RLG00000036654

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019422
Physical Location & Seq
Reverse (-)
82964149 .. 82965591
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036654

Sequence Viewer

Length: 1128 bp
ATGGCTCTCCGCAAAGCACTTGGAAAGCTGTCCAGGACTTTGAGGAGGTTCAATACAACAGAAGCAACTGGACATGACATTGGGAAGCTCAACATAACATTGAGGAGGTTCAACACGACTGGCGCATACAAACATGATGGTGAAAAGCTCACGACGAGAAGGTTCAACATAACCGGGGGGCACAAACATGATGGGAAGCTCATCAGGCACACTAACCTGAGAAGGTTCAATACCATTGGGGAAAATGAACTTGATGACAAGGAAGATAGGTACAAATTCTGGGGTCCGTACCTGAGTGATAAAGTCAGGGAGCAAGGCAAAGATCAATGCTGGGCAATAGGGCCTGCCGAGTGCCTAGAAGCCATCTACAAGCTGTACACTGGGGAGACGGTGGTCGTATCTCCACAGCATATACTAGATAGGGCTCCAAGAGCGAAGGATCAAAGTAAACTGGAGAAGTTTGAAAAGGGGGAGGGCTCAGGGGGAGGCTCGGTTATGGATGCATTCAAATTCATGGAAACTGATGGAGTTGCCCTTGAATCAGACTGGCCCCATGCAAAGGGACCCATCAATGAGGAAGGAAGGAAAATTAAAATAGGAGGATACAGAGTGGTGAAGGGAAGAACAAAAATAAAGAAAGTCGTCAAGCTACACCCATCTGTAGGATGCATTGCAGTTCATCCCATTGAACAATTTTACTCGAGTGACATAATTGAATCAAGACACTCAGAATTTTTTGAGACAGTCAAATGGGATGATAATAAGTTCCCTATGTGTGAAGTTCAGAATTTTTCTTGCCCATACCTAAAGAAGCATGTAGTGGGATTCTGTCACTACTGTGGATACACCAGTGGGTTTCACACAGTTGTGCTGAGTGGATACGACACGCGAACTGCTGGCAAACACCACTGGATATTCAGAAACACCAGGGGGGCACAGTGGGGGGTCAATGGCTATGGAATGATGAAAATGACTGAATCAGAAGAAGATATTGGAGACAACGAGGTTGATGAGACAGTAAGAAAGGGGCTGCCACTTGGCCTATTGAACATTGAGCAATTTGCTGTGTATCCTATTCCACACCACAGTTGGAAGAAACGGGAGGGACTTGAATGGAAGCAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

376

Amino Acids

42.93

Weight (kDa)

