Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8371599.1

Orthogroup ID

OG0019019

Physical Location & Seq

Genomic Coordinates Reverse (-)

103 .. 438

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8371599.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgctgcaaccaccactcaaaaaattagctcatgatggcatggttggagcattaccaatgaactccatgcaagttgacatgcaaggggcagcaggcggattttccgcatccgttgggagcttgaatgttggtgtatcatcgatgtcccaccagttaccaaaggaacaaatgtcaggaagggatgtcagtggccaaatggtaaaggggtctactggtgttgctcaggcatggaaagaagagaccgatgttgggcatgtagtcgcatctttgtttgaacattttggtgaaagtgtactcccctttactcccaaatcagagttatcttttttcttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

111

Amino Acids

11.71

Weight (kDa)

5.7

Isoelectric Point (pI)

27.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019019)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0042091 RchiOBHm_Chr5g0042131 RchiOBHm_Chr5g0042141
rosa_multiflora	Rmu_co8371599.1_g000001 Rmu_sc0005255.1_g000022 Rmu_sc0026312.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065110
rosa_rugosa	Rorug05G0198100
rosa_samantha	Rh5BG265700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	209
AciI	CCGC	2 cut(s)	96, 105
AcoI	YGGCCR	1 cut(s)	190
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	2 cut(s)	124, 275
AluBI	AGCT	2 cut(s)	29, 120
AluI	AGCT	2 cut(s)	29, 120
Alw26I	GTCTC	1 cut(s)	233
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	4, 89
AsuHPI	GGTGA	1 cut(s)	296
BalI	TGGCCA	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	233
BisI	GCNGC	2 cut(s)	5, 90
BlsI	GCNGC	2 cut(s)	6, 91
BmsI	GCATC	2 cut(s)	116, 272
Bpu10I	CCTNAGC	1 cut(s)	222
Bsa29I	ATCGAT	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse1I	ACTGG	2 cut(s)	151, 217
BseCI	ATCGAT	1 cut(s)	140
BseGI	GGATG	2 cut(s)	107, 187
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	2 cut(s)	151, 217
BseXI	GCAGC	1 cut(s)	101
BshFI	GGCC	1 cut(s)	192
BshVI	ATCGAT	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	192
Bso31I	GGTCTC	1 cut(s)	233
BspACI	CCGC	2 cut(s)	96, 105
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	235
BspDI	ATCGAT	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	151, 217
Bst6I	CTCTTC	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	107, 187
BstMAI	GTCTC	1 cut(s)	233
BstNSI	RCATGY	2 cut(s)	82, 257
BstV1I	GCAGC	1 cut(s)	101
Bsu15I	ATCGAT	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	192
BsuTUI	ATCGAT	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	107, 187
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	94
CciI	TCATGA	1 cut(s)	31
ClaI	ATCGAT	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	6 cut(s)	32, 40, 67, 79, 228, 254
CviJI	RGCY	3 cut(s)	29, 120, 192
CviKI_1	RGCY	3 cut(s)	29, 120, 192
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	233
FaeI	CATG	6 cut(s)	35, 43, 70, 82, 231, 257
FaiI	YATR	6 cut(s)	33, 41, 68, 80, 229, 255
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	6 cut(s)	31, 39, 66, 78, 227, 253
FblI	GTMKAC	1 cut(s)	209
Fnu4HI	GCNGC	2 cut(s)	5, 90
FokI	GGATG	2 cut(s)	94, 194
Fsp4HI	GCNGC	2 cut(s)	5, 90
GluI	GCNGC	2 cut(s)	5, 90
HaeIII	GGCC	1 cut(s)	192
Hin1II	CATG	6 cut(s)	35, 43, 70, 82, 231, 257
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	3 cut(s)	76, 210, 293
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	2 cut(s)	32, 174
Hpy8I	GTNNAC	3 cut(s)	76, 210, 293
HpyAV	CCTTC	1 cut(s)	171
HpyCH4V	TGCA	3 cut(s)	7, 70, 82
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	6 cut(s)	35, 43, 70, 82, 231, 257
LmnI	GCTCC	2 cut(s)	47, 117
LpnPI	CCDG	5 cut(s)	78, 159, 164, 198, 209
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	2 cut(s)	116, 272
MaeIII	GTNAC	1 cut(s)	153
MboII	GAAGA	1 cut(s)	248
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	1 cut(s)	23
MluNI	TGGCCA	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	25
Mox20I	TGGCCA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	192
NlaIII	CATG	6 cut(s)	35, 43, 70, 82, 231, 257
NspI	RCATGY	2 cut(s)	82, 257
PagI	TCATGA	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	6, 91
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	282
SatI	GCNGC	2 cut(s)	5, 90
SetI	ASST	2 cut(s)	31, 122
SfaNI	GCATC	2 cut(s)	116, 272
SmiMI	CAYNNNNRTG	1 cut(s)	282
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	2 cut(s)	96, 105
TaqI	TCGA	1 cut(s)	140
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	1 cut(s)	23
TatI	WGTACW	1 cut(s)	292
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	2 cut(s)	4, 89
TspDTI	ATGAA	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	1 cut(s)	193
XceI	RCATGY	2 cut(s)	82, 257
XmiI	GTMKAC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.