Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0019019

Physical Location & Seq

Genomic Coordinates Reverse (-)

19643474 .. 19646236

Gene Structure 2763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0198100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGAAGGAAGAATACTAATGAAATTGGGGGAAGTGGATCACAAGTTAAAGCTGTAAGGAATGATTATAATGTATCCAAATTTTGTGATCTGTGCATCAAGTTGGTGGATGCTGGACGTCGTCCTAATACTCATTTTGACAGAGAAGGATGGGAGAGTTTAGTAGTAAACTTCAGTAAAGAGACCGGCAATAACTATGATAAAACTCAATTGAAGAATAAGTGGGATTCACTTAAAATTGAATGGAAGTTGTGGAAAGAACTAGTTGGCAAGGAAACTGGTTTAGGATGGAATCCAAGCAAGGGTACTGTTGATGCACCTGCCGAATGGTGGCATAGTAAGATTCAGGTCAATCCTGAATATGCAAAACTGCGTAAAAAAGGTCTTAATCCTGAATTGGAGGAGAAGCTAGATAGAATGTTTTCAAACATTACAGCCACTGGTGAACATGCTTGGGCACCTTCTTGTGGAAACCTTCCATCTCCGAATTCAGACATATGCAAGGATGATGTGATTCCACTTGAAGGCAGTGATGATTCGGTGGATTTTACTCCAATAGAAATAAGTGGGGGTAAGGAAGGTGTTTCAAGGAGAGGGAAAAAAAGATTGACTGATGAAGCTGAATTACAAGCTAAAATGGAAAAGAAACCTAAAGGACCCATCGTTTTAGGCAAGCAGAAGATGGGAGGTGCTACAAAGTTGTCGCAACAAATAGATCGTTTTATTGATGTAGTTGAGAATAAGAGTGCTGGAACATTAAACAATGTGAAAAGCGCAGAAGGCTATACTATTGCTGAAGCGATGAAAGCACTTGAGTCTGTCCCTTATTGCGAGCCTGGAAGTCCTTTGTGGTTGTTTGCAACAAGACTCTTTTTGAATAAAGAAAAGAGAGAGATGTTTGCCACTATGAAAGATGATGTAATTAAGCTTATGGCTTCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

314

Amino Acids

35.08

Weight (kDa)

