Rh7CG489800

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018608
Physical Location & Seq
Reverse (-)
65834426 .. 65837899
3474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG489800.1

Sequence Viewer

Length: 978 bp
ATGTTCTATTTGGTGGTTGTTTCTGCGTTTATTATCTGTTTCTTGATAATTGTATATTCAATTTTCTACATTGGTCTCTCGTCAGGTTTTCGCACGATTTACACCTCTACAATGTGGCTGGATTCTTGGACTAAGAATGAGATGGACCTGGGTTTCTTGGTATATAAATATGCAGTGCGCCTTGGCTTGTCTTCAAAGAGCTTTTGTGACCTTATCACTGATATGGGTTCTCATGGGTGTACAGAATGCAGCACAACTGAATCATCTGACGATATTGAGAAACAGGAGCTCGAGGAAGTGTCAGATGAAGATGAATTGTCATTTTTTGACACAAAAGAGTATTTTACTGAACCAAACATAAGTTGCGGGTCTGTGCAAGTTGTAAATAACACAAATAATATCAACAAACCTCGAAGTCAATTTAGTAATGTTGAGGAGATGCACACAGAAAAGGAAATTAATGATGTTAGATATTCACACATTGAAAGGAGAAAAGAGCTTCCTATTCCAGTTGAGAAGGAGAAAGGAGTCAGCCTTTGGTCCATGATTAAAGACAATGTGGGAAAGGATCTCACTCGAGTTTGTCTCCCTGTGTATTTTAATGAGCCAATATCATCTCTTCAGAAGTGTTGTGAGGACATGGAGTACTCGTATCTTTTGGATCGGGCATATGAGTATGGAAAAATGGGGAATAGTCTCCAAAGGATTCTAAATGTTGCTGCATTTGCGGTTTCTGGTTATGCATCATCGGAAGGGCGGCACTGTAAGCCATTCAATCCTTTGTTAGGTGAAACTTATGAAGCCGACTATCCAGATAAAGGAATTCGCTTCTTCTCTGAAAAGGAACATACTTGGGTGATGGAGTCCGGAGAATATCTTACTTTTCCTCAAAACCAGTCTGAGATAAAGGGTGGGGTTCTTCACTATCTTGAGTCCATTGAAGAGGCGAGTTTCCTCATCATGTCAATTGAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

325

Amino Acids

37.32

Weight (kDa)

4.67

Isoelectric Point (pI)

