, 836
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 3 cut(s) 353, 698, 850
BssMI GATC 4 cut(s) 150, 247, 707, 834
BssNAI GTATAC 1 cut(s) 292
BssT1I CCWWGG 2 cut(s) 353, 850
Bst1107I GTATAC 1 cut(s) 292
Bst2UI CCWGG 2 cut(s) 281, 331
Bst4CI ACNGT 5 cut(s) 160, 300, 316, 787, 1010
BstAUI TGTACA 1 cut(s) 300
BstBAI YACGTR 1 cut(s) 422
BstC8I GCNNGC 2 cut(s) 445, 965
BstDEI CTNAG 3 cut(s) 403, 415, 771
BstDSI CCRYGG 1 cut(s) 850
BstENI CCTNNNNNAGG 1 cut(s) 585
BstF5I GGATG 3 cut(s) 250, 577, 604
BstKTI GATC 4 cut(s) 153, 250, 710, 837
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 4 cut(s) 150, 247, 707, 834
BstMWI GCNNNNNNNGC 2 cut(s) 101, 172
BstNI CCWGG 2 cut(s) 281, 331
BstNSI RCATGY 3 cut(s) 53, 116, 720
BstPAI GACNNNNGTC 1 cut(s) 648
BstSCI CCNGG 3 cut(s) 279, 329, 698
BstSFI CTRYAG 2 cut(s) 582, 1006
BstSLI GKGCMC 1 cut(s) 596
BstV1I GCAGC 1 cut(s) 955
BstV2I GAAGAC 1 cut(s) 569
BstX2I RGATCY 1 cut(s) 707
BstXI CCANNNNNNTGG 1 cut(s) 761
BstYI RGATCY 1 cut(s) 707
BstZ17I GTATAC 1 cut(s) 292
BsuI GTATCC 4 cut(s) 80, 770, 794, 1002
BsuRI GGCC 4 cut(s) 166, 396, 475, 490
BtgI CCRYGG 1 cut(s) 850
BtsCI GGATG 3 cut(s) 250, 577, 604
BtsI GCAGTG 2 cut(s) 945, 993
BtsIMutI CAGTG 4 cut(s) 156, 829, 945, 993
Cac8I GCNNGC 2 cut(s) 445, 965
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 5 cut(s) 164, 258, 266, 394, 488
CseI GACGC 1 cut(s) 574
Csp6I GTAC 5 cut(s) 15, 196, 301, 419, 529
CspAI ACCGGT 1 cut(s) 17
CspCI CAANNNNNGTGG 2 cut(s) 992, 1027
CviAII CATG 5 cut(s) 50, 113, 182, 717, 851
CviQI GTAC 5 cut(s) 15, 196, 301, 419, 529
DdeI CTNAG 3 cut(s) 403, 415, 771
DpnI GATC 4 cut(s) 152, 249, 709, 836
DpnII GATC 4 cut(s) 150, 247, 707, 834
DriI GACNNNNNGTC 1 cut(s) 264
EaeI YGGCCR 1 cut(s) 473
Eam1105I GACNNNNNGTC 1 cut(s) 264
Eco130I CCWWGG 2 cut(s) 353, 850
Eco47I GGWCC 2 cut(s) 258, 266
Eco57I CTGAAG 1 cut(s) 939
Eco88I CYCGRG 1 cut(s) 646
EcoNI CCTNNNNNAGG 1 cut(s) 585
EcoRII CCWGG 2 cut(s) 279, 329
EcoT14I CCWWGG 2 cut(s) 353, 850
ErhI CCWWGG 2 cut(s) 353, 850
FaeI CATG 5 cut(s) 53, 116, 185, 720, 854
FalI AAGNNNNNCTT 2 cut(s) 720, 752
FatI CATG 5 cut(s) 49, 112, 181, 716, 850
FauNDI CATATG 1 cut(s) 758
FbaI TGATCA 1 cut(s) 247
FblI GTMKAC 2 cut(s) 291, 342
Fnu4HI GCNGC 3 cut(s) 397, 400, 944
FokI GGATG 3 cut(s) 257, 564, 591
Fsp4HI GCNGC 3 cut(s) 397, 400, 944
FspBI CTAG 1 cut(s) 461
GluI GCNGC 3 cut(s) 397, 400, 944
HaeIII GGCC 4 cut(s) 166, 396, 475, 490
HapII CCGG 2 cut(s) 18, 700
HgaI GACGC 1 cut(s) 574
Hin1II CATG 5 cut(s) 53, 116, 185, 720, 854
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 8 cut(s) 284, 464, 644, 649, 882, 899, 1029, 1039
HpaII CCGG 2 cut(s) 18, 700
HphI GGTGA 3 cut(s) 32, 644, 644
Hpy166II GTNNAC 5 cut(s) 274, 292, 303, 343, 594
Hpy188I TCNGA 5 cut(s) 68, 219, 233, 406, 469
Hpy8I GTNNAC 5 cut(s) 274, 292, 303, 343, 594
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 5 cut(s) 160, 300, 316, 787, 1010
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 9 cut(s) 4, 41, 95, 238, 443, 594, 616, 943, 986
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 172
HpyF3I CTNAG 3 cut(s) 403, 415, 771
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 5 cut(s) 53, 116, 185, 720, 854
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 4 cut(s) 150, 247, 707, 834
LmnI GCTCC 1 cut(s) 369