8.61

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	26 - 112	5.7e-20	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019019)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0042091 RchiOBHm_Chr5g0042131 RchiOBHm_Chr5g0042141
rosa_multiflora	Rmu_co8371599.1_g000001 Rmu_sc0005255.1_g000022 Rmu_sc0026312.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065110
rosa_rugosa	Rorug05G0198100
rosa_samantha	Rh5BG265700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
AarI	CACCTGC	1 cut(s)	328
AatII	GACGTC	1 cut(s)	121
Acc36I	ACCTGC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	457
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	80, 487
AcuI	CTGAAG	3 cut(s)	157, 816, 921
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	1 cut(s)	307
AfiI	CCNNNNNNNGG	4 cut(s)	302, 330, 467, 524
AgsI	TTSAA	6 cut(s)	214, 242, 426, 524, 588, 877
AhlI	ACTAGT	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	835
AluBI	AGCT	5 cut(s)	53, 409, 620, 632, 928
AluI	AGCT	5 cut(s)	53, 409, 620, 632, 928
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	46
AlwNI	CAGNNNCTG	1 cut(s)	440
ApoI	RAATTY	2 cut(s)	80, 487
Asp700I	GAANNNNTTC	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	776
AspS9I	GGNCC	1 cut(s)	656
AsuHPI	GGTGA	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	457
BarI	GAAGNNNNNNTAC	3 cut(s)	30, 609, 641
BccI	CCATC	5 cut(s)	144, 282, 487, 668, 676
BciT130I	CCWGG	1 cut(s)	837
BciVI	GTATCC	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	176
BcuI	ACTAGT	1 cut(s)	262
BfaI	CTAG	2 cut(s)	263, 410
BfuAI	ACCTGC	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	837
Bme18I	GGWCC	1 cut(s)	656
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	2 cut(s)	459, 658
BmrFI	CCNGG	1 cut(s)	837
BmsI	GCATC	3 cut(s)	100, 105, 304
BpuEI	CTTGAG	1 cut(s)	833
BsaHI	GRCGYC	1 cut(s)	118
BsaI	GGTCTC	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	4 cut(s)	302, 330, 467, 524
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	283, 445
BseBI	CCWGG	1 cut(s)	837
BseGI	GGATG	4 cut(s)	115, 155, 293, 511
BseLI	CCNNNNNNNGG	4 cut(s)	302, 330, 467, 524
BseNI	ACTGG	2 cut(s)	283, 445
BseRI	GAGGAG	1 cut(s)	416
BseSI	GKGCMC	1 cut(s)	460
BshNI	GGYRCC	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	806
BslI	CCNNNNNNNGG	4 cut(s)	302, 330, 467, 524
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	806
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	38, 88, 715
BspLI	GGNNCC	2 cut(s)	459, 658
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	457
BspTNI	GGTCTC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	283, 445
BssAI	RCCGGY	1 cut(s)	185
BssMI	GATC	3 cut(s)	38, 88, 715
BssNI	GRCGYC	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	837
Bst4CI	ACNGT	1 cut(s)	310
BstACI	GRCGYC	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	674, 833
BstF5I	GGATG	4 cut(s)	115, 155, 293, 511
BstHHI	GCGC	1 cut(s)	776
BstKTI	GATC	3 cut(s)	41, 91, 718
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	38, 88, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	780, 806
BstNI	CCWGG	1 cut(s)	837
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	835
BstSLI	GKGCMC	1 cut(s)	460
BsuI	GTATCC	1 cut(s)	85
BtgZI	GCGATG	1 cut(s)	815
BtsCI	GGATG	4 cut(s)	115, 155, 293, 511
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	2 cut(s)	438, 535
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	674, 833
CaiI	CAGNNNCTG	1 cut(s)	440
CfoI	GCGC	1 cut(s)	776
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	656
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	1 cut(s)	449
CviJI	RGCY	9 cut(s)	53, 409, 437, 620, 632, 783, 835, 928, 935
CviKI_1	RGCY	9 cut(s)	53, 409, 437, 620, 632, 783, 835, 928, 935
CviQI	GTAC	1 cut(s)	306
DpnI	GATC	3 cut(s)	40, 90, 717
DpnII	GATC	3 cut(s)	38, 88, 715
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	3 cut(s)	157, 816, 921
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	835
FaeI	CATG	1 cut(s)	452
FaqI	GGGAC	1 cut(s)	806
FatI	CATG	1 cut(s)	448
FauNDI	CATATG	1 cut(s)	497
FokI	GGATG	4 cut(s)	122, 162, 300, 518
FspBI	CTAG	2 cut(s)	263, 410
GlaI	GCGC	1 cut(s)	775
HapII	CCGG	1 cut(s)	186
HhaI	GCGC	1 cut(s)	776
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	1 cut(s)	452
Hin6I	GCGC	1 cut(s)	774
HinP1I	GCGC	1 cut(s)	774
HindIII	AAGCTT	1 cut(s)	926
HinfI	GANTC	7 cut(s)	227, 292, 343, 514, 536, 815, 867
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	2 cut(s)	169, 446
Hpy188I	TCNGA	2 cut(s)	486, 493
Hpy188III	TCNNGA	2 cut(s)	356, 392
Hpy8I	GTNNAC	2 cut(s)	169, 446
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	6 cut(s)	140, 471, 485, 518, 572, 773
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	5 cut(s)	96, 317, 365, 501, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	780, 806
HpySE526I	ACGT	1 cut(s)	118
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	452
HspAI	GCGC	1 cut(s)	774
Kzo9I	GATC	3 cut(s)	38, 88, 715
LweI	GCATC	3 cut(s)	100, 105, 304
MaeI	CTAG	2 cut(s)	263, 410
MaeII	ACGT	1 cut(s)	118
MalI	GATC	3 cut(s)	40, 90, 717
MboI	GATC	3 cut(s)	38, 88, 715
MboII	GAAGA	3 cut(s)	22, 226, 691
MfeI	CAATTG	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	8 cut(s)	24, 80, 209, 237, 395, 487, 623, 921
MlyI	GAGTC	2 cut(s)	824, 861
MnlI	CCTC	3 cut(s)	394, 587, 680
MroXI	GAANNNNTTC	1 cut(s)	421
MseI	TTAA	5 cut(s)	48, 234, 387, 758, 924
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	837
MunI	CAATTG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	837
MwoI	GCNNNNNNNGC	2 cut(s)	780, 806
NdeI	CATATG	1 cut(s)	497
NdeII	GATC	3 cut(s)	38, 88, 715
NlaIII	CATG	1 cut(s)	452
NlaIV	GGNNCC	2 cut(s)	459, 658
NspI	RCATGY	1 cut(s)	452
PaqCI	CACCTGC	1 cut(s)	328
PdmI	GAANNNNTTC	1 cut(s)	421
PfeI	GAWTC	5 cut(s)	227, 292, 343, 514, 536
PflFI	GACNNNGTC	1 cut(s)	120
PleI	GAGTC	2 cut(s)	823, 861
PpsI	GAGTC	2 cut(s)	823, 861
PpuMI	RGGWCCY	1 cut(s)	656
PsiI	TTATAA	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	835
PspGI	CCWGG	1 cut(s)	835
PspN4I	GGNNCC	2 cut(s)	459, 658
PspPI	GGNCC	1 cut(s)	656
PspPPI	RGGWCCY	1 cut(s)	656
PstNI	CAGNNNCTG	1 cut(s)	440
PsyI	GACNNNGTC	1 cut(s)	120
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
SaqAI	TTAA	5 cut(s)	48, 234, 387, 758, 924
Sau3AI	GATC	3 cut(s)	38, 88, 715
Sau96I	GGNCC	1 cut(s)	656
SchI	GAGTC	2 cut(s)	824, 861
ScrFI	CCNGG	1 cut(s)	837
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	3 cut(s)	100, 105, 304
SinI	GGWCC	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
SpeI	ACTAGT	1 cut(s)	262
Sse9I	AATT	8 cut(s)	24, 80, 209, 237, 395, 487, 623, 921
SspMI	CTAG	2 cut(s)	263, 410
StyD4I	CCNGG	1 cut(s)	835
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	121
TasI	AATT	8 cut(s)	24, 80, 209, 237, 395, 487, 623, 921
TfiI	GAWTC	5 cut(s)	227, 292, 343, 514, 536
Tru1I	TTAA	5 cut(s)	48, 234, 387, 758, 924
Tru9I	TTAA	5 cut(s)	48, 234, 387, 758, 924
TscAI	CASTG	2 cut(s)	445, 535
TspDTI	ATGAA	4 cut(s)	36, 630, 818, 923
TspRI	CASTG	2 cut(s)	445, 535
Tth111I	GACNNNGTC	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	656
XapI	RAATTY	2 cut(s)	80, 487
XceI	RCATGY	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	421
XspI	CTAG	2 cut(s)	263, 410
ZraI	GACGTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.