DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0042251 RchiOBHm_Chr5g0042301 |
| rosa_multiflora | Rmu_sc0001715.1_g000010 Rmu_sc0001715.1_g000024 Rmu_sc0034236.1_g000001 |
| rosa_samantha | Rh5AG283700 Rh5BG289700 Rh5CG321000 Rh5CG321100 Rh5CG321700 Rh5DG299000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 301 |
| AfaI | GTAC | 1 cut(s) | 278 |
| AgsI | TTSAA | 3 cut(s) | 54, 205, 241 |
| AjnI | CCWGG | 1 cut(s) | 343 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 52, 84 |
| AluBI | AGCT | 3 cut(s) | 6, 117, 197 |
| AluI | AGCT | 3 cut(s) | 6, 117, 197 |
| Alw21I | GWGCWC | 1 cut(s) | 39 |
| AoxI | GGCC | 1 cut(s) | 250 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 209 |
| AsuHPI | GGTGA | 1 cut(s) | 254 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 269, 301 |
| Bbv12I | GWGCWC | 1 cut(s) | 39 |
| BccI | CCATC | 2 cut(s) | 364, 401 |
| BciT130I | CCWGG | 1 cut(s) | 345 |
| BfaI | CTAG | 1 cut(s) | 174 |
| BfmI | CTRYAG | 1 cut(s) | 18 |
| Bme1390I | CCNGG | 1 cut(s) | 345 |
| BmrFI | CCNGG | 1 cut(s) | 345 |
| BmsI | GCATC | 1 cut(s) | 233 |
| BpmI | CTGGAG | 1 cut(s) | 64 |
| BsaJI | CCNNGG | 2 cut(s) | 81, 344 |
| Bse1I | ACTGG | 2 cut(s) | 47, 244 |
| BseBI | CCWGG | 1 cut(s) | 345 |
| BseDI | CCNNGG | 2 cut(s) | 81, 344 |
| BseNI | ACTGG | 2 cut(s) | 47, 244 |
| BshFI | GGCC | 1 cut(s) | 252 |
| BsiHKAI | GWGCWC | 1 cut(s) | 39 |
| BsmI | GAATGC | 1 cut(s) | 376 |
| BsnI | GGCC | 1 cut(s) | 252 |
| Bsp1286I | GDGCHC | 1 cut(s) | 39 |
| BspANI | GGCC | 1 cut(s) | 252 |
| BsrI | ACTGG | 2 cut(s) | 47, 244 |
| BssECI | CCNNGG | 2 cut(s) | 81, 344 |
| BssNAI | GTATAC | 1 cut(s) | 302 |
| BssT1I | CCWWGG | 1 cut(s) | 81 |
| Bst1107I | GTATAC | 1 cut(s) | 302 |
| Bst2UI | CCWGG | 1 cut(s) | 345 |
| BstEII | GGTNACC | 1 cut(s) | 409 |
| BstNI | CCWGG | 1 cut(s) | 345 |
| BstPI | GGTNACC | 1 cut(s) | 409 |
| BstSCI | CCNGG | 1 cut(s) | 343 |
| BstSFI | CTRYAG | 1 cut(s) | 18 |
| BstZ17I | GTATAC | 1 cut(s) | 302 |
| BsuRI | GGCC | 1 cut(s) | 252 |
| Csp6I | GTAC | 1 cut(s) | 277 |
| CviAII | CATG | 1 cut(s) | 136 |
| CviJI | RGCY | 6 cut(s) | 6, 68, 117, 197, 252, 343 |
| CviKI_1 | RGCY | 6 cut(s) | 6, 68, 117, 197, 252, 343 |
| CviQI | GTAC | 1 cut(s) | 277 |
| Eco130I | CCWWGG | 1 cut(s) | 81 |
| Eco91I | GGTNACC | 1 cut(s) | 409 |
| EcoO65I | GGTNACC | 1 cut(s) | 409 |
| EcoRII | CCWGG | 1 cut(s) | 343 |
| EcoT14I | CCWWGG | 1 cut(s) | 81 |
| ErhI | CCWWGG | 1 cut(s) | 81 |
