Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018608

Physical Location & Seq

Genomic Coordinates Forward (+)

21490665 .. 21495825

Gene Structure 5161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00301120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGGGTGGCATTTTCACATACACTTGGTGTGCATACATATTGGTCAAGCACAATGGTGTGCATACGGATAGACTCGAGCTCCTCCTCCTCACCATCACAATCCTCCCTCCTCCATTCTCAGGAGGAATGTGAAGCGCCGAGATCCCGACCTCAATCTAAAATTGAAGTAACAGCTCTGAATCCTGAGCCTGGCCTCGATCTGAGATTGGCAGAGTTGAAGAAATTTAAGAGGCTCCGAATCCTAAGCTCCCTCTCCACCTTGCTCAATAGCTCACTTTGGTCTTCTCCGCCCTCTGCTCCTCAACCCGCTGATTCAATCTCCGATCACGAAGACAACGGCTTACCAGAGGCTAGAATTTGGGGCGCTGGAGATTTTGCTTGGGTCCACAGATTACTAGACTTTGCGGACATTTGGGCCCTCGGCTGCATCTTCGTTGAGATGGTTACCGGGGATGTACTGTTTGTTGGAAGTACTAAGATTCTCCCAGGTTATGTGAAGGTGGAGAACTACTGGATAAAATTTTGTCCAGTAACTCCTTCTGGCAGGGGTGGAAGATACACAGAAGAAGATGCTAAACTTATTGTTGTGCAAATTTTAAATGTTATTGCCTATTGTCATCTTCAAGGTGTTGTGCATCGTGATCTAAAGCCAGAGGCTTTTAAGAAAATACTTGCTGAAAAGTTGATATTCTACTTTACTTTGCCACTTAGCAATCTTCTCAAGGACAACGTCGTGATGAGGGAGATGATAGGTATGGGAGAGGCAGCAATGGTTGATCAAAATTTGAGGCAGGATCGAGGAATGTGTAGTTCTCCAATTATCCGCCCTACTTCATCTAACGTCCTCAACTCTTGTATCCGCCCTTCATTGAAGATTTCAATTCTGAATGGAATTATCATGGGAGGTGGGGCTGGTGCTTCCATCCATGGTAGCTCCGTGTTGCAACTGAGAATTCGGTTTTTGCAATGTCAGAAACAGGTCTGGGACTTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

332

Amino Acids

36.86

Weight (kDa)

