Rmu_sc0003323.1_g000010

Thiol protease SEN102

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003323.1
OG0019422
Physical Location & Seq
Reverse (-)
84260 .. 85657
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003323.1_g000010.1.cds

Sequence Viewer

Length: 1089 bp
atggctgtccgttgtctacctgggaagctgagaacattaatgcagaaattgagtacccgtgagttcaatacaactgatgcagttcaacatgtggcaaagctcatcagaaacaagaatgtgagaggatacattgcaaacggggctgttcaacatgtcggaaagctcatcaaggacagatatgtgagagggttcaacactgttgggccaaatgagcaagagcatgatgatgacaagtacataaactgggaaccctatctgaatgatgaagtcagaatgcaggaggatgatcattgctggaccgttggtccagttgactgcctggaatctgtatacaaactgtacaccaacgagaccgtggtattgtctgccaggcatattgtagacaaggcaccaagggagaaagataggagcaaatttgaggagtatgagaagggccgccgctcagagggaggctcagtacgtgatgcgtataactttattgcaagcaatggagtggcactagaatcagactggccatattcaaagggaccaatcaaggaggatggaagaaaaatattcataggagggtacagaagagtaaagggaagaactgaaataaagaagacgctcaaatttcatcctgtagtagggtgcacagcagtccatcctatattgcagttttacaaaggtggtgacataatagactcgagtcacctaccatttttcgagggaacaagatgggctgataacgacctcccccggtgtagatccaccacatgtccaaacaaagggaaccttgtgtataaattctgccacatatgtggctattctaagggataccatactgtggttctaactggatacgacacaagggtagctggacagcatcactggatcattaggaacacccatggaaaggagtgggggcaagggggttatggattcctcaaaatgactgaatcaaatgaggatataaccgaagatgatgttgatgaggcagtgaagcaaaacctaccacttggcgtgctcaatgttgaacacttcgcagtgtatcctattccccactacagttggaagaagaaagacggactcaaatggaatcactactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

362

Amino Acids

41.59

Weight (kDa)

