Rh1BG260300

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018608
Physical Location & Seq
Reverse (-)
39211063 .. 39223984
12922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG260300.1

Sequence Viewer

Length: 1128 bp
ATGGGATCAGTCAGTCTTTCGCTTTCTTTTGCGAGTTTTTATGCAGGACACGGTCACTCTCTGTTACCAGGTGCTGGAGATTTTGCTTGGGTCCACAGATTACTCGACTTGGCGGACATTTGGGCCCTCGGCTGCATCTTCGGTTTTCGCACGATTTACACCTCTACAATGTGGCTGGATTCTTGGACTAAGAATGAGATGGACCTGGGTTTCTTGGTATATAAATATGCAGTGCGCCTTGGCTTGTCTTCAAAGAGCTTTTGTGACCTTATCACTGATATGGGTTCTCATGGGTGTACAAAATGCAGCACAACTGAATCATCTAACGATATTGAGAAACAGGAGCTCGAGGAAGTGTCAGATGAAGATGAATTGTCATTTTTTGACACAAAAGAGTATTTTACTGAACCAAACATAAGTTGCGGGTTTGTGCAAGTTGTAAATAACACAAATAATATCAACAAACCTCGAAGTCAATTTAGTAATGTTGAGGAGATGCACACAGAAAAGGAAATTAATGATGTTAGATATCCACACATTGAAAGGAGAAAAGAGCTTCCTATTCCAGTTGAGAAGGAGAAAGGAGTCAGCCTTTGGTCCATGATTAAAGACAATGTGGGAAAGGATCTCACTCGAGTTTGTCTCCCTGTGTATTTTAATGAGCCAATATCATCTCTTCAGAAGTGTTGTGAGGACATGGAGTACTCGTATCTTTTGGATCGGGCATATGAGTATGGAAAAATGGGGAATAGTCTCCAAAGGATTCTAAATGTTGCTGCATTTGCGGTTTCTGGTTATGCATCATCAGAAGGGCGGCACTGTAAGCCATTCAATCCTTTGTTAGGTGAAACTTATGAAGCCGACTATCCAAATAAAGGAATTCGCTTCTTCTCTGAAAAGGATACCATTGGTTTGCAATCTTTTGCTGCTGGTGGAAAGTTATTGCAAGAAAAGCTCATAAGTTACTATGCAGGGTATCTGAAATCTTGCGATAGCTCTATTGATCTTGTTAATGTCCTGAAGCATGAGATTCAAGATGGGCAACTGAGCTTTAGAGGAAAAAGGGTACTTAAGAAAGATGGTGAAGAAGATGATCCAAATGTAAGCAATGCGAACAGTGCCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

375

Amino Acids

42.26

Weight (kDa)