Lsp1109I GCAGC 1 cut(s) 955
LweI GCATC 3 cut(s) 28, 415, 835
MaeI CTAG 1 cut(s) 461
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 2 cut(s) 632, 650
MalI GATC 4 cut(s) 152, 249, 709, 836
MbiI CCGCTC 1 cut(s) 402
MboI GATC 4 cut(s) 150, 247, 707, 834
MboII GAAGA 6 cut(s) 519, 558, 574, 932, 1027, 1030
MflI RGATCY 1 cut(s) 707
MhlI GDGCHC 2 cut(s) 596, 969
MlsI TGGCCA 1 cut(s) 475
MluCI AATT 4 cut(s) 8, 374, 572, 746
MluNI TGGCCA 1 cut(s) 475
MlyI GAGTC 3 cut(s) 638, 658, 1023
MmeI TCCRAC 2 cut(s) 97, 992
Mox20I TGGCCA 1 cut(s) 475
MscI TGGCCA 1 cut(s) 475
MslI CAYNNNNRTG 2 cut(s) 186, 759
Msp20I TGGCCA 1 cut(s) 475
MspI CCGG 2 cut(s) 18, 700
MspR9I CCNGG 3 cut(s) 281, 331, 700
Mva1269I GAATGC 1 cut(s) 240
MvaI CCWGG 2 cut(s) 281, 331
MwoI GCNNNNNNNGC 2 cut(s) 101, 172
NciI CCSGG 1 cut(s) 700
NcoI CCATGG 1 cut(s) 850
NdeI CATATG 1 cut(s) 758
NdeII GATC 4 cut(s) 150, 247, 707, 834
NlaIII CATG 5 cut(s) 53, 116, 185, 720, 854
NlaIV GGNNCC 4 cut(s) 210, 351, 489, 734
NmuCI GTSAC 2 cut(s) 632, 650
NspI RCATGY 3 cut(s) 53, 116, 720
OliI CACNNNNGTG 1 cut(s) 759
PaeR7I CTCGAG 1 cut(s) 646
PciI ACATGT 3 cut(s) 49, 112, 716
PctI GAATGC 1 cut(s) 240
PfeI GAWTC 5 cut(s) 284, 464, 882, 899, 1039
PflMI CCANNNNNTGG 1 cut(s) 787
PinAI ACCGGT 1 cut(s) 17
PkrI GCNGC 3 cut(s) 398, 401, 945
PleI GAGTC 3 cut(s) 638, 657, 1023
PpsI GAGTC 3 cut(s) 638, 657, 1023
Ppu21I YACGTR 1 cut(s) 422
PscI ACATGT 3 cut(s) 49, 112, 716
PshAI GACNNNNGTC 1 cut(s) 648
Psp6I CCWGG 2 cut(s) 279, 329
PspGI CCWGG 2 cut(s) 279, 329
PspN4I GGNNCC 4 cut(s) 210, 351, 489, 734
PspPI GGNCC 5 cut(s) 164, 258, 266, 394, 488
PspXI VCTCGAGB 1 cut(s) 646
PsuI RGATCY 1 cut(s) 707
RsaI GTAC 5 cut(s) 16, 197, 302, 420, 530
RsaNI GTAC 5 cut(s) 15, 196, 301, 419, 529
RseI CAYNNNNRTG 2 cut(s) 186, 759
SatI GCNGC 3 cut(s) 397, 400, 944
Sau3AI GATC 4 cut(s) 150, 247, 707, 834
Sau96I GGNCC 5 cut(s) 164, 258, 266, 394, 488
SchI GAGTC 3 cut(s) 638, 658, 1023
ScrFI CCNGG 3 cut(s) 281, 331, 700
SduI GDGCHC 2 cut(s) 596, 969
SetI ASST 7 cut(s) 63, 126, 424, 657, 738, 820, 954
SfaNI GCATC 3 cut(s) 28, 415, 835
SfcI CTRYAG 2 cut(s) 582, 1006
Sfr274I CTCGAG 1 cut(s) 646
SinI GGWCC 2 cut(s) 258, 266
SlaI CTCGAG 1 cut(s) 646
SmiMI CAYNNNNRTG 2 cut(s) 186, 759
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
Sse9I AATT 4 cut(s) 8, 374, 572, 746
SsiI CCGC 3 cut(s) 397, 400, 630
SspI AATATT 1 cut(s) 516
SspMI CTAG 1 cut(s) 461
StyD4I CCNGG 3 cut(s) 279, 329, 698
StyI CCWWGG 2 cut(s) 353, 850
TaaI ACNGT 5 cut(s) 160, 300, 316, 787, 1010
TaiI ACGT 1 cut(s) 424
TaqI TCGA 3 cut(s) 129, 647, 666
TasI AATT 4 cut(s) 8, 374, 572, 746
TatI WGTACW 2 cut(s) 195, 300
TauI GCSGC 2 cut(s) 399, 402
TfiI GAWTC 5 cut(s) 284, 464, 882, 899, 1039
TscAI CASTG 4 cut(s) 163, 836, 945, 993
TseFI GTSAC 2 cut(s) 632, 650
TseI GCWGC 1 cut(s) 943
Tsp45I GTSAC 2 cut(s) 632, 650
TspDTI ATGAA 3 cut(s) 240, 508, 566
TspGWI ACGGA 2 cut(s) 519, 1041
TspRI CASTG 4 cut(s) 163, 836, 945, 993
Van91I CCANNNNNTGG 1 cut(s) 787
VneI GTGCAC 1 cut(s) 592
VpaK11BI GGWCC 2 cut(s) 258, 266
XagI CCTNNNNNAGG 1 cut(s) 585
XapI RAATTY 3 cut(s) 374, 572, 746
XceI RCATGY 3 cut(s) 53, 116, 720
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XhoI CTCGAG 1 cut(s) 646
XmiI GTMKAC 2 cut(s) 291, 342
XspI CTAG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.