8.7

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019422)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0010411
rosa_laevigata RLG00000036650 RLG00000036654
rosa_multiflora Rmu_sc0003323.1_g000010
rosa_roxburghii Rroxscaffold_2G00126230
rosa_rugosa Rorug05G0450700
rosa_samantha Rh2CG286000
rosa_wichuraiana Rw5G047110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 388
AccB7I CCANNNNNTGG 1 cut(s) 826
AccBSI CCGCTC 1 cut(s) 441
AccI GTMKAC 3 cut(s) 16, 330, 381
AciI CCGC 2 cut(s) 436, 439
AclWI GGATC 2 cut(s) 741, 881
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 3 cut(s) 413, 611, 785
AfaI GTAC 5 cut(s) 55, 236, 341, 459, 569
AfiI CCNNNNNNNGG 5 cut(s) 445, 626, 767, 826, 895
AflIII ACRYGT 3 cut(s) 88, 151, 755
AgsI TTSAA 6 cut(s) 67, 86, 149, 193, 522, 1016
AhdI GACNNNNNGTC 1 cut(s) 303
AjnI CCWGG 3 cut(s) 19, 318, 368
AleI CACNNNNGTG 1 cut(s) 798
AluBI AGCT 4 cut(s) 28, 100, 163, 857
AluI AGCT 4 cut(s) 28, 100, 163, 857
Alw21I GWGCWC 2 cut(s) 635, 1008
Alw26I GTCTC 1 cut(s) 344
Alw44I GTGCAC 1 cut(s) 631
AlwI GGATC 2 cut(s) 741, 881
Ama87I CYCGRG 1 cut(s) 685
AoxI GGCC 3 cut(s) 203, 433, 512
ApaLI GTGCAC 1 cut(s) 631
ApoI RAATTY 3 cut(s) 413, 611, 785
AseI ATTAAT 1 cut(s) 38
AspS9I GGNCC 5 cut(s) 203, 297, 305, 433, 527
AsuC2I CCSGG 1 cut(s) 739
AsuHPI GGTGA 2 cut(s) 683, 683
AvaI CYCGRG 1 cut(s) 685
AvaII GGWCC 3 cut(s) 297, 305, 527
BaeGI GKGCMC 1 cut(s) 635
BalI TGGCCA 1 cut(s) 514
BanI GGYRCC 1 cut(s) 388
BbsI GAAGAC 1 cut(s) 608
Bbv12I GWGCWC 2 cut(s) 635, 1008
BccI CCATC 3 cut(s) 536, 651, 711
BciT130I CCWGG 3 cut(s) 21, 320, 370
BciVI GTATCC 4 cut(s) 119, 809, 833, 1041
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 1 cut(s) 739
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 1 cut(s) 500
BfmI CTRYAG 2 cut(s) 621, 1045
BfuI GTATCC 4 cut(s) 119, 809, 833, 1041
BisI GCNGC 2 cut(s) 436, 439
BlsI GCNGC 2 cut(s) 437, 440
Bme1390I CCNGG 4 cut(s) 21, 320, 370, 739
Bme18I GGWCC 3 cut(s) 297, 305, 527
BmeRI GACNNNNNGTC 1 cut(s) 303
BmeT110I CYCGRG 1 cut(s) 685
BmgT120I GGNCC 5 cut(s) 203, 297, 305, 433, 527
BmiI GGNNCC 4 cut(s) 249, 390, 528, 773
BmrFI CCNGG 4 cut(s) 21, 320, 370, 739
BmrI ACTGGG 1 cut(s) 253
BmsI GCATC 3 cut(s) 67, 454, 874
BmuI ACTGGG 1 cut(s) 253
BoxI GACNNNNGTC 1 cut(s) 687
BpiI GAAGAC 1 cut(s) 608
BplI GAGNNNNNCTC 2 cut(s) 437, 469
BpuMI CCSGG 1 cut(s) 739
BsaAI YACGTR 1 cut(s) 461
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 5 cut(s) 20, 354, 392, 737, 889
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bsc4I CCNNNNNNNGG 5 cut(s) 445, 626, 767, 826, 895
Bse1I ACTGG 5 cut(s) 248, 308, 515, 841, 875
Bse3DI GCAATG 3 cut(s) 129, 289, 493
