Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0019019

Physical Location & Seq

Genomic Coordinates Forward (+)

86883346 .. 86884224

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTACTCTCTTGTTTACCAAATCTTAAAAATTTGGGAGAATTATTCCTCTCTCTCTACATCACTTCAAGAGGTTCGGTTAGACAATTGCAACATGAGAGGTAACATTCCCGTTGATATAGACAACTTGAGTAGCTTGATAACGTTATCCCTATATCACAACCAATTAAGTGGATCAATTCCAACCTCAATGGGAAGACTACATAATCTCCAAGGTCTGTATCTACATGGCAACAAATTGCAGGGATATATCCCAAAAGAACTTTGTCAACTAAAAAACCTAGCCGAGTTTAATTTGTCTGAGAATCAACTCTCTGGTTCAATACCTTCCTGCTTAGGTAATTTAAGCACAACTCTAAGAGGGTTATTCTTACGGTCTAATTTGTTGAATTCCAGAATACCATCTACCTTGTGGGAACTTTCAGATATCTTAAAATTGAACTTGTCATCCAATTCTCTAATTGGACCTCTCTCAGATGATGTTGGTAATTTGAAAGTTGCCACACTAATAGATATACCAAAAAACATCGGGAGCCTACAGAAATTGCTCAACCTCTCTTTGGCAAATAATAATTTACAAGGAGCAATACCAAGTTCAGTTGGCAAGTTGCTCAGCTTGGAACTTTTGGATTTATCCAAAAATAATTTGTCTGGAGTGATTCCCAATTCTCTTAAAGCACTCTCATACCTCAAGTATCTGAATTTGTCTTTTAACAATCTGCAAGGGAAGTTCCAAATAGCGGGCCTTTCAAAAACTTGTTTGTTCAATCCTTTGTTTCAAACCATGGACTCTGTGGTGCATCCCAATTTCATGTTCCACCGTGCAAAAGGAAAACTAGCAGATCTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

283

Amino Acids

31.19

Weight (kDa)

9.11

Isoelectric Point (pI)