8.39

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	184 - 219	5.2e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018608)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0014731 RchiOBHm_Chr5g0079721 RchiOBHm_Chr6g0258861 RchiOBHm_Chr6g0258871
rosa_roxburghii	Rroxscaffold_4G00301120
rosa_rugosa	Rorug04G0188000 Rorug05G0418900
rosa_samantha	Rh1BG260300 Rh2BG436200 Rh7CG489800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	290, 309, 407, 826, 862
AclWI	GGATC	2 cut(s)	138, 804
AcsI	RAATTY	6 cut(s)	224, 357, 521, 594, 784, 954
AdeI	CACNNNGTG	1 cut(s)	29
AfaI	GTAC	2 cut(s)	459, 475
AfiI	CCNNNNNNNGG	2 cut(s)	121, 191
AgsI	TTSAA	6 cut(s)	167, 220, 318, 626, 874, 882
AjnI	CCWGG	2 cut(s)	190, 487
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	5 cut(s)	81, 176, 249, 273, 936
AluI	AGCT	5 cut(s)	81, 176, 249, 273, 936
Alw21I	GWGCWC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	138, 804
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	2 cut(s)	193, 417
ApaI	GGGCCC	1 cut(s)	421
ApeKI	GCWGC	2 cut(s)	426, 767
ApoI	RAATTY	6 cut(s)	224, 357, 521, 594, 784, 954
AspLEI	GCGC	2 cut(s)	139, 368
AspS9I	GGNCC	3 cut(s)	385, 417, 418
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	1 cut(s)	84
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	385
BaeGI	GKGCMC	1 cut(s)	421
BaeI	ACNNNNGTAYC	2 cut(s)	841, 874
BanII	GRGCYC	2 cut(s)	83, 421
BarI	GAAGNNNNNNTAC	2 cut(s)	850, 882
BbsI	GAAGAC	2 cut(s)	276, 339
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	413, 779
BccI	CCATC	3 cut(s)	103, 436, 932
BceAI	ACGGC	1 cut(s)	355
BciT130I	CCWGG	2 cut(s)	192, 489
BciVI	GTATCC	1 cut(s)	869
BclI	TGATCA	1 cut(s)	778
BcnI	CCSGG	1 cut(s)	451
BfaI	CTAG	3 cut(s)	354, 398, 997
BfoI	RGCGCY	2 cut(s)	140, 369
BfuI	GTATCC	1 cut(s)	869
BisI	GCNGC	2 cut(s)	427, 768
BlsI	GCNGC	2 cut(s)	428, 769
BmcAI	AGTACT	1 cut(s)	475
Bme1390I	CCNGG	3 cut(s)	192, 451, 489
Bme18I	GGWCC	1 cut(s)	385
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	3 cut(s)	385, 417, 418
BmiI	GGNNCC	3 cut(s)	236, 386, 419
BmrFI	CCNGG	3 cut(s)	192, 451, 489
BmsI	GCATC	3 cut(s)	438, 562, 646
BpiI	GAAGAC	2 cut(s)	276, 339
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	2 cut(s)	186, 245
BpuEI	CTTGAG	1 cut(s)	707
BpuMI	CCSGG	1 cut(s)	451
BsaJI	CCNNGG	4 cut(s)	421, 450, 487, 928
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 191
Bse1I	ACTGG	2 cut(s)	518, 530
Bse3DI	GCAATG	2 cut(s)	777, 974
BseBI	CCWGG	2 cut(s)	192, 489
BseDI	CCNNGG	4 cut(s)	421, 450, 487, 928
BseGI	GGATG	2 cut(s)	460, 924
BseLI	CCNNNNNNNGG	2 cut(s)	121, 191
BseMI	GCAATG	2 cut(s)	777, 974
BseMII	CTCAG	4 cut(s)	134, 177, 194, 941
BseNI	ACTGG	2 cut(s)	518, 530
BseRI	GAGGAG	5 cut(s)	73, 76, 79, 101, 291
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	2 cut(s)	413, 779
BshFI	GGCC	2 cut(s)	195, 419
BsiHKAI	GWGCWC	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	450
BslI	CCNNNNNNNGG	2 cut(s)	121, 191
BsnI	GGCC	2 cut(s)	195, 419
BsoBI	CYCGRG	1 cut(s)	76
