Rmu_sc0001715.1_g000010

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001715.1
OG0018192
Physical Location & Seq
Forward (+)
27862 .. 29233
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001715.1_g000010.1.cds

Sequence Viewer

Length: 813 bp
atgagtagtgagggggaaagcttttccaattgggttgacatggatattgatgatgataatgaatctgttgatttgactagcatacataatctgggagaagcttttttgaaggatttctgtaaggaggcatcagtttcattcttcaaccagtatggcctcattagtcaccaaataaactcgtacaatgacttcattaaaaatggtatacaaagagtctttgatagttttgatgagattatagttgagcctgggtatgacccatcaaagaaggggaatgcagaatggcaatatgcttccatcaggtttgggaaggttaccctcattcgacaaagtttttggggcggtgctgtgaatgataaggagtataatatgctacctaggcatgctcggcttcaaaatatgacatactcagccaagatcaaagtgaacgttactgttgaggtatatactcaaaatcttgtcagaagtgaaaagtttaaaactgggaaagaacaatgtcttgacaagcagattgtgactacagagagtagagatgtctttattggtaagctcccagtgatggtgaagtctgacttgtgttggatgaaagacgagaaagctgactgtgaatttgaccatggaggttattttataatcaagggtgcagagaagacctttattgcacaagagcagaactgtctgaagagacttctaattacaaataatcaggggatcacagtagcatataggtctgaggtaaggcggcatagactactaataatattatcagggatttctcaacttgaaaacattgaaggagtagagaaagtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169
Pfam Domains
Protein Families
RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

270

Amino Acids

30.97

Weight (kDa)

