Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005255.1

Orthogroup ID

OG0019019

Physical Location & Seq

Genomic Coordinates Reverse (-)

103404 .. 104665

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005255.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgttccacagtttgctgtctcctccagctcatcctgtttggaagtgcaatggaaggattgcaacaacaatgacaaataaacgcaaagcaagcaccgacaacttgatgctgcaaccaccactcaaaaaattagctcatgatggcatggttggagcattaccaatgaactccatgcaagttgacatgcaaggggcagcaggcggattttccgcatccgttgggagcttgaatgttggtgtatcatcgatgtcccaccagttaccaaaggaacaaatgtcaggaagggatgtcagtggccaaatggtaaaggggtctactggtgttgctcaggcatggaaagaagagaccgatgttgggcatgtagtcgcatctttgtttgaacattttggtggaagtgtactcccctttactcccaaatcagagttatcttttttcttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

146

Amino Acids

15.54

Weight (kDa)

8.86

Isoelectric Point (pI)

30.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019019)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0042091 RchiOBHm_Chr5g0042131 RchiOBHm_Chr5g0042141
rosa_multiflora	Rmu_co8371599.1_g000001 Rmu_sc0005255.1_g000022 Rmu_sc0026312.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065110
rosa_rugosa	Rorug05G0198100
rosa_samantha	Rh5BG265700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	314
AciI	CCGC	2 cut(s)	201, 210
AcoI	YGGCCR	1 cut(s)	295
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	2 cut(s)	229, 380
AluBI	AGCT	3 cut(s)	29, 134, 225
AluI	AGCT	3 cut(s)	29, 134, 225
Alw26I	GTCTC	2 cut(s)	24, 338
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	2 cut(s)	109, 194
BalI	TGGCCA	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	96, 206
BccI	CCATC	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	24, 338
BisI	GCNGC	2 cut(s)	110, 195
BlsI	GCNGC	2 cut(s)	111, 196
BmsI	GCATC	3 cut(s)	96, 221, 377
BpmI	CTGGAG	1 cut(s)	9
Bpu10I	CCTNAGC	1 cut(s)	327
Bsa29I	ATCGAT	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse1I	ACTGG	2 cut(s)	256, 322
Bse3DI	GCAATG	1 cut(s)	55
BseCI	ATCGAT	1 cut(s)	245
BseGI	GGATG	3 cut(s)	31, 212, 292
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	2 cut(s)	256, 322
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	2 cut(s)	96, 206
BshFI	GGCC	1 cut(s)	297
BshVI	ATCGAT	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	2 cut(s)	24, 338
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	297
Bso31I	GGTCTC	1 cut(s)	338
BspACI	CCGC	2 cut(s)	201, 210
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	340
BspDI	ATCGAT	1 cut(s)	245
BspHI	TCATGA	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	256, 322
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	91, 199
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	3 cut(s)	31, 212, 292
BstMAI	GTCTC	2 cut(s)	24, 338
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstNSI	RCATGY	2 cut(s)	187, 362
BstV1I	GCAGC	2 cut(s)	96, 206
Bsu15I	ATCGAT	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	297
BsuTUI	ATCGAT	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	31, 212, 292
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	91, 199
CciI	TCATGA	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	6 cut(s)	137, 145, 172, 184, 333, 359
CviJI	RGCY	4 cut(s)	29, 134, 225, 297
CviKI_1	RGCY	4 cut(s)	29, 134, 225, 297
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
EciI	GGCGGA	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	338
FaeI	CATG	6 cut(s)	140, 148, 175, 187, 336, 362
FaiI	YATR	6 cut(s)	138, 146, 173, 185, 334, 360
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	6 cut(s)	136, 144, 171, 183, 332, 358
FblI	GTMKAC	1 cut(s)	314
Fnu4HI	GCNGC	2 cut(s)	110, 195
FokI	GGATG	3 cut(s)	18, 199, 299
Fsp4HI	GCNGC	2 cut(s)	110, 195
GluI	GCNGC	2 cut(s)	110, 195
GsuI	CTGGAG	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	297
Hin1II	CATG	6 cut(s)	140, 148, 175, 187, 336, 362
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	181, 315, 398
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	2 cut(s)	137, 279
Hpy8I	GTNNAC	3 cut(s)	181, 315, 398
HpyAV	CCTTC	2 cut(s)	48, 276
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	5 cut(s)	48, 62, 112, 175, 187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	6 cut(s)	140, 148, 175, 187, 336, 362
LmnI	GCTCC	2 cut(s)	152, 222
LpnPI	CCDG	7 cut(s)	39, 48, 183, 264, 269, 303, 314
Lsp1109I	GCAGC	2 cut(s)	96, 206
LweI	GCATC	3 cut(s)	96, 221, 377
MaeIII	GTNAC	1 cut(s)	258
MboII	GAAGA	1 cut(s)	353
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	297
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	1 cut(s)	33
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	90
NlaIII	CATG	6 cut(s)	140, 148, 175, 187, 336, 362
NspI	RCATGY	2 cut(s)	187, 362
PagI	TCATGA	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	111, 196
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	387
SatI	GCNGC	2 cut(s)	110, 195
SetI	ASST	3 cut(s)	31, 136, 227
SfaNI	GCATC	3 cut(s)	96, 221, 377
SmiMI	CAYNNNNRTG	1 cut(s)	387
Sse9I	AATT	1 cut(s)	128
SsiI	CCGC	2 cut(s)	201, 210
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	245
TaqII	GACCGA	1 cut(s)	362
TasI	AATT	1 cut(s)	128
TatI	WGTACW	1 cut(s)	397
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	2 cut(s)	109, 194
TspDTI	ATGAA	1 cut(s)	179
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	1 cut(s)	298
XceI	RCATGY	2 cut(s)	187, 362
XmiI	GTMKAC	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.