| FaeI | CATG | 1 cut(s) | 139 |
| FatI | CATG | 1 cut(s) | 135 |
| FblI | GTMKAC | 1 cut(s) | 301 |
| FspBI | CTAG | 1 cut(s) | 174 |
| GsuI | CTGGAG | 1 cut(s) | 64 |
| HaeIII | GGCC | 1 cut(s) | 252 |
| Hin1II | CATG | 1 cut(s) | 139 |
| HincII | GTYRAC | 1 cut(s) | 133 |
| HindII | GTYRAC | 1 cut(s) | 133 |
| HindIII | AAGCTT | 2 cut(s) | 115, 195 |
| HinfI | GANTC | 2 cut(s) | 158, 309 |
| HphI | GGTGA | 1 cut(s) | 254 |
| Hpy166II | GTNNAC | 2 cut(s) | 133, 302 |
| Hpy8I | GTNNAC | 2 cut(s) | 133, 302 |
| HpyAV | CCTTC | 3 cut(s) | 199, 358, 400 |
| HpyCH4V | TGCA | 1 cut(s) | 374 |
| Hsp92II | CATG | 1 cut(s) | 139 |
| LpnPI | CCDG | 6 cut(s) | 28, 173, 257, 330, 357, 382 |
| LweI | GCATC | 1 cut(s) | 233 |
| MaeI | CTAG | 1 cut(s) | 174 |
| MaeIII | GTNAC | 2 cut(s) | 260, 409 |
| MboII | GAAGA | 3 cut(s) | 36, 229, 373 |
| MfeI | CAATTG | 2 cut(s) | 60, 124 |
| MhlI | GDGCHC | 1 cut(s) | 39 |
| MluCI | AATT | 2 cut(s) | 60, 124 |
| MlyI | GAGTC | 1 cut(s) | 318 |
| MnlI | CCTC | 2 cut(s) | 214, 263 |
| MroXI | GAANNNNTTC | 1 cut(s) | 209 |
| MseI | TTAA | 1 cut(s) | 291 |
| MspR9I | CCNGG | 1 cut(s) | 345 |
| MunI | CAATTG | 2 cut(s) | 60, 124 |
| Mva1269I | GAATGC | 1 cut(s) | 376 |
| MvaI | CCWGG | 1 cut(s) | 345 |
| NlaIII | CATG | 1 cut(s) | 139 |
| NmuCI | GTSAC | 1 cut(s) | 260 |
| PctI | GAATGC | 1 cut(s) | 376 |
| PdmI | GAANNNNTTC | 1 cut(s) | 209 |
| PfeI | GAWTC | 1 cut(s) | 158 |
| PleI | GAGTC | 1 cut(s) | 317 |
| PpsI | GAGTC | 1 cut(s) | 317 |
| Psp6I | CCWGG | 1 cut(s) | 343 |
| PspEI | GGTNACC | 1 cut(s) | 409 |
| PspGI | CCWGG | 1 cut(s) | 343 |
| RsaI | GTAC | 1 cut(s) | 278 |
| RsaNI | GTAC | 1 cut(s) | 277 |
| SaqAI | TTAA | 1 cut(s) | 291 |
| SchI | GAGTC | 1 cut(s) | 318 |
| ScrFI | CCNGG | 1 cut(s) | 345 |
| SduI | GDGCHC | 1 cut(s) | 39 |
| SetI | ASST | 6 cut(s) | 8, 36, 119, 199, 401, 411 |
| SfaNI | GCATC | 1 cut(s) | 233 |
| SfcI | CTRYAG | 1 cut(s) | 18 |
| Sse9I | AATT | 2 cut(s) | 60, 124 |
| SspMI | CTAG | 1 cut(s) | 174 |
| StyD4I | CCNGG | 1 cut(s) | 343 |
| StyI | CCWWGG | 1 cut(s) | 81 |
| TaqI | TCGA | 1 cut(s) | 359 |
| TasI | AATT | 2 cut(s) | 60, 124 |
| TfiI | GAWTC | 1 cut(s) | 158 |
| Tru1I | TTAA | 1 cut(s) | 291 |
| Tru9I | TTAA | 1 cut(s) | 291 |
| TseFI | GTSAC | 1 cut(s) | 260 |
| Tsp45I | GTSAC | 1 cut(s) | 260 |
| TspDTI | ATGAA | 4 cut(s) | 60, 171, 222, 277 |
| XmiI | GTMKAC | 1 cut(s) | 301 |
| XmnI | GAANNNNTTC | 1 cut(s) | 209 |
| XspI | CTAG | 1 cut(s) | 174 |