BseBI CCWGG 3 cut(s) 21, 320, 370
BseDI CCNNGG 5 cut(s) 20, 354, 392, 737, 889
BseGI GGATG 4 cut(s) 289, 547, 616, 643
BseLI CCNNNNNNNGG 5 cut(s) 445, 626, 767, 826, 895
BseMI GCAATG 3 cut(s) 129, 289, 493
BseMII CTCAG 3 cut(s) 20, 456, 468
BseNI ACTGG 5 cut(s) 248, 308, 515, 841, 875
BseRI GAGGAG 1 cut(s) 434
BseSI GKGCMC 1 cut(s) 635
BshFI GGCC 3 cut(s) 205, 435, 514
BshNI GGYRCC 1 cut(s) 388
BsiHKAI GWGCWC 2 cut(s) 635, 1008
BsiHKCI CYCGRG 1 cut(s) 685
BsiSI CCGG 1 cut(s) 739
BslFI GGGAC 1 cut(s) 540
BslI CCNNNNNNNGG 5 cut(s) 445, 626, 767, 826, 895
BsmAI GTCTC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 540
BsmI GAATGC 1 cut(s) 279
BsnI GGCC 3 cut(s) 205, 435, 514
Bso31I GGTCTC 1 cut(s) 344
BsoBI CYCGRG 1 cut(s) 685
Bsp1286I GDGCHC 2 cut(s) 635, 1008
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 3 cut(s) 286, 746, 873
Bsp19I CCATGG 1 cut(s) 889
BspACI CCGC 2 cut(s) 436, 439
BspANI GGCC 3 cut(s) 205, 435, 514
BspCNI CTCAG 3 cut(s) 21, 455, 467
BspLI GGNNCC 4 cut(s) 249, 390, 528, 773
BspPI GGATC 2 cut(s) 741, 881
BspT107I GGYRCC 1 cut(s) 388
BspTNI GGTCTC 1 cut(s) 344
BsrBI CCGCTC 1 cut(s) 441
BsrDI GCAATG 3 cut(s) 129, 289, 493
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 5 cut(s) 248, 308, 515, 841, 875
BssECI CCNNGG 5 cut(s) 20, 354, 392, 737, 889
BssMI GATC 3 cut(s) 286, 746, 873
BssNAI GTATAC 1 cut(s) 331
BssT1I CCWWGG 2 cut(s) 392, 889
Bst1107I GTATAC 1 cut(s) 331
Bst2UI CCWGG 3 cut(s) 21, 320, 370
Bst4CI ACNGT 6 cut(s) 199, 301, 339, 355, 826, 1049
Bst6I CTCTTC 1 cut(s) 568
BstAUI TGTACA 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 461
BstC8I GCNNGC 2 cut(s) 484, 1004
BstDEI CTNAG 4 cut(s) 29, 442, 454, 810
BstDSI CCRYGG 2 cut(s) 354, 889
BstENI CCTNNNNNAGG 1 cut(s) 624
BstF5I GGATG 4 cut(s) 289, 547, 616, 643
BstKTI GATC 3 cut(s) 289, 749, 876
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 3 cut(s) 286, 746, 873
BstMWI GCNNNNNNNGC 2 cut(s) 140, 211
BstNI CCWGG 3 cut(s) 21, 320, 370
BstNSI RCATGY 3 cut(s) 92, 155, 759
BstPAI GACNNNNGTC 1 cut(s) 687
BstSCI CCNGG 4 cut(s) 19, 318, 368, 737
BstSFI CTRYAG 2 cut(s) 621, 1045
BstSLI GKGCMC 1 cut(s) 635
BstV2I GAAGAC 1 cut(s) 608
BstX2I RGATCY 1 cut(s) 746
BstXI CCANNNNNNTGG 1 cut(s) 800
BstYI RGATCY 1 cut(s) 746
BstZ17I GTATAC 1 cut(s) 331
BsuI GTATCC 4 cut(s) 119, 809, 833, 1041
BsuRI GGCC 3 cut(s) 205, 435, 514
BtgI CCRYGG 2 cut(s) 354, 889
BtsCI GGATG 4 cut(s) 289, 547, 616, 643
BtsI GCAGTG 2 cut(s) 984, 1032
BtsIMutI CAGTG 4 cut(s) 195, 868, 984, 1032
Cac8I GCNNGC 2 cut(s) 484, 1004
Cfr13I GGNCC 5 cut(s) 203, 297, 305, 433, 527
CseI GACGC 1 cut(s) 613
Csp6I GTAC 5 cut(s) 54, 235, 340, 458, 568