54.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxysterol_BP PF01237 178 - 281 6e-41 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 866
AciI CCGC 3 cut(s) 366, 728, 757
AclWI GGATC 2 cut(s) 576, 669
AcsI RAATTY 1 cut(s) 822
AcuI CTGAAG 1 cut(s) 605
AfaI GTAC 2 cut(s) 241, 647
AfiI CCNNNNNNNGG 2 cut(s) 785, 818
AgsI TTSAA 6 cut(s) 60, 195, 485, 775, 941, 971
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 3 cut(s) 201, 289, 499
AluI AGCT 3 cut(s) 201, 289, 499
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 3 cut(s) 80, 590, 701
AlwI GGATC 2 cut(s) 576, 669
Ama87I CYCGRG 2 cut(s) 290, 576
Aor13HI TCCGGA 1 cut(s) 866
ApeKI GCWGC 2 cut(s) 249, 719
ApoI RAATTY 1 cut(s) 822
AseI ATTAAT 1 cut(s) 459
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 145, 540
AsuHPI GGTGA 2 cut(s) 800, 868
AvaI CYCGRG 2 cut(s) 290, 576
AvaII GGWCC 2 cut(s) 145, 540
BanII GRGCYC 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 261, 706
BccI CCATC 2 cut(s) 136, 853
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 3 cut(s) 80, 590, 701
BisI GCNGC 3 cut(s) 250, 720, 758
BlsI GCNGC 3 cut(s) 251, 721, 759
BmcAI AGTACT 1 cut(s) 647
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 2 cut(s) 145, 540
BmeT110I CYCGRG 2 cut(s) 290, 576
BmgT120I GGNCC 2 cut(s) 145, 540
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 2 cut(s) 429, 752
BpiI GAAGAC 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 570, 602
BpuEI CTTGAG 1 cut(s) 950
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 148, 181
BsaWI WCCGGW 1 cut(s) 866
BsaXI ACNNNNNCTCC 2 cut(s) 635, 665
Bsc4I CCNNNNNNNGG 2 cut(s) 785, 818
Bse1I ACTGG 2 cut(s) 509, 895
BseAI TCCGGA 1 cut(s) 866
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 148, 181
BseLI CCNNNNNNNGG 2 cut(s) 785, 818
BseMII CTCAG 1 cut(s) 891
BseNI ACTGG 2 cut(s) 509, 895
BseRI GAGGAG 1 cut(s) 449
BseXI GCAGC 2 cut(s) 261, 706
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 2 cut(s) 290, 576
BsiSI CCGG 1 cut(s) 867
BslI CCNNNNNNNGG 2 cut(s) 785, 818
BsmAI GTCTC 3 cut(s) 80, 590, 701
BsmI GAATGC 1 cut(s) 251
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 2 cut(s) 290, 576
Bsp1286I GDGCHC 1 cut(s) 291
Bsp13I TCCGGA 1 cut(s) 866
Bsp1407I TGTACA 1 cut(s) 239
Bsp143I GATC 2 cut(s) 568, 661
BspACI CCGC 3 cut(s) 366, 728, 757
BspCNI CTCAG 1 cut(s) 892
BspEI TCCGGA 1 cut(s) 866
BspPI GGATC 2 cut(s) 576, 669
BspTNI GGTCTC 1 cut(s) 80
BsrGI TGTACA 1 cut(s) 239
BsrI ACTGG 2 cut(s) 509, 895
BssECI CCNNGG 2 cut(s) 148, 181
BssMI GATC 2 cut(s) 568, 661
BssT1I CCWWGG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 764
Bst6I CTCTTC 2 cut(s) 624, 936
BstAUI TGTACA 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 132, 900
BstENI CCTNNNNNAGG 1 cut(s) 783
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 571, 664
BstMAI GTCTC 3 cut(s) 80, 590, 701
BstMBI GATC 2 cut(s) 568, 661
BstMWI GCNNNNNNNGC 2 cut(s) 725, 766
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 261, 706
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 3 cut(s) 180, 216, 760
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 145, 540
Csp6I GTAC 2 cut(s) 240, 646
CviAII CATG 4 cut(s) 233, 544, 640, 961
CviJI RGCY 9 cut(s) 118, 186, 201, 289, 499, 534, 607, 769, 803
CviKI_1 RGCY 9 cut(s) 118, 186, 201, 289, 499, 534, 607, 769, 803
CviQI GTAC 2 cut(s) 240, 646
DdeI CTNAG 2 cut(s) 132, 900
DpnI GATC 2 cut(s) 570, 663
DpnII GATC 2 cut(s) 568, 661
Eam1104I CTCTTC 2 cut(s) 624, 936
EarI CTCTTC 2 cut(s) 624, 936
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 2 cut(s) 145, 540
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 605
Eco88I CYCGRG 2 cut(s) 290, 576
EcoICRI GAGCTC 1 cut(s) 289
EcoNI CCTNNNNNAGG 1 cut(s) 783
EcoRI GAATTC 1 cut(s) 822
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 181