9.07

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 101 - 241 6.9e-08 Papain family cysteine protease
Peptidase_C1 PF00112 279 - 328 5.2e-06 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019422)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0010411
rosa_laevigata RLG00000036650 RLG00000036654
rosa_multiflora Rmu_sc0003323.1_g000010
rosa_roxburghii Rroxscaffold_2G00126230
rosa_rugosa Rorug05G0450700
rosa_samantha Rh2CG286000
rosa_wichuraiana Rw5G047110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 889
AciI CCGC 1 cut(s) 10
AclWI GGATC 1 cut(s) 447
AcsI RAATTY 4 cut(s) 275, 509, 731, 787
AfaI GTAC 3 cut(s) 272, 290, 377
AfiI CCNNNNNNNGG 2 cut(s) 559, 662
AjnI CCWGG 2 cut(s) 32, 926
AjuI GAANNNNNNNTTGG 2 cut(s) 975, 1007
AleI CACNNNNGTG 2 cut(s) 837, 866
AluBI AGCT 6 cut(s) 28, 88, 148, 199, 373, 649
AluI AGCT 6 cut(s) 28, 88, 148, 199, 373, 649
Alw26I GTCTC 4 cut(s) 380, 734, 990, 1007
AlwI GGATC 1 cut(s) 447
Ama87I CYCGRG 1 cut(s) 700
AoxI GGCC 3 cut(s) 341, 548, 1039
ApeKI GCWGC 1 cut(s) 1030
ApoI RAATTY 4 cut(s) 275, 509, 731, 787
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 4 cut(s) 284, 341, 549, 563
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 152, 625
AvaI CYCGRG 1 cut(s) 700
AvaII GGWCC 2 cut(s) 284, 563
BaeGI GKGCMC 2 cut(s) 183, 937
BaeI ACNNNNGTAYC 2 cut(s) 835, 868
BanII GRGCYC 2 cut(s) 427, 479
BarI GAAGNNNNNNTAC 2 cut(s) 214, 246
BbvI GCAGC 1 cut(s) 1017
BccI CCATC 6 cut(s) 131, 185, 371, 518, 575, 664
BciT130I CCWGG 2 cut(s) 34, 928
BciVI GTATCC 4 cut(s) 596, 836, 872, 1080
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 4 cut(s) 380, 734, 990, 1007
BfaI CTAG 2 cut(s) 356, 416
BfmI CTRYAG 1 cut(s) 660
BfuI GTATCC 4 cut(s) 596, 836, 872, 1080
BisI GCNGC 1 cut(s) 1031
BlsI GCNGC 1 cut(s) 1032
Bme1390I CCNGG 3 cut(s) 34, 175, 928
Bme18I GGWCC 2 cut(s) 284, 563
BmeT110I CYCGRG 1 cut(s) 700
BmgT120I GGNCC 4 cut(s) 284, 341, 549, 563
BmiI GGNNCC 5 cut(s) 285, 426, 551, 564, 565
BmrFI CCNGG 3 cut(s) 34, 175, 928
BmrI ACTGGG 1 cut(s) 390
BmsI GCATC 2 cut(s) 490, 656
BmuI ACTGGG 1 cut(s) 390
BoxI GACNNNNGTC 1 cut(s) 392
BpmI CTGGAG 1 cut(s) 473
Bpu10I CCTNAGC 1 cut(s) 478
BpuMI CCSGG 1 cut(s) 175
BsaJI CCNNGG 2 cut(s) 174, 927
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 2 cut(s) 559, 662
Bse1I ACTGG 7 cut(s) 73, 124, 385, 456, 551, 849, 914
Bse3DI GCAATG 1 cut(s) 669
BseBI CCWGG 2 cut(s) 34, 928
BseDI CCNNGG 2 cut(s) 174, 927
BseGI GGATG 4 cut(s) 505, 671, 679, 760
BseLI CCNNNNNNNGG 2 cut(s) 559, 662
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 5 cut(s) 209, 284, 492, 741, 863
BseNI ACTGG 7 cut(s) 73, 124, 385, 456, 551, 849, 914
BseRI GAGGAG 2 cut(s) 58, 118
BseSI GKGCMC 2 cut(s) 183, 937
BseXI GCAGC 1 cut(s) 1017
BseYI CCCAGC 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 889
BshFI GGCC 3 cut(s) 343, 550, 1041
BsiHKCI CYCGRG 1 cut(s) 700
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 2 cut(s) 576, 1119
BslI CCNNNNNNNGG 2 cut(s) 559, 662
BsmAI GTCTC 4 cut(s) 380, 734, 990, 1007
BsmBI CGTCTC 1 cut(s) 380
BsmFI GGGAC 2 cut(s) 576, 1119
