Rmu_sc0034236.1_g000001

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034236.1
OG0018192
Physical Location & Seq
Reverse (-)
199 .. 660
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034236.1_g000001.1.cds

Sequence Viewer

Length: 462 bp
atgagtagtaaggtggaaagcttttccaattgggttgacatggatattgatgatgataatgaatctgttgatttgactagcatacataatctgggagaagcttttttgaaggatttctgtaaggaggcatcagtttcattcttcaaccagtatggcctcattagtcaccaaataaactcgtacaatgacttcattaaaaatggtatacaaagagtctttgatagttttgatgagattatagttgagcctgggtatgacccatcgaagaaggggaatgcagaatggcgatatgcttccatcaggtttgggaaggttaccctcattcgacaaagtttttggggcggtgctgtgaatgataaggagtataatatgctacctaggcatgctcggcttcaaaatatgacatactcagccaagatcaaagtgaacgttactgttgaggtaaacaaattagattgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169
Pfam Domains
Protein Families
RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

153

Amino Acids

17.59

Weight (kDa)

5.16

Isoelectric Point (pI)

19.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 205
AciI CCGC 1 cut(s) 342
AclI AACGTT 1 cut(s) 429
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 3 cut(s) 109, 145, 395
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 2 cut(s) 21, 101
AluI AGCT 2 cut(s) 21, 101
AoxI GGCC 1 cut(s) 154
ArsI GACNNNNNNTTYG 2 cut(s) 318, 350
Asp700I GAANNNNTTC 1 cut(s) 113
AspA2I CCTAGG 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 158
AvrII CCTAGG 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BccI CCATC 2 cut(s) 268, 305
BciT130I CCWGG 1 cut(s) 249
BfaI CTAG 3 cut(s) 78, 378, 460
BlnI CCTAGG 1 cut(s) 377
Bme1390I CCNGG 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 248, 377
Bse1I ACTGG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 248, 377
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 148
BshFI GGCC 1 cut(s) 156
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 417
BspACI CCGC 1 cut(s) 342
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 422
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 248, 377
BssMI GATC 1 cut(s) 417
BssNAI GTATAC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 377
Bst1107I GTATAC 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 436
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 1 cut(s) 409
BstEII GGTNACC 1 cut(s) 313
BstKTI GATC 1 cut(s) 420
BstMBI GATC 1 cut(s) 417
BstMWI GCNNNNNNNGC 2 cut(s) 379, 388
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 386
BstPI GGTNACC 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 247
BstZ17I GTATAC 1 cut(s) 206
BsuRI GGCC 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 181
CviAII CATG 2 cut(s) 40, 383
CviJI RGCY 6 cut(s) 21, 101, 156, 247, 391, 413
CviKI_1 RGCY 6 cut(s) 21, 101, 156, 247, 391, 413
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 409
DpnI GATC 1 cut(s) 419
DpnII GATC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 377
Eco91I GGTNACC 1 cut(s) 313
EcoO65I GGTNACC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 2 cut(s) 43, 386
FatI CATG 2 cut(s) 39, 382
FblI GTMKAC 1 cut(s) 205
FspBI CTAG 3 cut(s) 78, 378, 460
HaeIII GGCC 1 cut(s) 156
Hin1II CATG 2 cut(s) 43, 386
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 2 cut(s) 19, 99
HinfI GANTC 2 cut(s) 62, 213
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 4 cut(s) 37, 206, 427, 445
Hpy8I GTNNAC 4 cut(s) 37, 206, 427, 445
HpyAV CCTTC 3 cut(s) 103, 262, 304
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 379, 388
HpyF3I CTNAG 1 cut(s) 409
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 2 cut(s) 43, 386
Kzo9I GATC 1 cut(s) 417
LpnPI CCDG 5 cut(s) 77, 161, 234, 261, 286
LweI GCATC 1 cut(s) 137
MaeI CTAG 3 cut(s) 78, 378, 460
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 3 cut(s) 164, 313, 430
MalI GATC 1 cut(s) 419
MboI GATC 1 cut(s) 417
MboII GAAGA 2 cut(s) 133, 277
MfeI CAATTG 1 cut(s) 28
MluCI AATT 2 cut(s) 28, 449
MlyI GAGTC 1 cut(s) 222
MnlI CCTC 4 cut(s) 118, 167, 329, 433
MroXI GAANNNNTTC 1 cut(s) 113
MseI TTAA 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 249
MunI CAATTG 1 cut(s) 28
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 379, 388
NdeII GATC 1 cut(s) 417
NlaIII CATG 2 cut(s) 43, 386
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 1 cut(s) 164
NspI RCATGY 1 cut(s) 386
PaeI GCATGC 1 cut(s) 386
PctI GAATGC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 62
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp1406I AACGTT 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 313
PspGI CCWGG 1 cut(s) 247
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 195
Sau3AI GATC 1 cut(s) 417
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 249
SetI ASST 8 cut(s) 15, 23, 103, 305, 315, 379, 432, 444
SfaNI GCATC 1 cut(s) 137
SphI GCATGC 1 cut(s) 386
Sse9I AATT 2 cut(s) 28, 449
SsiI CCGC 1 cut(s) 342
SspMI CTAG 3 cut(s) 78, 378, 460
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 1 cut(s) 436
TaiI ACGT 1 cut(s) 432
TaqI TCGA 2 cut(s) 263, 325
TasI AATT 2 cut(s) 28, 449
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 3 cut(s) 75, 126, 181
XceI RCATGY 1 cut(s) 386
XmaJI CCTAGG 1 cut(s) 377
XmiI GTMKAC 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 3 cut(s) 78, 378, 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.