RchiOBHm_Chr5g0014731

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018608
Physical Location & Seq
Reverse (-)
10142143 .. 10143747
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29518

Sequence Viewer

Length: 249 bp
ATGGGATCAGTCAGTCTTTCGCTTTCTTTTGCGAGTTTTTATGCCGGACATGGTCACTCTCTGTTACCAGGTGCTGGAGATTTTGCTTGGGTCCACAGATTACTCGACTTGGCGGACATTTGGACCCTCTGCTGCATCTTCGCTGAGATGGTTATCGGGGATGTACTGTTTGTTAGAAGTACTAAGATTCTCCCTAGTAGGGCTTTGGGGATCTGGATAAAAACAATTTATTTACTGGGATCTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.88

Weight (kDa)

6.8

Isoelectric Point (pI)

23.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 74
AciI CCGC 1 cut(s) 113
AclWI GGATC 3 cut(s) 13, 218, 247
AfaI GTAC 2 cut(s) 165, 181
AfiI CCNNNNNNNGG 2 cut(s) 74, 199
AjnI CCWGG 1 cut(s) 67
AlwI GGATC 3 cut(s) 13, 218, 247
AlwNI CAGNNNCTG 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 132
AspS9I GGNCC 2 cut(s) 91, 123
AvaII GGWCC 2 cut(s) 91, 123
BbvI GCAGC 1 cut(s) 119
BccI CCATC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 69
BfaI CTAG 1 cut(s) 195
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
BmcAI AGTACT 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 2 cut(s) 91, 123
BmgT120I GGNCC 2 cut(s) 91, 123
BmiI GGNNCC 2 cut(s) 92, 125
BmrFI CCNGG 1 cut(s) 69
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 1 cut(s) 144
BmuI ACTGGG 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 152
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 199
Bse1I ACTGG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 152
BseBI CCWGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 166
BseJI GATNNNNATC 1 cut(s) 152
BseLI CCNNNNNNNGG 2 cut(s) 74, 199
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 74, 199
Bsp143I GATC 3 cut(s) 5, 210, 239
BspACI CCGC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 92, 125
BspPI GGATC 3 cut(s) 13, 218, 247
BsrI ACTGG 1 cut(s) 240
BssMI GATC 3 cut(s) 5, 210, 239
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 144, 183
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 3 cut(s) 8, 213, 242
BstMBI GATC 3 cut(s) 5, 210, 239
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 119
BstX2I RGATCY 2 cut(s) 210, 239
BstYI RGATCY 2 cut(s) 210, 239
BtsCI GGATG 1 cut(s) 166
CaiI CAGNNNCTG 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 91, 123
CsiI ACCWGGT 1 cut(s) 67
Csp6I GTAC 2 cut(s) 164, 180
CviAII CATG 1 cut(s) 50
CviJI RGCY 1 cut(s) 203
CviKI_1 RGCY 1 cut(s) 203
CviQI GTAC 2 cut(s) 164, 180
DdeI CTNAG 2 cut(s) 144, 183
DpnI GATC 3 cut(s) 7, 212, 241
DpnII GATC 3 cut(s) 5, 210, 239
EciI GGCGGA 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 91, 123
EcoRII CCWGG 1 cut(s) 67
FaeI CATG 1 cut(s) 53
FaiI YATR 2 cut(s) 42, 51
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 133
FspBI CTAG 1 cut(s) 195
GluI GCNGC 1 cut(s) 133
GsuI CTGGAG 1 cut(s) 96
HapII CCGG 1 cut(s) 45
Hin1II CATG 1 cut(s) 53
HinfI GANTC 1 cut(s) 187
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 214, 243
Hpy8I GTNNAC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 135
HpyF3I CTNAG 2 cut(s) 144, 183
Hsp92II CATG 1 cut(s) 53
Kzo9I GATC 3 cut(s) 5, 210, 239
LpnPI CCDG 7 cut(s) 54, 58, 60, 81, 199, 221, 228
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 1 cut(s) 144
MabI ACCWGGT 1 cut(s) 67
MaeI CTAG 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 53, 63
MalI GATC 3 cut(s) 7, 212, 241
MboI GATC 3 cut(s) 5, 210, 239
MboII GAAGA 1 cut(s) 130
MflI RGATCY 2 cut(s) 210, 239
MluCI AATT 1 cut(s) 225
MnlI CCTC 1 cut(s) 137
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
NdeII GATC 3 cut(s) 5, 210, 239
NlaIII CATG 1 cut(s) 53
NlaIV GGNNCC 2 cut(s) 92, 125
NmuCI GTSAC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 187
PflFI GACNNNGTC 1 cut(s) 51
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 92, 125
PspPI GGNCC 2 cut(s) 91, 123
PstNI CAGNNNCTG 1 cut(s) 74
PsuI RGATCY 2 cut(s) 210, 239
PsyI GACNNNGTC 1 cut(s) 51
RsaI GTAC 2 cut(s) 165, 181
RsaNI GTAC 2 cut(s) 164, 180
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 3 cut(s) 5, 210, 239
Sau96I GGNCC 2 cut(s) 91, 123
ScaI AGTACT 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 69
SetI ASST 1 cut(s) 73
SexAI ACCWGGT 1 cut(s) 67
SfaNI GCATC 1 cut(s) 144
SinI GGWCC 2 cut(s) 91, 123
Sse9I AATT 1 cut(s) 225
SsiI CCGC 1 cut(s) 113
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 105
TasI AATT 1 cut(s) 225
TatI WGTACW 2 cut(s) 163, 179
TfiI GAWTC 1 cut(s) 187
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 53
Tth111I GACNNNGTC 1 cut(s) 51
Van91I CCANNNNNTGG 1 cut(s) 74
VpaK11BI GGWCC 2 cut(s) 91, 123
XspI CTAG 1 cut(s) 195
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.