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 3 cut(s) 343, 550, 1041
BsoBI CYCGRG 1 cut(s) 700
Bsp1286I GDGCHC 4 cut(s) 183, 427, 479, 937
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 2 cut(s) 322, 439
BspACI CCGC 1 cut(s) 10
BspANI GGCC 3 cut(s) 343, 550, 1041
BspCNI CTCAG 5 cut(s) 210, 285, 491, 740, 864
BspFNI CGCG 1 cut(s) 889
BspLI GGNNCC 5 cut(s) 285, 426, 551, 564, 565
BspPI GGATC 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 669
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 7 cut(s) 73, 124, 385, 456, 551, 849, 914
BssECI CCNNGG 2 cut(s) 174, 927
BssMI GATC 2 cut(s) 322, 439
Bst2UI CCWGG 2 cut(s) 34, 928
Bst4CI ACNGT 7 cut(s) 391, 745, 839, 865, 939, 1018, 1088
BstAUI TGTACA 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 345, 898
BstDEI CTNAG 5 cut(s) 218, 293, 478, 727, 872
BstF5I GGATG 4 cut(s) 505, 671, 679, 760
BstFNI CGCG 1 cut(s) 889
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 2 cut(s) 325, 442
BstMAI GTCTC 4 cut(s) 380, 734, 990, 1007
BstMBI GATC 2 cut(s) 322, 439
BstMWI GCNNNNNNNGC 2 cut(s) 205, 431
BstNI CCWGG 2 cut(s) 34, 928
BstNSI RCATGY 1 cut(s) 818
BstPAI GACNNNNGTC 1 cut(s) 392
BstSCI CCNGG 3 cut(s) 32, 173, 926
BstSFI CTRYAG 1 cut(s) 660
BstSLI GKGCMC 2 cut(s) 183, 937
BstUI CGCG 1 cut(s) 889
BstV1I GCAGC 1 cut(s) 1017
BsuI GTATCC 4 cut(s) 596, 836, 872, 1080
BsuRI GGCC 3 cut(s) 343, 550, 1041
BtsCI GGATG 4 cut(s) 505, 671, 679, 760
BtsIMutI CAGTG 4 cut(s) 378, 856, 907, 944
Cac8I GCNNGC 2 cut(s) 345, 898
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 4 cut(s) 284, 341, 549, 563
Csp6I GTAC 3 cut(s) 271, 289, 376
CviAII CATG 6 cut(s) 74, 134, 188, 514, 554, 815
CviQI GTAC 3 cut(s) 271, 289, 376
DdeI CTNAG 5 cut(s) 218, 293, 478, 727, 872
DpnI GATC 2 cut(s) 324, 441
DpnII GATC 2 cut(s) 322, 439
Eco24I GRGCYC 2 cut(s) 427, 479
Eco47I GGWCC 2 cut(s) 284, 563
Eco88I CYCGRG 1 cut(s) 700
EcoO109I RGGNCCY 2 cut(s) 341, 563
EcoRII CCWGG 2 cut(s) 32, 926
EcoT22I ATGCAT 2 cut(s) 505, 671
EcoT38I GRGCYC 2 cut(s) 427, 479
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 6 cut(s) 77, 137, 191, 517, 557, 818
FaqI GGGAC 2 cut(s) 576, 1119
FatI CATG 6 cut(s) 73, 133, 187, 513, 553, 814
Fnu4HI GCNGC 1 cut(s) 1031
FokI GGATG 4 cut(s) 512, 666, 678, 767
FriOI GRGCYC 2 cut(s) 427, 479
Fsp4HI GCNGC 1 cut(s) 1031
FspBI CTAG 2 cut(s) 356, 416
GlaI GCGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 1031
GsaI CCCAGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 473
HaeIII GGCC 3 cut(s) 343, 550, 1041
HapII CCGG 1 cut(s) 174
HhaI GCGC 1 cut(s) 125
Hin1II CATG 6 cut(s) 77, 137, 191, 517, 557, 818
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 4 cut(s) 539, 716, 825, 977
HpaII CCGG 1 cut(s) 174
HphI GGTGA 2 cut(s) 152, 625
Hpy166II GTNNAC 2 cut(s) 378, 449
Hpy188I TCNGA 5 cut(s) 544, 730, 786, 920, 982
Hpy188III TCNNGA 2 cut(s) 151, 720
Hpy8I GTNNAC 2 cut(s) 378, 449
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 6 cut(s) 153, 216, 430, 572, 576, 610
HpyCH4III ACNGT 7 cut(s) 391, 745, 839, 865, 939, 1018, 1088
HpyCH4V TGCA 4 cut(s) 503, 557, 669, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 431