Bsp120I	GGGCCC	1 cut(s)	417
Bsp1286I	GDGCHC	2 cut(s)	83, 421
Bsp143I	GATC	6 cut(s)	143, 199, 325, 643, 778, 796
Bsp19I	CCATGG	1 cut(s)	928
BspACI	CCGC	5 cut(s)	290, 309, 407, 826, 862
BspANI	GGCC	2 cut(s)	195, 419
BspCNI	CTCAG	4 cut(s)	133, 178, 195, 942
BspLI	GGNNCC	3 cut(s)	236, 386, 419
BspPI	GGATC	2 cut(s)	138, 804
BsrDI	GCAATG	2 cut(s)	777, 974
BsrI	ACTGG	2 cut(s)	518, 530
BssECI	CCNNGG	4 cut(s)	421, 450, 487, 928
BssMI	GATC	6 cut(s)	143, 199, 325, 643, 778, 796
BssT1I	CCWWGG	1 cut(s)	928
Bst2UI	CCWGG	2 cut(s)	192, 489
Bst4CI	ACNGT	1 cut(s)	462
BstDEI	CTNAG	7 cut(s)	120, 186, 203, 245, 477, 710, 950
BstDSI	CCRYGG	1 cut(s)	928
BstEII	GGTNACC	1 cut(s)	445
BstF5I	GGATG	2 cut(s)	460, 924
BstH2I	RGCGCY	2 cut(s)	140, 369
BstHHI	GCGC	2 cut(s)	139, 368
BstKTI	GATC	6 cut(s)	146, 202, 328, 646, 781, 799
BstMBI	GATC	6 cut(s)	143, 199, 325, 643, 778, 796
BstNI	CCWGG	2 cut(s)	192, 489
BstPI	GGTNACC	1 cut(s)	445
BstSCI	CCNGG	3 cut(s)	190, 449, 487
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	2 cut(s)	413, 779
BstV2I	GAAGAC	2 cut(s)	276, 339
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuI	GTATCC	1 cut(s)	869
BsuRI	GGCC	2 cut(s)	195, 419
BtgI	CCRYGG	1 cut(s)	928
BtsCI	GGATG	2 cut(s)	460, 924
CfoI	GCGC	2 cut(s)	139, 368
Cfr13I	GGNCC	3 cut(s)	385, 417, 418
Csp6I	GTAC	2 cut(s)	458, 474
CviAII	CATG	2 cut(s)	901, 929
CviQI	GTAC	2 cut(s)	458, 474
DdeI	CTNAG	7 cut(s)	120, 186, 203, 245, 477, 710, 950
DpnI	GATC	6 cut(s)	145, 201, 327, 645, 780, 798
DpnII	GATC	6 cut(s)	143, 199, 325, 643, 778, 796
DraI	TTTAAA	1 cut(s)	600
DraIII	CACNNNGTG	1 cut(s)	29
EciI	GGCGGA	3 cut(s)	279, 815, 851
Ecl136II	GAGCTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	928
Eco24I	GRGCYC	2 cut(s)	83, 421
Eco47I	GGWCC	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	76
Eco91I	GGTNACC	1 cut(s)	445
EcoICRI	GAGCTC	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	418
EcoO65I	GGTNACC	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	954
EcoRII	CCWGG	2 cut(s)	190, 487
EcoT14I	CCWWGG	1 cut(s)	928
EcoT38I	GRGCYC	2 cut(s)	83, 421
ErhI	CCWWGG	1 cut(s)	928
FaeI	CATG	2 cut(s)	904, 932
FaiI	YATR	8 cut(s)	21, 36, 40, 65, 495, 758, 902, 930
FatI	CATG	2 cut(s)	900, 928
FauI	CCCGC	1 cut(s)	316
FbaI	TGATCA	1 cut(s)	778
Fnu4HI	GCNGC	2 cut(s)	427, 768
FokI	GGATG	2 cut(s)	467, 911
FriOI	GRGCYC	2 cut(s)	83, 421
Fsp4HI	GCNGC	2 cut(s)	427, 768
FspBI	CTAG	3 cut(s)	354, 398, 997
GlaI	GCGC	2 cut(s)	138, 367
GluI	GCNGC	2 cut(s)	427, 768
GsuI	CTGGAG	1 cut(s)	390
HaeII	RGCGCY	2 cut(s)	140, 369
HaeIII	GGCC	2 cut(s)	195, 419
HapII	CCGG	1 cut(s)	450
HhaI	GCGC	2 cut(s)	139, 368
Hin1II	CATG	2 cut(s)	904, 932
Hin6I	GCGC	2 cut(s)	137, 366
HinP1I	GCGC	2 cut(s)	137, 366
HinfI	GANTC	5 cut(s)	74, 181, 240, 314, 481
HpaII	CCGG	1 cut(s)	450
HphI	GGTGA	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	6 cut(s)	180, 204, 239, 325, 888, 975
Hpy188III	TCNNGA	6 cut(s)	122, 147, 185, 329, 641, 736
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	1 cut(s)	737
