Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0018608

Physical Location & Seq

Genomic Coordinates Forward (+)

61818579 .. 61846724

Gene Structure 28146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG436200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGATCAGTCAGTCTTTCGCTTTCTTTTACGAGTTTTTGTGCCGGACATGGTCACTCTCTGTTACCAGTTGCTGGAGATTTTGCTTGGATCCACAGATTACTAGACTTGGCGGACATTTGGACCCTCGGCTGTATCTTCGGTTTGTCCGGCTCATCTCCAGGAGCAGATGAAATTTCAAAATCTGTGGTAACAACTGCTGAGGACACTCCTGCAAAGAAGGTGGCGCCATCACATATTTGGAAATCAAGAAGCCTCCACTCACCCACCACCTACTGTTTCATGATCTCAGCCTCATCGATCCCAATCAATCTCCATCAAAACTTGGTGGTGCTTTTCTGCTTCATGTCCATTCCAAAGGTAATTTTGGGGTGGTTTCATTGTTTGGCTCGGCCAGCGACTTTAGCAAATATACCGAAGGGTATTTATTACGAAGTTTTGTCTAGCGATTCTCATCCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

154

Amino Acids

16.6

Weight (kDa)

7.07

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018608)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0014731 RchiOBHm_Chr5g0079721 RchiOBHm_Chr6g0258861 RchiOBHm_Chr6g0258871
rosa_roxburghii	Rroxscaffold_4G00301120
rosa_rugosa	Rorug04G0188000 Rorug05G0418900
rosa_samantha	Rh1BG260300 Rh2BG436200 Rh7CG489800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	226
AccB7I	CCANNNNNTGG	1 cut(s)	74
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	4 cut(s)	13, 85, 98, 295
AcoI	YGGCCR	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	160
AlwI	GGATC	4 cut(s)	13, 85, 98, 295
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	123
BamHI	GGATCC	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	201
BccI	CCATC	2 cut(s)	238, 324
BciT130I	CCWGG	1 cut(s)	162
BfaI	CTAG	2 cut(s)	104, 444
BfoI	RGCGCY	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	3 cut(s)	92, 125, 228
BmrFI	CCNGG	1 cut(s)	162
BpmI	CTGGAG	2 cut(s)	96, 144
Bpu10I	CCTNAGC	1 cut(s)	201
Bsa29I	ATCGAT	1 cut(s)	299
BsaBI	GATNNNNATC	2 cut(s)	305, 453
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	68
Bse8I	GATNNNNATC	2 cut(s)	305, 453
BseBI	CCWGG	1 cut(s)	162
BseCI	ATCGAT	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	454
BseJI	GATNNNNATC	2 cut(s)	305, 453
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	192, 303
BseNI	ACTGG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	394
BshNI	GGYRCC	1 cut(s)	226
BshVI	ATCGAT	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	45, 150
BslI	CCNNNNNNNGG	1 cut(s)	74
BsnI	GGCC	1 cut(s)	394
Bsp143I	GATC	4 cut(s)	5, 90, 285, 300
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	1 cut(s)	394
BspCNI	CTCAG	2 cut(s)	193, 302
BspDI	ATCGAT	1 cut(s)	299
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	92, 125, 228
BspPI	GGATC	4 cut(s)	13, 85, 98, 295
BspT107I	GGYRCC	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	4 cut(s)	5, 90, 285, 300
BssNI	GRCGYC	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	2 cut(s)	201, 289
BstF5I	GGATG	1 cut(s)	454
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	4 cut(s)	8, 93, 288, 303
BstMBI	GATC	4 cut(s)	5, 90, 285, 300
BstMWI	GCNNNNNNNGC	2 cut(s)	395, 404
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	394
BsuTUI	ATCGAT	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	396