HpyF3I CTNAG 5 cut(s) 218, 293, 478, 727, 872
Hsp92II CATG 6 cut(s) 77, 137, 191, 517, 557, 818
HspAI GCGC 1 cut(s) 123
KflI GGGWCCC 1 cut(s) 563
Kzo9I GATC 2 cut(s) 322, 439
LmnI GCTCC 2 cut(s) 310, 430
Lsp1109I GCAGC 1 cut(s) 1017
LweI GCATC 2 cut(s) 490, 656
MaeI CTAG 2 cut(s) 356, 416
MaeIII GTNAC 2 cut(s) 704, 830
MalI GATC 2 cut(s) 324, 441
MboI GATC 2 cut(s) 322, 439
MboII GAAGA 5 cut(s) 275, 633, 995, 998, 1105
MhlI GDGCHC 4 cut(s) 183, 427, 479, 937
MluCI AATT 8 cut(s) 275, 509, 588, 692, 711, 731, 787, 1058
MmeI TCCRAC 1 cut(s) 1070
Mph1103I ATGCAT 2 cut(s) 505, 671
MseI TTAA 1 cut(s) 591
MslI CAYNNNNRTG 4 cut(s) 138, 186, 837, 866
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 3 cut(s) 34, 175, 928
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 2 cut(s) 34, 928
MvnI CGCG 1 cut(s) 889
MwoI GCNNNNNNNGC 2 cut(s) 205, 431
NciI CCSGG 1 cut(s) 175
NdeII GATC 2 cut(s) 322, 439
NlaIII CATG 6 cut(s) 77, 137, 191, 517, 557, 818
NlaIV GGNNCC 5 cut(s) 285, 426, 551, 564, 565
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 2 cut(s) 704, 830
NsiI ATGCAT 2 cut(s) 505, 671
NspI RCATGY 1 cut(s) 818
OliI CACNNNNGTG 2 cut(s) 837, 866
PaeR7I CTCGAG 1 cut(s) 700
PctI GAATGC 1 cut(s) 503
PfeI GAWTC 4 cut(s) 539, 716, 825, 977
PfoI TCCNGGA 1 cut(s) 32
PkrI GCNGC 1 cut(s) 1032
PpuMI RGGWCCY 1 cut(s) 563
PshAI GACNNNNGTC 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 563
Psp6I CCWGG 2 cut(s) 32, 926
PspFI CCCAGC 1 cut(s) 330
PspGI CCWGG 2 cut(s) 32, 926
PspN4I GGNNCC 5 cut(s) 285, 426, 551, 564, 565
PspPI GGNCC 4 cut(s) 284, 341, 549, 563
PspPPI RGGWCCY 1 cut(s) 563
PspXI VCTCGAGB 1 cut(s) 700
RsaI GTAC 3 cut(s) 272, 290, 377
RsaNI GTAC 3 cut(s) 271, 289, 376
RseI CAYNNNNRTG 4 cut(s) 138, 186, 837, 866
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 1 cut(s) 1031
Sau3AI GATC 2 cut(s) 322, 439
Sau96I GGNCC 4 cut(s) 284, 341, 549, 563
ScrFI CCNGG 3 cut(s) 34, 175, 928
SduI GDGCHC 4 cut(s) 183, 427, 479, 937
SfaNI GCATC 2 cut(s) 490, 656
SfcI CTRYAG 1 cut(s) 660
Sfr274I CTCGAG 1 cut(s) 700
SinI GGWCC 2 cut(s) 284, 563
SlaI CTCGAG 1 cut(s) 700
SmiMI CAYNNNNRTG 4 cut(s) 138, 186, 837, 866
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
Sse9I AATT 8 cut(s) 275, 509, 588, 692, 711, 731, 787, 1058
SsiI CCGC 1 cut(s) 10
SspMI CTAG 2 cut(s) 356, 416
StyD4I CCNGG 3 cut(s) 32, 173, 926
TaaI ACNGT 7 cut(s) 391, 745, 839, 865, 939, 1018, 1088
TaqI TCGA 1 cut(s) 701
TasI AATT 8 cut(s) 275, 509, 588, 692, 711, 731, 787, 1058
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 4 cut(s) 539, 716, 825, 977
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 4 cut(s) 385, 856, 914, 944
TseFI GTSAC 2 cut(s) 704, 830
TseI GCWGC 1 cut(s) 1030
Tsp45I GTSAC 2 cut(s) 704, 830
TspDTI ATGAA 4 cut(s) 261, 502, 668, 980
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 4 cut(s) 385, 856, 914, 944
VpaK11BI GGWCC 2 cut(s) 284, 563
XapI RAATTY 4 cut(s) 275, 509, 731, 787
XceI RCATGY 1 cut(s) 818
XcmI CCANNNNNNNNNTGG 1 cut(s) 1086
XhoI CTCGAG 1 cut(s) 700
XspI CTAG 2 cut(s) 356, 416
Zsp2I ATGCAT 2 cut(s) 505, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.