5.07

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxysterol_BP PF01237 197 - 300 2.3e-40 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 74
AciI CCGC 4 cut(s) 113, 423, 785, 814
AclWI GGATC 4 cut(s) 13, 633, 726, 1088
AcsI RAATTY 1 cut(s) 879
AcuI CTGAAG 2 cut(s) 662, 1040
AfaI GTAC 3 cut(s) 298, 704, 1068
AfiI CCNNNNNNNGG 3 cut(s) 74, 842, 875
AflII CTTAAG 1 cut(s) 1070
AgsI TTSAA 4 cut(s) 252, 542, 832, 1034
AjnI CCWGG 2 cut(s) 67, 204
AluBI AGCT 6 cut(s) 258, 346, 556, 955, 996, 1050
AluI AGCT 6 cut(s) 258, 346, 556, 955, 996, 1050
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 2 cut(s) 647, 758
AlwI GGATC 4 cut(s) 13, 633, 726, 1088
AlwNI CAGNNNCTG 1 cut(s) 74
Ama87I CYCGRG 2 cut(s) 347, 633
AoxI GGCC 1 cut(s) 123
ApaI GGGCCC 1 cut(s) 127
ApeKI GCWGC 4 cut(s) 132, 306, 776, 926
ApoI RAATTY 1 cut(s) 879
AseI ATTAAT 1 cut(s) 516
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 5 cut(s) 91, 123, 124, 202, 597
AsuHPI GGTGA 2 cut(s) 857, 1094
AvaI CYCGRG 2 cut(s) 347, 633
AvaII GGWCC 3 cut(s) 91, 202, 597
BaeGI GKGCMC 1 cut(s) 127
BanII GRGCYC 2 cut(s) 127, 348
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 4 cut(s) 119, 318, 763, 913
BccI CCATC 3 cut(s) 193, 1031, 1073
BciT130I CCWGG 2 cut(s) 69, 206
BciVI GTATCC 1 cut(s) 895
BcoDI GTCTC 2 cut(s) 647, 758
BfrI CTTAAG 1 cut(s) 1070
BfuI GTATCC 1 cut(s) 895
BisI GCNGC 5 cut(s) 133, 307, 777, 815, 927
BlsI GCNGC 5 cut(s) 134, 308, 778, 816, 928
BmcAI AGTACT 1 cut(s) 704
Bme1390I CCNGG 2 cut(s) 69, 206
Bme18I GGWCC 3 cut(s) 91, 202, 597
BmeT110I CYCGRG 2 cut(s) 347, 633
BmgT120I GGNCC 5 cut(s) 91, 123, 124, 202, 597
BmiI GGNNCC 2 cut(s) 92, 125
BmrFI CCNGG 2 cut(s) 69, 206
BmsI GCATC 3 cut(s) 144, 486, 809
BpiI GAAGAC 1 cut(s) 240
BplI GAGNNNNNCTC 2 cut(s) 627, 659
BpmI CTGGAG 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 127, 205, 238
BsaXI ACNNNNNCTCC 2 cut(s) 692, 722
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 842, 875
Bse1I ACTGG 1 cut(s) 566
Bse3DI GCAATG 1 cut(s) 1114
BseBI CCWGG 2 cut(s) 69, 206
BseDI CCNNGG 3 cut(s) 127, 205, 238
BseLI CCNNNNNNNGG 3 cut(s) 74, 842, 875
BseMI GCAATG 1 cut(s) 1114
BseMII CTCAG 1 cut(s) 1037
BseNI ACTGG 1 cut(s) 566
BseRI GAGGAG 1 cut(s) 506
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 4 cut(s) 119, 318, 763, 913
BshFI GGCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 348
BsiHKCI CYCGRG 2 cut(s) 347, 633
BslI CCNNNNNNNGG 3 cut(s) 74, 842, 875
BsmAI GTCTC 2 cut(s) 647, 758
BsnI GGCC 1 cut(s) 125
BsoBI CYCGRG 2 cut(s) 347, 633
Bsp120I GGGCCC 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 127, 348
Bsp1407I TGTACA 1 cut(s) 296
Bsp143I GATC 5 cut(s) 5, 625, 718, 1003, 1093
BspACI CCGC 4 cut(s) 113, 423, 785, 814
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 1038
BspLI GGNNCC 2 cut(s) 92, 125
BspPI GGATC 4 cut(s) 13, 633, 726, 1088
BspTI CTTAAG 1 cut(s) 1070
BsrDI GCAATG 1 cut(s) 1114
BsrGI TGTACA 1 cut(s) 296
BsrI ACTGG 1 cut(s) 566
BssECI CCNNGG 3 cut(s) 127, 205, 238
BssMI GATC 5 cut(s) 5, 625, 718, 1003, 1093
