Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019019

Physical Location & Seq

Genomic Coordinates Reverse (-)

36928145 .. 36930838

Gene Structure 2694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32050

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTTCCACAGTTTGCTGTCTCCTCCAGCTCATCCTGTTTGGAAGTGCAATGGAAGGATTGCAACAACAATGACAAGTTTTCGGGAGCACACCCAAAGATATTTGGAACTTAACTCAGATAAAGACGATTTACCTTGGCTCCAACTATTTGACAGGTACACCATACCGAATGAGATTGGTCATCTTCCATGTTTAGAGGAATTTGTCCTGGGTGGTAATAATCTCAGTGGCCTCATCCCAACCTCAATCTTCCATATGTCCGCAATATCAATAATATCACTTGACAGCAACCAGTTCTCAGACTCTAGGGAGAAATTCCAACAGGCGGGCCTTTCAAAAACTTCTCTGGTGAATCATTTCTTTCTAACCATTTGTGGTGCATCCCTATTTCAAGTTTCAGCATGTAGAAGGAAAACTGGTATATCTATCTTCAAGTATGTTATTCCGGGGATCTTGTCATCACTGCTTCTAGTGACCTCCATATTGATCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

164

Amino Acids

18.39

Weight (kDa)

7.74

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019019)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0042091 RchiOBHm_Chr5g0042131 RchiOBHm_Chr5g0042141
rosa_multiflora	Rmu_co8371599.1_g000001 Rmu_sc0005255.1_g000022 Rmu_sc0026312.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065110
rosa_rugosa	Rorug05G0198100
rosa_samantha	Rh5BG265700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	261, 326
AclWI	GGATC	1 cut(s)	458
AcsI	RAATTY	2 cut(s)	200, 314
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	3 cut(s)	336, 392, 433
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	458
AoxI	GGCC	2 cut(s)	229, 328
ApoI	RAATTY	2 cut(s)	200, 314
Asp700I	GAANNNNTTC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	328
AsuC2I	CCSGG	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	2 cut(s)	306, 470
Bme1390I	CCNGG	2 cut(s)	209, 447
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	2 cut(s)	209, 447
BmsI	GCATC	1 cut(s)	389
BpmI	CTGGAG	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	447
BsaJI	CCNNGG	3 cut(s)	134, 208, 446
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse1I	ACTGG	2 cut(s)	292, 421
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	3 cut(s)	134, 208, 446
BseGI	GGATG	3 cut(s)	31, 234, 380
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	3 cut(s)	129, 238, 312
BseNI	ACTGG	2 cut(s)	292, 421
BseRI	GAGGAG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	231, 330
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	231, 330
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	450, 486
BspACI	CCGC	2 cut(s)	261, 326
BspANI	GGCC	2 cut(s)	231, 330
BspCNI	CTCAG	3 cut(s)	128, 237, 311
BspLI	GGNNCC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	292, 421
BssECI	CCNNGG	3 cut(s)	134, 208, 446
BssMI	GATC	2 cut(s)	450, 486
BssT1I	CCWWGG	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	3 cut(s)	115, 224, 298
BstF5I	GGATG	3 cut(s)	31, 234, 380
BstKTI	GATC	2 cut(s)	453, 489
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	450, 486
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	405
BstSCI	CCNGG	2 cut(s)	207, 445
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	231, 330
BtsCI	GGATG	3 cut(s)	31, 234, 380
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	2 cut(s)	232, 461
Cac8I	GCNNGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	328
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	189, 402
CviJI	RGCY	4 cut(s)	29, 139, 231, 330
CviKI_1	RGCY	4 cut(s)	29, 139, 231, 330
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	3 cut(s)	115, 224, 298
DpnI	GATC	2 cut(s)	452, 488
DpnII	GATC	2 cut(s)	450, 486
Eco130I	CCWWGG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	2 cut(s)	192, 405
FaiI	YATR	9 cut(s)	164, 190, 255, 257, 403, 422, 438, 482, 493
FatI	CATG	2 cut(s)	188, 401
FauI	CCCGC	1 cut(s)	319
FauNDI	CATATG	1 cut(s)	255
FokI	GGATG	3 cut(s)	18, 221, 367
FspBI	CTAG	2 cut(s)	306, 470
GsuI	CTGGAG	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	231, 330
HapII	CCGG	1 cut(s)	446
Hin1II	CATG	2 cut(s)	192, 405
HinfI	GANTC	2 cut(s)	302, 352
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	2 cut(s)	118, 301
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	2 cut(s)	48, 402
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	3 cut(s)	48, 62, 380
HpyF3I	CTNAG	3 cut(s)	115, 224, 298
Hsp92II	CATG	2 cut(s)	192, 405
Kzo9I	GATC	2 cut(s)	450, 486
LmnI	GCTCC	2 cut(s)	85, 144
LweI	GCATC	1 cut(s)	389
MaeI	CTAG	2 cut(s)	306, 470
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	2 cut(s)	452, 488
MboI	GATC	2 cut(s)	450, 486
MboII	GAAGA	3 cut(s)	176, 241, 421
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	2 cut(s)	200, 314
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	2 cut(s)	166, 343
MnlI	CCTC	5 cut(s)	33, 190, 242, 253, 487
MroXI	GAANNNNTTC	1 cut(s)	356
MseI	TTAA	1 cut(s)	111
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	2 cut(s)	209, 447
MvaI	CCWGG	1 cut(s)	209
NciI	CCSGG	1 cut(s)	447
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	2 cut(s)	450, 486
NlaIII	CATG	2 cut(s)	192, 405
NlaIV	GGNNCC	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	472
NspI	RCATGY	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	352
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	450
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	450, 486
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	2 cut(s)	209, 447
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	5 cut(s)	31, 136, 158, 245, 479
SfaNI	GCATC	1 cut(s)	389
Sse9I	AATT	2 cut(s)	200, 314
SsiI	CCGC	2 cut(s)	261, 326
SspMI	CTAG	2 cut(s)	306, 470
StyD4I	CCNGG	2 cut(s)	207, 445
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	11
TasI	AATT	2 cut(s)	200, 314
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	2 cut(s)	232, 468
TseFI	GTSAC	1 cut(s)	472
Tsp45I	GTSAC	1 cut(s)	472
TspRI	CASTG	2 cut(s)	232, 468
XapI	RAATTY	2 cut(s)	200, 314
XceI	RCATGY	1 cut(s)	405
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	2 cut(s)	306, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.