CspCI CAANNNNNGTGG 2 cut(s) 1031, 1066
CviAII CATG 5 cut(s) 89, 152, 221, 756, 890
CviQI GTAC 5 cut(s) 54, 235, 340, 458, 568
DdeI CTNAG 4 cut(s) 29, 442, 454, 810
DpnI GATC 3 cut(s) 288, 748, 875
DpnII GATC 3 cut(s) 286, 746, 873
DriI GACNNNNNGTC 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 512
Eam1104I CTCTTC 1 cut(s) 568
Eam1105I GACNNNNNGTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 568
Eco130I CCWWGG 2 cut(s) 392, 889
Eco31I GGTCTC 1 cut(s) 344
Eco47I GGWCC 3 cut(s) 297, 305, 527
Eco88I CYCGRG 1 cut(s) 685
EcoNI CCTNNNNNAGG 1 cut(s) 624
EcoRII CCWGG 3 cut(s) 19, 318, 368
EcoT14I CCWWGG 2 cut(s) 392, 889
ErhI CCWWGG 2 cut(s) 392, 889
FaeI CATG 5 cut(s) 92, 155, 224, 759, 893
FalI AAGNNNNNCTT 2 cut(s) 759, 791
FaqI GGGAC 1 cut(s) 540
FatI CATG 5 cut(s) 88, 151, 220, 755, 889
FauNDI CATATG 1 cut(s) 797
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 3 cut(s) 16, 330, 381
Fnu4HI GCNGC 2 cut(s) 436, 439
FokI GGATG 4 cut(s) 296, 554, 603, 630
Fsp4HI GCNGC 2 cut(s) 436, 439
FspBI CTAG 1 cut(s) 500
GluI GCNGC 2 cut(s) 436, 439
HaeIII GGCC 3 cut(s) 205, 435, 514
HapII CCGG 1 cut(s) 739
HgaI GACGC 1 cut(s) 613
Hin1II CATG 5 cut(s) 92, 155, 224, 759, 893
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 8 cut(s) 323, 503, 683, 688, 921, 938, 1068, 1078
HpaII CCGG 1 cut(s) 739
HphI GGTGA 2 cut(s) 683, 683
Hpy166II GTNNAC 6 cut(s) 17, 313, 331, 342, 382, 633
Hpy188I TCNGA 6 cut(s) 107, 158, 258, 272, 445, 508
Hpy8I GTNNAC 6 cut(s) 17, 313, 331, 342, 382, 633
HpyAV CCTTC 1 cut(s) 424
HpyCH4III ACNGT 6 cut(s) 199, 301, 339, 355, 826, 1049
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 7 cut(s) 43, 80, 134, 277, 482, 633, 655
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 211
HpyF3I CTNAG 4 cut(s) 29, 442, 454, 810
HpySE526I ACGT 1 cut(s) 460
Hsp92II CATG 5 cut(s) 92, 155, 224, 759, 893
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 3 cut(s) 286, 746, 873
LmnI GCTCC 1 cut(s) 408
LweI GCATC 3 cut(s) 67, 454, 874
MaeI CTAG 1 cut(s) 500
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 2 cut(s) 671, 689
MalI GATC 3 cut(s) 288, 748, 875
MbiI CCGCTC 1 cut(s) 441
MboI GATC 3 cut(s) 286, 746, 873
MboII GAAGA 7 cut(s) 558, 585, 597, 613, 971, 1066, 1069
MflI RGATCY 1 cut(s) 746
MhlI GDGCHC 2 cut(s) 635, 1008
MlsI TGGCCA 1 cut(s) 514
MluCI AATT 4 cut(s) 47, 413, 611, 785
MluNI TGGCCA 1 cut(s) 514
MlyI GAGTC 3 cut(s) 677, 697, 1062
MmeI TCCRAC 2 cut(s) 136, 1031
Mox20I TGGCCA 1 cut(s) 514
MscI TGGCCA 1 cut(s) 514
MseI TTAA 1 cut(s) 38
MslI CAYNNNNRTG 2 cut(s) 225, 798
Msp20I TGGCCA 1 cut(s) 514
MspI CCGG 1 cut(s) 739
MspR9I CCNGG 4 cut(s) 21, 320, 370, 739