EcoT22I ATGCAT 1 cut(s) 745
EcoT38I GRGCYC 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 4 cut(s) 236, 547, 643, 964
FatI CATG 4 cut(s) 232, 543, 639, 960
FauI CCCGC 1 cut(s) 359
FauNDI CATATG 1 cut(s) 670
Fnu4HI GCNGC 3 cut(s) 250, 720, 758
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 3 cut(s) 250, 720, 758
GlaI GCGC 1 cut(s) 179
GluI GCNGC 3 cut(s) 250, 720, 758
HapII CCGG 1 cut(s) 867
HhaI GCGC 1 cut(s) 180
Hin1II CATG 4 cut(s) 236, 547, 643, 964
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 6 cut(s) 122, 260, 528, 706, 863, 932
HpaII CCGG 1 cut(s) 867
HphI GGTGA 2 cut(s) 800, 868
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 6 cut(s) 268, 304, 624, 751, 838, 901
Hpy188III TCNNGA 4 cut(s) 43, 812, 867, 929
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 2 cut(s) 511, 746
HpyCH4III ACNGT 1 cut(s) 764
HpyCH4V TGCA 6 cut(s) 173, 249, 376, 442, 722, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 725, 766
HpyF3I CTNAG 2 cut(s) 132, 900
Hsp92II CATG 4 cut(s) 236, 547, 643, 964
HspAI GCGC 1 cut(s) 178
Kpn2I TCCGGA 1 cut(s) 866
Kzo9I GATC 2 cut(s) 568, 661
LmnI GCTCC 1 cut(s) 286
Lsp1109I GCAGC 2 cut(s) 261, 706
LweI GCATC 2 cut(s) 429, 752
MaeIII GTNAC 1 cut(s) 206
MalI GATC 2 cut(s) 570, 663
MboI GATC 2 cut(s) 568, 661
MboII GAAGA 6 cut(s) 183, 320, 611, 823, 911, 953
MfeI CAATTG 1 cut(s) 966
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 7 cut(s) 48, 60, 314, 419, 456, 822, 966
MlyI GAGTC 3 cut(s) 537, 872, 941
MnlI CCTC 8 cut(s) 115, 286, 420, 427, 628, 897, 937, 965
Mph1103I ATGCAT 1 cut(s) 745
MroI TCCGGA 1 cut(s) 866
MseI TTAA 3 cut(s) 459, 549, 600
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 1 cut(s) 867
MspR9I CCNGG 1 cut(s) 149
MunI CAATTG 1 cut(s) 966
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 725, 766
NdeI CATATG 1 cut(s) 670
NdeII GATC 2 cut(s) 568, 661
NlaIII CATG 4 cut(s) 236, 547, 643, 964
NmuCI GTSAC 1 cut(s) 206
NsiI ATGCAT 1 cut(s) 745
PaeR7I CTCGAG 2 cut(s) 290, 576
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 3 cut(s) 122, 260, 706
PkrI GCNGC 3 cut(s) 251, 721, 759
PleI GAGTC 3 cut(s) 536, 871, 940
PpsI GAGTC 3 cut(s) 536, 871, 940
PshBI ATTAAT 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspPI GGNCC 2 cut(s) 145, 540
PspXI VCTCGAGB 2 cut(s) 290, 576
PsuI RGATCY 1 cut(s) 568
RsaI GTAC 2 cut(s) 241, 647
RsaNI GTAC 2 cut(s) 240, 646
RseI CAYNNNNRTG 1 cut(s) 221
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 3 cut(s) 459, 549, 600
SatI GCNGC 3 cut(s) 250, 720, 758
Sau3AI GATC 2 cut(s) 568, 661
Sau96I GGNCC 2 cut(s) 145, 540
ScaI AGTACT 1 cut(s) 647
SchI GAGTC 3 cut(s) 537, 872, 941
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 291
SetI ASST 9 cut(s) 88, 107, 150, 203, 213, 291, 412, 501, 790
SfaNI GCATC 2 cut(s) 429, 752
Sfr274I CTCGAG 2 cut(s) 290, 576
SinI GGWCC 2 cut(s) 145, 540
SlaI CTCGAG 2 cut(s) 290, 576
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 3 cut(s) 290, 576, 929
SmoI CTYRAG 3 cut(s) 290, 576, 929
Sse9I AATT 7 cut(s) 48, 60, 314, 419, 456, 822, 966
SsiI CCGC 3 cut(s) 366, 728, 757
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 764
TaqI TCGA 3 cut(s) 291, 412, 577
TasI AATT 7 cut(s) 48, 60, 314, 419, 456, 822, 966
TatI WGTACW 2 cut(s) 239, 645
TauI GCSGC 1 cut(s) 760
TfiI GAWTC 3 cut(s) 122, 260, 706
Tru1I TTAA 3 cut(s) 459, 549, 600
Tru9I TTAA 3 cut(s) 459, 549, 600
TscAI CASTG 3 cut(s) 180, 223, 767
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 2 cut(s) 249, 719
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 321, 327, 813
TspRI CASTG 3 cut(s) 180, 223, 767
VpaK11BI GGWCC 2 cut(s) 145, 540
VspI ATTAAT 1 cut(s) 459
XagI CCTNNNNNAGG 1 cut(s) 783
XapI RAATTY 1 cut(s) 822
XhoI CTCGAG 2 cut(s) 290, 576
ZrmI AGTACT 1 cut(s) 647
Zsp2I ATGCAT 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.