BssT1I CCWWGG 1 cut(s) 238
Bst2UI CCWGG 2 cut(s) 69, 206
Bst4CI ACNGT 3 cut(s) 53, 821, 1118
Bst6I CTCTTC 1 cut(s) 681
BstAFI CTTAAG 1 cut(s) 1070
BstAUI TGTACA 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 189, 1046
BstENI CCTNNNNNAGG 1 cut(s) 840
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 5 cut(s) 8, 628, 721, 1006, 1096
BstMAI GTCTC 2 cut(s) 647, 758
BstMBI GATC 5 cut(s) 5, 625, 718, 1003, 1093
BstMWI GCNNNNNNNGC 4 cut(s) 782, 823, 952, 1118
BstNI CCWGG 2 cut(s) 69, 206
BstSCI CCNGG 2 cut(s) 67, 204
BstSLI GKGCMC 1 cut(s) 127
BstV1I GCAGC 4 cut(s) 119, 318, 763, 913
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
BsuI GTATCC 1 cut(s) 895
BsuRI GGCC 1 cut(s) 125
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 4 cut(s) 237, 273, 817, 1123
CaiI CAGNNNCTG 1 cut(s) 74
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 5 cut(s) 91, 123, 124, 202, 597
CsiI ACCWGGT 1 cut(s) 67
Csp6I GTAC 3 cut(s) 297, 703, 1067
CviAII CATG 4 cut(s) 290, 601, 697, 1025
CviQI GTAC 3 cut(s) 297, 703, 1067
DdeI CTNAG 2 cut(s) 189, 1046
DpnI GATC 5 cut(s) 7, 627, 720, 1005, 1095
DpnII GATC 5 cut(s) 5, 625, 718, 1003, 1093
Eam1104I CTCTTC 1 cut(s) 681
EarI CTCTTC 1 cut(s) 681
EciI GGCGGA 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 238
Eco24I GRGCYC 2 cut(s) 127, 348
Eco32I GATATC 1 cut(s) 530
Eco47I GGWCC 3 cut(s) 91, 202, 597
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 2 cut(s) 662, 1040
Eco88I CYCGRG 2 cut(s) 347, 633
EcoICRI GAGCTC 1 cut(s) 346
EcoNI CCTNNNNNAGG 1 cut(s) 840
EcoO109I RGGNCCY 1 cut(s) 124
EcoRI GAATTC 1 cut(s) 879
EcoRII CCWGG 2 cut(s) 67, 204
EcoRV GATATC 1 cut(s) 530
EcoT14I CCWWGG 1 cut(s) 238
EcoT22I ATGCAT 1 cut(s) 802
EcoT38I GRGCYC 2 cut(s) 127, 348
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 4 cut(s) 293, 604, 700, 1028
FatI CATG 4 cut(s) 289, 600, 696, 1024
FauI CCCGC 1 cut(s) 416
FauNDI CATATG 1 cut(s) 727
Fnu4HI GCNGC 5 cut(s) 133, 307, 777, 815, 927
FriOI GRGCYC 2 cut(s) 127, 348
Fsp4HI GCNGC 5 cut(s) 133, 307, 777, 815, 927
GlaI GCGC 1 cut(s) 236
GluI GCNGC 5 cut(s) 133, 307, 777, 815, 927
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 1 cut(s) 125
HhaI GCGC 1 cut(s) 237
Hin1II CATG 4 cut(s) 293, 604, 700, 1028
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HinfI GANTC 5 cut(s) 179, 317, 585, 763, 1030
HphI GGTGA 2 cut(s) 857, 1094
Hpy166II GTNNAC 2 cut(s) 94, 297
Hpy188I TCNGA 5 cut(s) 361, 681, 808, 895, 981
Hpy188III TCNNGA 2 cut(s) 1018, 1034
Hpy8I GTNNAC 2 cut(s) 94, 297
HpyAV CCTTC 2 cut(s) 568, 803
HpyCH4III ACNGT 3 cut(s) 53, 821, 1118
HpyF10VI GCNNNNNNNGC 4 cut(s) 782, 823, 952, 1118
HpyF3I CTNAG 2 cut(s) 189, 1046
Hsp92II CATG 4 cut(s) 293, 604, 700, 1028
HspAI GCGC 1 cut(s) 235
Kzo9I GATC 5 cut(s) 5, 625, 718, 1003, 1093
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 4 cut(s) 119, 318, 763, 913
LweI GCATC 3 cut(s) 144, 486, 809
MabI ACCWGGT 1 cut(s) 67
MaeIII GTNAC 4 cut(s) 53, 63, 263, 962
MalI GATC 5 cut(s) 7, 627, 720, 1005, 1095
MboI GATC 5 cut(s) 5, 625, 718, 1003, 1093
