RchiOBHm_Chr6g0258871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0018608
Physical Location & Seq
Reverse (-)
14213910 .. 14215782
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23212

Sequence Viewer

Length: 237 bp
ATGGGATCAGTCAGTTTTTTGCTTTCTTTTGCGAGTTTTTATGCCGGAGACGGTCACTCTCTGTTACCAGGCGCTGGAGATTTTGCTTGGGTCCACAGATTACTCAACTTGGCGGACATTTGGGCCCTCGGCTGCATCTTCGGTTGTGTGAAGGTGGAGAACTACTGGATAAAATTTTCTCCAGGGGTGGAAGATACACAGAAGAAGATGCTAAAGTTATTGTTGTGCAAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.67

Weight (kDa)

7.73

Isoelectric Point (pI)

15.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 74
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 13
AcsI RAATTY 2 cut(s) 173, 230
AfiI CCNNNNNNNGG 1 cut(s) 74
AjnI CCWGG 2 cut(s) 67, 181
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 74
AoxI GGCC 1 cut(s) 123
ApaI GGGCCC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 2 cut(s) 173, 230
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 3 cut(s) 91, 123, 124
AvaII GGWCC 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 119
BciT130I CCWGG 2 cut(s) 69, 183
BcoDI GTCTC 1 cut(s) 42
BfoI RGCGCY 1 cut(s) 75
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
Bme1390I CCNGG 2 cut(s) 69, 183
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 3 cut(s) 91, 123, 124
BmiI GGNNCC 2 cut(s) 92, 125
BmrFI CCNGG 2 cut(s) 69, 183
BmsI GCATC 2 cut(s) 144, 198
BpmI CTGGAG 2 cut(s) 96, 165
BsaJI CCNNGG 2 cut(s) 127, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 2 cut(s) 69, 183
BseDI CCNNGG 2 cut(s) 127, 182
BseLI CCNNNNNNNGG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 1 cut(s) 119
BshFI GGCC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 42
BsmBI CGTCTC 1 cut(s) 42
BsnI GGCC 1 cut(s) 125
Bsp120I GGGCCC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 1 cut(s) 5
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 125
BspLI GGNNCC 2 cut(s) 92, 125
BspPI GGATC 1 cut(s) 13
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 127, 182
BssMI GATC 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 69, 183
Bst4CI ACNGT 1 cut(s) 53
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 1 cut(s) 8
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 1 cut(s) 5
BstNI CCWGG 2 cut(s) 69, 183
BstSCI CCNGG 2 cut(s) 67, 181
BstSLI GKGCMC 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 119
BsuRI GGCC 1 cut(s) 125
CaiI CAGNNNCTG 1 cut(s) 74
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 3 cut(s) 91, 123, 124
CviJI RGCY 2 cut(s) 125, 132
CviKI_1 RGCY 2 cut(s) 125, 132
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
EciI GGCGGA 1 cut(s) 128
Eco24I GRGCYC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 2 cut(s) 67, 181
EcoT38I GRGCYC 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 42
FaiI YATR 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 133
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 133
GlaI GCGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 133
GsuI CTGGAG 2 cut(s) 96, 165
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 1 cut(s) 125
HapII CCGG 1 cut(s) 45
HhaI GCGC 1 cut(s) 74
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 135, 228
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 1 cut(s) 5
LpnPI CCDG 7 cut(s) 54, 58, 60, 81, 151, 168, 195
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 2 cut(s) 144, 198
MaeIII GTNAC 2 cut(s) 53, 63
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MboII GAAGA 4 cut(s) 130, 203, 214, 217
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 2 cut(s) 173, 230
MnlI CCTC 1 cut(s) 137
MseI TTAA 1 cut(s) 235
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 2 cut(s) 69, 183
MvaI CCWGG 2 cut(s) 69, 183
NdeII GATC 1 cut(s) 5
NlaIV GGNNCC 2 cut(s) 92, 125
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 67, 181
PspGI CCWGG 2 cut(s) 67, 181
PspN4I GGNNCC 2 cut(s) 92, 125
PspOMI GGGCCC 1 cut(s) 123
PspPI GGNCC 3 cut(s) 91, 123, 124
PstNI CAGNNNCTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 235
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 1 cut(s) 5
Sau96I GGNCC 3 cut(s) 91, 123, 124
ScrFI CCNGG 2 cut(s) 69, 183
SduI GDGCHC 1 cut(s) 127
SetI ASST 1 cut(s) 156
SfaNI GCATC 2 cut(s) 144, 198
SinI GGWCC 1 cut(s) 91
Sse9I AATT 2 cut(s) 173, 230
SsiI CCGC 1 cut(s) 113
StyD4I CCNGG 2 cut(s) 67, 181
TaaI ACNGT 1 cut(s) 53
TasI AATT 2 cut(s) 173, 230
Tru1I TTAA 1 cut(s) 235
Tru9I TTAA 1 cut(s) 235
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 53
Van91I CCANNNNNTGG 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 2 cut(s) 173, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.