HpyAV	CCTTC	3 cut(s)	493, 549, 876
HpyCH4III	ACNGT	1 cut(s)	462
HpyCH4IV	ACGT	2 cut(s)	732, 843
HpyCH4V	TGCA	7 cut(s)	34, 63, 429, 592, 637, 946, 967
HpyF3I	CTNAG	7 cut(s)	120, 186, 203, 245, 477, 710, 950
HpySE526I	ACGT	2 cut(s)	732, 843
Hsp92II	CATG	2 cut(s)	904, 932
HspAI	GCGC	2 cut(s)	137, 366
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	6 cut(s)	143, 199, 325, 643, 778, 796
LmnI	GCTCC	5 cut(s)	86, 240, 254, 304, 941
Lsp1109I	GCAGC	2 cut(s)	413, 779
LweI	GCATC	3 cut(s)	438, 562, 646
MaeI	CTAG	3 cut(s)	354, 398, 997
MaeII	ACGT	2 cut(s)	732, 843
MaeIII	GTNAC	3 cut(s)	169, 445, 532
MalI	GATC	6 cut(s)	145, 201, 327, 645, 780, 798
MboI	GATC	6 cut(s)	143, 199, 325, 643, 778, 796
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	2 cut(s)	83, 421
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	448
MseI	TTAA	3 cut(s)	228, 599, 663
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	1 cut(s)	450
MspR9I	CCNGG	3 cut(s)	192, 451, 489
MvaI	CCWGG	2 cut(s)	192, 489
NciI	CCSGG	1 cut(s)	451
NcoI	CCATGG	1 cut(s)	928
NdeII	GATC	6 cut(s)	143, 199, 325, 643, 778, 796
NlaIII	CATG	2 cut(s)	904, 932
NlaIV	GGNNCC	3 cut(s)	236, 386, 419
NmeAIII	GCCGAG	2 cut(s)	165, 402
OliI	CACNNNNGTG	1 cut(s)	56
PaeR7I	CTCGAG	1 cut(s)	76
PfeI	GAWTC	4 cut(s)	181, 240, 314, 481
PflFI	GACNNNGTC	1 cut(s)	731
PkrI	GCNGC	2 cut(s)	428, 769
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	190, 487
PspEI	GGTNACC	1 cut(s)	445
PspGI	CCWGG	2 cut(s)	190, 487
PspN4I	GGNNCC	3 cut(s)	236, 386, 419
PspOMI	GGGCCC	1 cut(s)	417
PspPI	GGNCC	3 cut(s)	385, 417, 418
PspXI	VCTCGAGB	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	143
PsyI	GACNNNGTC	1 cut(s)	731
RsaI	GTAC	2 cut(s)	459, 475
RsaNI	GTAC	2 cut(s)	458, 474
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	228, 599, 663
SatI	GCNGC	2 cut(s)	427, 768
Sau3AI	GATC	6 cut(s)	143, 199, 325, 643, 778, 796
Sau96I	GGNCC	3 cut(s)	385, 417, 418
ScaI	AGTACT	1 cut(s)	475
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	3 cut(s)	192, 451, 489
SduI	GDGCHC	2 cut(s)	83, 421
SfaNI	GCATC	3 cut(s)	438, 562, 646
Sfr274I	CTCGAG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	385
SlaI	CTCGAG	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	76, 722
SmoI	CTYRAG	2 cut(s)	76, 722
SsiI	CCGC	5 cut(s)	290, 309, 407, 826, 862
SspMI	CTAG	3 cut(s)	354, 398, 997
SstI	GAGCTC	1 cut(s)	83
StyD4I	CCNGG	3 cut(s)	190, 449, 487
StyI	CCWWGG	1 cut(s)	928
TaaI	ACNGT	1 cut(s)	462
TaiI	ACGT	2 cut(s)	735, 846
TaqI	TCGA	3 cut(s)	77, 198, 799
TatI	WGTACW	2 cut(s)	457, 473
TfiI	GAWTC	4 cut(s)	181, 240, 314, 481
Tru1I	TTAA	3 cut(s)	228, 599, 663
Tru9I	TTAA	3 cut(s)	228, 599, 663
TseI	GCWGC	2 cut(s)	426, 767
TspDTI	ATGAA	2 cut(s)	825, 858
TspGWI	ACGGA	2 cut(s)	82, 928
Tth111I	GACNNNGTC	1 cut(s)	731
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	6 cut(s)	224, 357, 521, 594, 784, 954
XhoI	CTCGAG	1 cut(s)	76
XspI	CTAG	3 cut(s)	354, 398, 997
ZrmI	AGTACT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.