MboII GAAGA 7 cut(s) 130, 240, 377, 668, 880, 1097, 1100
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 2 cut(s) 127, 348
MluCI AATT 4 cut(s) 371, 476, 513, 879
MlyI GAGTC 1 cut(s) 594
MnlI CCTC 7 cut(s) 137, 172, 343, 477, 484, 685, 1049
Mph1103I ATGCAT 1 cut(s) 802
MseI TTAA 5 cut(s) 516, 606, 657, 1011, 1071
MslI CAYNNNNRTG 1 cut(s) 278
MspCI CTTAAG 1 cut(s) 1070
MspR9I CCNGG 2 cut(s) 69, 206
MvaI CCWGG 2 cut(s) 69, 206
MwoI GCNNNNNNNGC 4 cut(s) 782, 823, 952, 1118
NdeI CATATG 1 cut(s) 727
NdeII GATC 5 cut(s) 5, 625, 718, 1003, 1093
NlaIII CATG 4 cut(s) 293, 604, 700, 1028
NlaIV GGNNCC 2 cut(s) 92, 125
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 2 cut(s) 53, 263
NsiI ATGCAT 1 cut(s) 802
PaeR7I CTCGAG 2 cut(s) 347, 633
PfeI GAWTC 4 cut(s) 179, 317, 763, 1030
PflFI GACNNNGTC 1 cut(s) 51
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 5 cut(s) 134, 308, 778, 816, 928
PleI GAGTC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 593
PshBI ATTAAT 1 cut(s) 516
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 67, 204
PspGI CCWGG 2 cut(s) 67, 204
PspN4I GGNNCC 2 cut(s) 92, 125
PspOMI GGGCCC 1 cut(s) 123
PspPI GGNCC 5 cut(s) 91, 123, 124, 202, 597
PspXI VCTCGAGB 2 cut(s) 347, 633
PstNI CAGNNNCTG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 625
PsyI GACNNNGTC 1 cut(s) 51
RsaI GTAC 3 cut(s) 298, 704, 1068
RsaNI GTAC 3 cut(s) 297, 703, 1067
RseI CAYNNNNRTG 1 cut(s) 278
SacI GAGCTC 1 cut(s) 348
SaqAI TTAA 5 cut(s) 516, 606, 657, 1011, 1071
SatI GCNGC 5 cut(s) 133, 307, 777, 815, 927
Sau3AI GATC 5 cut(s) 5, 625, 718, 1003, 1093
Sau96I GGNCC 5 cut(s) 91, 123, 124, 202, 597
ScaI AGTACT 1 cut(s) 704
SchI GAGTC 1 cut(s) 594
ScrFI CCNGG 2 cut(s) 69, 206
SduI GDGCHC 2 cut(s) 127, 348
SexAI ACCWGGT 1 cut(s) 67
SfaNI GCATC 3 cut(s) 144, 486, 809
Sfr274I CTCGAG 2 cut(s) 347, 633
SinI GGWCC 3 cut(s) 91, 202, 597
SlaI CTCGAG 2 cut(s) 347, 633
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 3 cut(s) 347, 633, 1070
SmoI CTYRAG 3 cut(s) 347, 633, 1070
Sse9I AATT 4 cut(s) 371, 476, 513, 879
SsiI CCGC 4 cut(s) 113, 423, 785, 814
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 2 cut(s) 67, 204
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 3 cut(s) 53, 821, 1118
TaqI TCGA 4 cut(s) 105, 348, 469, 634
TasI AATT 4 cut(s) 371, 476, 513, 879
TatI WGTACW 2 cut(s) 296, 702
TauI GCSGC 1 cut(s) 817
TfiI GAWTC 4 cut(s) 179, 317, 763, 1030
Tru1I TTAA 5 cut(s) 516, 606, 657, 1011, 1071
Tru9I TTAA 5 cut(s) 516, 606, 657, 1011, 1071
TscAI CASTG 4 cut(s) 237, 280, 824, 1123
TseFI GTSAC 2 cut(s) 53, 263
TseI GCWGC 4 cut(s) 132, 306, 776, 926
Tsp45I GTSAC 2 cut(s) 53, 263
TspDTI ATGAA 3 cut(s) 378, 384, 870
TspRI CASTG 4 cut(s) 237, 280, 824, 1123
Tth111I GACNNNGTC 1 cut(s) 51
Van91I CCANNNNNTGG 1 cut(s) 74
Vha464I CTTAAG 1 cut(s) 1070
VpaK11BI GGWCC 3 cut(s) 91, 202, 597
VspI ATTAAT 1 cut(s) 516
XagI CCTNNNNNAGG 1 cut(s) 840
XapI RAATTY 1 cut(s) 879
XhoI CTCGAG 2 cut(s) 347, 633
ZrmI AGTACT 1 cut(s) 704
Zsp2I ATGCAT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.