27.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	21 - 80	3.3e-06	Leucine rich repeat
LRR_14	PF23598	26 - 137	1.3e-06	Leucine-rich repeat region
LRR_14	PF23598	167 - 235	1e-05	Leucine-rich repeat region
LRR_8	PF13855	181 - 240	2.6e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019019)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0042091 RchiOBHm_Chr5g0042131 RchiOBHm_Chr5g0042141
rosa_multiflora	Rmu_co8371599.1_g000001 Rmu_sc0005255.1_g000022 Rmu_sc0026312.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065110
rosa_rugosa	Rorug05G0198100
rosa_samantha	Rh5BG265700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	740
AclI	AACGTT	1 cut(s)	143
AclWI	GGATC	1 cut(s)	181
AcsI	RAATTY	3 cut(s)	30, 388, 700
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	559, 739
AgsI	TTSAA	8 cut(s)	68, 321, 388, 439, 493, 750, 766, 779
AjuI	GAANNNNNNNTTGG	2 cut(s)	797, 829
AloI	GAACNNNNNNTCC	2 cut(s)	431, 463
AluBI	AGCT	2 cut(s)	135, 615
AluI	AGCT	2 cut(s)	135, 615
AlwI	GGATC	1 cut(s)	181
AoxI	GGCC	1 cut(s)	742
ApoI	RAATTY	3 cut(s)	30, 388, 700
AspS9I	GGNCC	2 cut(s)	464, 742
AvaII	GGWCC	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	202
BccI	CCATC	1 cut(s)	409
BfaI	CTAG	2 cut(s)	281, 836
BfmI	CTRYAG	1 cut(s)	536
BglII	AGATCT	1 cut(s)	841
BlpI	GCTNAGC	1 cut(s)	611
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	464, 742
BmiI	GGNNCC	1 cut(s)	533
BmsI	GCATC	1 cut(s)	808
BpiI	GAAGAC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	672
Bpu10I	CCTNAGC	1 cut(s)	334
Bpu1102I	GCTNAGC	1 cut(s)	611
BpuEI	CTTGAG	2 cut(s)	148, 674
BsaJI	CCNNGG	2 cut(s)	211, 783
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	559, 739
BseDI	CCNNGG	2 cut(s)	211, 783
BseGI	GGATG	2 cut(s)	446, 799
BseLI	CCNNNNNNNGG	2 cut(s)	559, 739
BseMII	CTCAG	3 cut(s)	291, 486, 625
BshFI	GGCC	1 cut(s)	744
BslI	CCNNNNNNNGG	2 cut(s)	559, 739
BsnI	GGCC	1 cut(s)	744
Bsp143I	GATC	2 cut(s)	173, 841
Bsp1720I	GCTNAGC	1 cut(s)	611
Bsp19I	CCATGG	1 cut(s)	783
BspACI	CCGC	1 cut(s)	740
BspANI	GGCC	1 cut(s)	744
BspCNI	CTCAG	3 cut(s)	292, 485, 624
BspLI	GGNNCC	1 cut(s)	533
BspPI	GGATC	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	211, 783
BssMI	GATC	2 cut(s)	173, 841
BssT1I	CCWWGG	2 cut(s)	211, 783
Bst4CI	ACNGT	2 cut(s)	375, 821
BstC8I	GCNNGC	1 cut(s)	742
BstDEI	CTNAG	5 cut(s)	300, 334, 356, 472, 611
BstDSI	CCRYGG	1 cut(s)	783
BstF5I	GGATG	2 cut(s)	446, 799
BstKTI	GATC	2 cut(s)	176, 844
BstMBI	GATC	2 cut(s)	173, 841
BstSFI	CTRYAG	1 cut(s)	536
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	841
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	841
BsuRI	GGCC	1 cut(s)	744
BtgI	CCRYGG	1 cut(s)	783
BtsCI	GGATG	2 cut(s)	446, 799
Cac8I	GCNNGC	1 cut(s)	742
Cfr13I	GGNCC	2 cut(s)	464, 742
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	4 cut(s)	94, 227, 784, 811
CviJI	RGCY	5 cut(s)	135, 284, 534, 615, 744
CviKI_1	RGCY	5 cut(s)	135, 284, 534, 615, 744
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	5 cut(s)	300, 334, 356, 472, 611
DpnI	GATC	2 cut(s)	175, 843
DpnII	GATC	2 cut(s)	173, 841
Eco130I	CCWWGG	2 cut(s)	211, 783
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	388
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	2 cut(s)	211, 783
ErhI	CCWWGG	2 cut(s)	211, 783
FaeI	CATG	4 cut(s)	97, 230, 787, 814
FatI	CATG	4 cut(s)	93, 226, 783, 810
FauI	CCCGC	1 cut(s)	733
FokI	GGATG	2 cut(s)	433, 786
FspBI	CTAG	2 cut(s)	281, 836
GsuI	CTGGAG	1 cut(s)	672
HaeIII	GGCC	1 cut(s)	744
Hin1II	CATG	4 cut(s)	97, 230, 787, 814
HincII	GTYRAC	1 cut(s)	269
HindII	GTYRAC	1 cut(s)	269
HinfI	GANTC	3 cut(s)	304, 658, 788
Hpy166II	GTNNAC	2 cut(s)	16, 269
Hpy188I	TCNGA	4 cut(s)	301, 424, 475, 699
Hpy188III	TCNNGA	4 cut(s)	68, 393, 529, 651
Hpy8I	GTNNAC	2 cut(s)	16, 269
HpyAV	CCTTC	1 cut(s)	336
HpyCH4III	ACNGT	2 cut(s)	375, 821
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	5 cut(s)	90, 241, 721, 799, 824
HpyF3I	CTNAG	5 cut(s)	300, 334, 356, 472, 611
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	4 cut(s)	97, 230, 787, 814
Kzo9I	GATC	2 cut(s)	173, 841
LmnI	GCTCC	2 cut(s)	531, 581
LpnPI	CCDG	5 cut(s)	227, 300, 343, 406, 636
LweI	GCATC	1 cut(s)	808
MaeI	CTAG	2 cut(s)	281, 836
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	2 cut(s)	175, 843
MboI	GATC	2 cut(s)	173, 841
MboII	GAAGA	1 cut(s)	207
MfeI	CAATTG	1 cut(s)	85
MflI	RGATCY	1 cut(s)	841
MlyI	GAGTC	1 cut(s)	782
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	8 cut(s)	58, 64, 92, 196, 353, 477, 563, 698
MseI	TTAA	8 cut(s)	26, 167, 291, 344, 431, 672, 711, 850
MunI	CAATTG	1 cut(s)	85
NcoI	CCATGG	1 cut(s)	783
NdeII	GATC	2 cut(s)	173, 841
NlaIII	CATG	4 cut(s)	97, 230, 787, 814
NlaIV	GGNNCC	1 cut(s)	533
NmeAIII	GCCGAG	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	304, 658
PleI	GAGTC	1 cut(s)	782
PpsI	GAGTC	1 cut(s)	782
Psp1406I	AACGTT	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	533
PspPI	GGNCC	2 cut(s)	464, 742
PsuI	RGATCY	1 cut(s)	841
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	8 cut(s)	26, 167, 291, 344, 431, 672, 711, 850
Sau3AI	GATC	2 cut(s)	173, 841
Sau96I	GGNCC	2 cut(s)	464, 742
SchI	GAGTC	1 cut(s)	782
SfaNI	GCATC	1 cut(s)	808
SfcI	CTRYAG	1 cut(s)	536
SinI	GGWCC	1 cut(s)	464
SmlI	CTYRAG	2 cut(s)	127, 689
SmoI	CTYRAG	2 cut(s)	127, 689
SsiI	CCGC	1 cut(s)	740
SspMI	CTAG	2 cut(s)	281, 836
StyI	CCWWGG	2 cut(s)	211, 783
TaaI	ACNGT	2 cut(s)	375, 821
TaiI	ACGT	1 cut(s)	146
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	304, 658
Tru1I	TTAA	8 cut(s)	26, 167, 291, 344, 431, 672, 711, 850
Tru9I	TTAA	8 cut(s)	26, 167, 291, 344, 431, 672, 711, 850
TspDTI	ATGAA	1 cut(s)	799
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	3 cut(s)	30, 388, 700
XcmI	CCANNNNNNNNNTGG	2 cut(s)	408, 790
XspI	CTAG	2 cut(s)	281, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.