5.51

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 632
AccI GTMKAC 1 cut(s) 205
AciI CCGC 2 cut(s) 342, 742
AclI AACGTT 1 cut(s) 429
AclWI GGATC 1 cut(s) 719
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 1 cut(s) 701
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 559
AgsI TTSAA 5 cut(s) 109, 145, 395, 785, 794
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 4 cut(s) 21, 101, 550, 599
AluI AGCT 4 cut(s) 21, 101, 550, 599
Alw26I GTCTC 1 cut(s) 679
AlwI GGATC 1 cut(s) 719
AoxI GGCC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 608
ArsI GACNNNNNNTTYG 4 cut(s) 318, 350, 593, 625
Asp700I GAANNNNTTC 1 cut(s) 113
AspA2I CCTAGG 1 cut(s) 377
AsuHPI GGTGA 2 cut(s) 158, 574
AvrII CCTAGG 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BbsI GAAGAC 1 cut(s) 656
BccI CCATC 3 cut(s) 268, 305, 553
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 679
BfaI CTAG 2 cut(s) 78, 378
BfmI CTRYAG 1 cut(s) 519
BisI GCNGC 1 cut(s) 743
BlnI CCTAGG 1 cut(s) 377
BlsI GCNGC 1 cut(s) 744
Bme1390I CCNGG 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 249
BmrI ACTGGG 2 cut(s) 492, 548
BmsI GCATC 1 cut(s) 137
BmuI ACTGGG 2 cut(s) 492, 548
BpiI GAAGAC 1 cut(s) 656
BsaJI CCNNGG 3 cut(s) 248, 377, 616
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse1I ACTGG 3 cut(s) 148, 487, 554
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 3 cut(s) 248, 377, 616
BseGI GGATG 1 cut(s) 588
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMII CTCAG 2 cut(s) 423, 723
BseNI ACTGG 3 cut(s) 148, 487, 554
BsgI GTGCAG 1 cut(s) 663
BshFI GGCC 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 559
BsmAI GTCTC 1 cut(s) 679
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 417, 711
Bsp19I CCATGG 1 cut(s) 616
BspACI CCGC 2 cut(s) 342, 742
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 2 cut(s) 422, 724
BspPI GGATC 1 cut(s) 719
BsrI ACTGG 3 cut(s) 148, 487, 554
BssECI CCNNGG 3 cut(s) 248, 377, 616
BssMI GATC 2 cut(s) 417, 711
BssNAI GTATAC 1 cut(s) 206
BssT1I CCWWGG 2 cut(s) 377, 616
Bst1107I GTATAC 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 4 cut(s) 436, 605, 677, 718
Bst6I CTCTTC 1 cut(s) 677
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 409, 732
BstDSI CCRYGG 1 cut(s) 616
BstEII GGTNACC 1 cut(s) 313
BstF5I GGATG 1 cut(s) 588
BstKTI GATC 2 cut(s) 420, 714
BstMAI GTCTC 1 cut(s) 679
BstMBI GATC 2 cut(s) 417, 711
BstMWI GCNNNNNNNGC 2 cut(s) 379, 388
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 386
BstPI GGTNACC 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 519
BstV2I GAAGAC 1 cut(s) 656
BstZ17I GTATAC 1 cut(s) 206
BsuRI GGCC 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 616
BtsCI GGATG 1 cut(s) 588
BtsIMutI CAGTG 1 cut(s) 561
Cac8I GCNNGC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 181
CviAII CATG 3 cut(s) 40, 383, 617
CviJI RGCY 8 cut(s) 21, 101, 156, 247, 391, 413, 550, 599
CviKI_1 RGCY 8 cut(s) 21, 101, 156, 247, 391, 413, 550, 599
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 409, 732
DpnI GATC 2 cut(s) 419, 713
DpnII GATC 2 cut(s) 417, 711
DraI TTTAAA 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 677
EarI CTCTTC 1 cut(s) 677
Eco130I CCWWGG 2 cut(s) 377, 616
Eco57I CTGAAG 1 cut(s) 701
Eco91I GGTNACC 1 cut(s) 313
EcoO65I GGTNACC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 2 cut(s) 377, 616
ErhI CCWWGG 2 cut(s) 377, 616
FaeI CATG 3 cut(s) 43, 386, 620
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FatI CATG 3 cut(s) 39, 382, 616
FblI GTMKAC 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 743
FokI GGATG 1 cut(s) 595
Fsp4HI GCNGC 1 cut(s) 743
FspBI CTAG 2 cut(s) 78, 378
GluI GCNGC 1 cut(s) 743
HaeIII GGCC 1 cut(s) 156
Hin1II CATG 3 cut(s) 43, 386, 620
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 2 cut(s) 19, 99
HinfI GANTC 2 cut(s) 62, 213
HphI GGTGA 2 cut(s) 158, 574
Hpy166II GTNNAC 3 cut(s) 37, 206, 427
Hpy188I TCNGA 4 cut(s) 464, 571, 681, 733
Hpy188III TCNNGA 1 cut(s) 500
Hpy8I GTNNAC 3 cut(s) 37, 206, 427
HpyAV CCTTC 4 cut(s) 103, 262, 304, 788
HpyCH4III ACNGT 4 cut(s) 436, 605, 677, 718
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 3 cut(s) 278, 644, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 379, 388
HpyF3I CTNAG 2 cut(s) 409, 732
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 3 cut(s) 43, 386, 620
Kzo9I GATC 2 cut(s) 417, 711
LmnI GCTCC 1 cut(s) 555
LpnPI CCDG 9 cut(s) 77, 161, 234, 261, 286, 468, 567, 692, 753
LweI GCATC 1 cut(s) 137
MaeI CTAG 2 cut(s) 78, 378
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 4 cut(s) 164, 313, 430, 514
MalI GATC 2 cut(s) 419, 713
MboI GATC 2 cut(s) 417, 711
MboII GAAGA 3 cut(s) 133, 661, 694
MfeI CAATTG 1 cut(s) 28
MluCI AATT 3 cut(s) 28, 608, 693
MlyI GAGTC 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 560
MnlI CCTC 7 cut(s) 4, 118, 167, 329, 433, 614, 727
MroXI GAANNNNTTC 1 cut(s) 113
MseI TTAA 2 cut(s) 195, 477
MspR9I CCNGG 1 cut(s) 249
MunI CAATTG 1 cut(s) 28
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 379, 388
NcoI CCATGG 1 cut(s) 616
NdeII GATC 2 cut(s) 417, 711
NlaIII CATG 3 cut(s) 43, 386, 620
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 2 cut(s) 164, 514
NspI RCATGY 1 cut(s) 386
PaeI GCATGC 1 cut(s) 386
PctI GAATGC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 1 cut(s) 744
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PsiI TTATAA 1 cut(s) 632
Psp1406I AACGTT 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 313
PspGI CCWGG 1 cut(s) 247
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 2 cut(s) 195, 477
SatI GCNGC 1 cut(s) 743
Sau3AI GATC 2 cut(s) 417, 711
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 249
SfaNI GCATC 1 cut(s) 137
SfcI CTRYAG 1 cut(s) 519
SphI GCATGC 1 cut(s) 386
Sse9I AATT 3 cut(s) 28, 608, 693
SsiI CCGC 2 cut(s) 342, 742
SspI AATATT 1 cut(s) 762
SspMI CTAG 2 cut(s) 78, 378
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 2 cut(s) 377, 616
TaaI ACNGT 4 cut(s) 436, 605, 677, 718
TaiI ACGT 1 cut(s) 432
TaqI TCGA 1 cut(s) 325
TasI AATT 3 cut(s) 28, 608, 693
TauI GCSGC 1 cut(s) 745
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 195, 477
Tru9I TTAA 2 cut(s) 195, 477
TscAI CASTG 1 cut(s) 561
TseFI GTSAC 2 cut(s) 164, 514
Tsp45I GTSAC 2 cut(s) 164, 514
TspDTI ATGAA 4 cut(s) 75, 126, 181, 599
TspRI CASTG 1 cut(s) 561
XapI RAATTY 1 cut(s) 608
XceI RCATGY 1 cut(s) 386
XmaJI CCTAGG 1 cut(s) 377
XmiI GTMKAC 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 2 cut(s) 78, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.