CaiI	CAGNNNCTG	1 cut(s)	74
CciI	TCATGA	1 cut(s)	282
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	123
ClaI	ATCGAT	1 cut(s)	299
CspCI	CAANNNNNGTGG	4 cut(s)	168, 203, 204, 239
CviAII	CATG	3 cut(s)	50, 283, 346
CviJI	RGCY	6 cut(s)	132, 153, 255, 293, 389, 394
CviKI_1	RGCY	6 cut(s)	132, 153, 255, 293, 389, 394
DdeI	CTNAG	2 cut(s)	201, 289
DinI	GGCGCC	1 cut(s)	228
DpnI	GATC	4 cut(s)	7, 92, 287, 302
DpnII	GATC	4 cut(s)	5, 90, 285, 300
EaeI	YGGCCR	1 cut(s)	392
EciI	GGCGGA	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	160
EgeI	GGCGCC	1 cut(s)	228
EheI	GGCGCC	1 cut(s)	228
FaeI	CATG	3 cut(s)	53, 286, 349
FaiI	YATR	5 cut(s)	51, 237, 284, 347, 413
FatI	CATG	3 cut(s)	49, 282, 345
FokI	GGATG	1 cut(s)	441
FspBI	CTAG	2 cut(s)	104, 444
GlaI	GCGC	1 cut(s)	228
GsuI	CTGGAG	2 cut(s)	96, 144
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	394
HapII	CCGG	2 cut(s)	45, 150
HhaI	GCGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	3 cut(s)	53, 286, 349
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	2 cut(s)	45, 150
HphI	GGTGA	1 cut(s)	255
Hpy188III	TCNNGA	3 cut(s)	249, 283, 462
HpyAV	CCTTC	2 cut(s)	214, 412
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	395, 404
HpyF3I	CTNAG	2 cut(s)	201, 289
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	3 cut(s)	53, 286, 349
HspAI	GCGC	1 cut(s)	227
KasI	GGCGCC	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	5, 90, 285, 300
LmnI	GCTCC	1 cut(s)	164
LpnPI	CCDG	8 cut(s)	58, 60, 81, 147, 163, 174, 225, 408
MaeI	CTAG	2 cut(s)	104, 444
MaeIII	GTNAC	3 cut(s)	53, 63, 190
MalI	GATC	4 cut(s)	7, 92, 287, 302
MboI	GATC	4 cut(s)	5, 90, 285, 300
MboII	GAAGA	1 cut(s)	130
MflI	RGATCY	1 cut(s)	90
MluCI	AATT	2 cut(s)	174, 363
Mly113I	GGCGCC	1 cut(s)	227
MnlI	CCTC	4 cut(s)	137, 196, 266, 304
MspI	CCGG	2 cut(s)	45, 150
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	395, 404
NarI	GGCGCC	1 cut(s)	227
NdeII	GATC	4 cut(s)	5, 90, 285, 300
NlaIII	CATG	3 cut(s)	53, 286, 349
NlaIV	GGNNCC	3 cut(s)	92, 125, 228
NmeAIII	GCCGAG	2 cut(s)	108, 370
NmuCI	GTSAC	1 cut(s)	53
PagI	TCATGA	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	449
PflFI	GACNNNGTC	1 cut(s)	51
PflMI	CCANNNNNTGG	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	160
PluTI	GGCGCC	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	92, 125, 228
PspPI	GGNCC	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	90
PsyI	GACNNNGTC	1 cut(s)	51
Sau3AI	GATC	4 cut(s)	5, 90, 285, 300
Sau96I	GGNCC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	3 cut(s)	225, 275, 363
SfoI	GGCGCC	1 cut(s)	228
SinI	GGWCC	1 cut(s)	123
Sse9I	AATT	2 cut(s)	174, 363
SsiI	CCGC	1 cut(s)	113
SspDI	GGCGCC	1 cut(s)	226
SspMI	CTAG	2 cut(s)	104, 444
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	299
TasI	AATT	2 cut(s)	174, 363
TfiI	GAWTC	1 cut(s)	449
TseFI	GTSAC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	4 cut(s)	186, 271, 334, 368
Tth111I	GACNNNGTC	1 cut(s)	51
Van91I	CCANNNNNTGG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	1 cut(s)	174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	237
XspI	CTAG	2 cut(s)	104, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.