Mva1269I GAATGC 1 cut(s) 279
MvaI CCWGG 3 cut(s) 21, 320, 370
MwoI GCNNNNNNNGC 2 cut(s) 140, 211
NciI CCSGG 1 cut(s) 739
NcoI CCATGG 1 cut(s) 889
NdeI CATATG 1 cut(s) 797
NdeII GATC 3 cut(s) 286, 746, 873
NlaIII CATG 5 cut(s) 92, 155, 224, 759, 893
NlaIV GGNNCC 4 cut(s) 249, 390, 528, 773
NmuCI GTSAC 2 cut(s) 671, 689
NspI RCATGY 3 cut(s) 92, 155, 759
OliI CACNNNNGTG 1 cut(s) 798
PaeR7I CTCGAG 1 cut(s) 685
PciI ACATGT 3 cut(s) 88, 151, 755
PctI GAATGC 1 cut(s) 279
PfeI GAWTC 5 cut(s) 323, 503, 921, 938, 1078
PflMI CCANNNNNTGG 1 cut(s) 826
PkrI GCNGC 2 cut(s) 437, 440
PleI GAGTC 3 cut(s) 677, 696, 1062
PpsI GAGTC 3 cut(s) 677, 696, 1062
Ppu21I YACGTR 1 cut(s) 461
PscI ACATGT 3 cut(s) 88, 151, 755
PshAI GACNNNNGTC 1 cut(s) 687
PshBI ATTAAT 1 cut(s) 38
Psp6I CCWGG 3 cut(s) 19, 318, 368
PspGI CCWGG 3 cut(s) 19, 318, 368
PspN4I GGNNCC 4 cut(s) 249, 390, 528, 773
PspPI GGNCC 5 cut(s) 203, 297, 305, 433, 527
PspXI VCTCGAGB 1 cut(s) 685
PsuI RGATCY 1 cut(s) 746
RsaI GTAC 5 cut(s) 55, 236, 341, 459, 569
RsaNI GTAC 5 cut(s) 54, 235, 340, 458, 568
RseI CAYNNNNRTG 2 cut(s) 225, 798
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 2 cut(s) 436, 439
Sau3AI GATC 3 cut(s) 286, 746, 873
Sau96I GGNCC 5 cut(s) 203, 297, 305, 433, 527
SchI GAGTC 3 cut(s) 677, 697, 1062
ScrFI CCNGG 4 cut(s) 21, 320, 370, 739
SduI GDGCHC 2 cut(s) 635, 1008
SfaNI GCATC 3 cut(s) 67, 454, 874
SfcI CTRYAG 2 cut(s) 621, 1045
Sfr274I CTCGAG 1 cut(s) 685
SinI GGWCC 3 cut(s) 297, 305, 527
SlaI CTCGAG 1 cut(s) 685
SmiMI CAYNNNNRTG 2 cut(s) 225, 798
SmlI CTYRAG 1 cut(s) 685
SmoI CTYRAG 1 cut(s) 685
Sse9I AATT 4 cut(s) 47, 413, 611, 785
SsiI CCGC 2 cut(s) 436, 439
SspI AATATT 1 cut(s) 555
SspMI CTAG 1 cut(s) 500
StyD4I CCNGG 4 cut(s) 19, 318, 368, 737
StyI CCWWGG 2 cut(s) 392, 889
TaaI ACNGT 6 cut(s) 199, 301, 339, 355, 826, 1049
TaiI ACGT 1 cut(s) 463
TaqI TCGA 2 cut(s) 686, 705
TasI AATT 4 cut(s) 47, 413, 611, 785
TatI WGTACW 2 cut(s) 234, 339
TauI GCSGC 2 cut(s) 438, 441
TfiI GAWTC 5 cut(s) 323, 503, 921, 938, 1078
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 4 cut(s) 202, 875, 984, 1032
TseFI GTSAC 2 cut(s) 671, 689
Tsp45I GTSAC 2 cut(s) 671, 689
TspDTI ATGAA 3 cut(s) 279, 547, 605
TspGWI ACGGA 1 cut(s) 1080
TspRI CASTG 4 cut(s) 202, 875, 984, 1032
Van91I CCANNNNNTGG 1 cut(s) 826
VneI GTGCAC 1 cut(s) 631
VpaK11BI GGWCC 3 cut(s) 297, 305, 527
VspI ATTAAT 1 cut(s) 38
XagI CCTNNNNNAGG 1 cut(s) 624
XapI RAATTY 3 cut(s) 413, 611, 785
XceI RCATGY 3 cut(s) 92, 155, 759
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XhoI CTCGAG 1 cut(s) 685
XmiI GTMKAC 3 cut(s) 16, 330, 381
XspI CTAG 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.