DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0042251 RchiOBHm_Chr5g0042301 |
| rosa_multiflora | Rmu_sc0001715.1_g000010 Rmu_sc0001715.1_g000024 Rmu_sc0034236.1_g000001 |
| rosa_samantha | Rh5AG283700 Rh5BG289700 Rh5CG321000 Rh5CG321100 Rh5CG321700 Rh5DG299000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 74 |
| Acc16I | TGCGCA | 1 cut(s) | 105 |
| AciI | CCGC | 2 cut(s) | 184, 275 |
| AcsI | RAATTY | 1 cut(s) | 50 |
| AcuI | CTGAAG | 2 cut(s) | 143, 583 |
| AfaI | GTAC | 1 cut(s) | 263 |
| AgsI | TTSAA | 5 cut(s) | 227, 236, 375, 458, 503 |
| AluBI | AGCT | 2 cut(s) | 41, 117 |
| AluI | AGCT | 2 cut(s) | 41, 117 |
| Alw26I | GTCTC | 2 cut(s) | 121, 588 |
| AoxI | GGCC | 1 cut(s) | 604 |
| ApoI | RAATTY | 1 cut(s) | 50 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 35, 67 |
| AspLEI | GCGC | 1 cut(s) | 106 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 589 |
| BanII | GRGCYC | 1 cut(s) | 156 |
| BbsI | GAAGAC | 1 cut(s) | 98 |
| BcoDI | GTCTC | 2 cut(s) | 121, 588 |
| BfaI | CTAG | 1 cut(s) | 383 |
| BglII | AGATCT | 1 cut(s) | 337 |
| BisI | GCNGC | 1 cut(s) | 185 |
| BlsI | GCNGC | 1 cut(s) | 186 |
| BmsI | GCATC | 3 cut(s) | 352, 391, 519 |
| BpiI | GAAGAC | 1 cut(s) | 98 |
| BsaJI | CCNNGG | 3 cut(s) | 58, 307, 488 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 469, 499 |
| BseDI | CCNNGG | 3 cut(s) | 58, 307, 488 |
| BseMII | CTCAG | 2 cut(s) | 460, 527 |
| BsgI | GTGCAG | 1 cut(s) | 105 |
| BshFI | GGCC | 1 cut(s) | 606 |
| BsmAI | GTCTC | 2 cut(s) | 121, 588 |
| BsmI | GAATGC | 2 cut(s) | 445, 512 |
| BsnI | GGCC | 1 cut(s) | 606 |
| Bsp1286I | GDGCHC | 1 cut(s) | 156 |
| Bsp143I | GATC | 1 cut(s) | 337 |
| Bsp19I | CCATGG | 1 cut(s) | 58 |
| BspACI | CCGC | 2 cut(s) | 184, 275 |
| BspANI | GGCC | 1 cut(s) | 606 |
| BspCNI | CTCAG | 2 cut(s) | 459, 528 |
| BssECI | CCNNGG | 3 cut(s) | 58, 307, 488 |
| BssMI | GATC | 1 cut(s) | 337 |
| BssT1I | CCWWGG | 3 cut(s) | 58, 307, 488 |
| Bst4CI | ACNGT | 2 cut(s) | 47, 160 |
| Bst6I | CTCTTC | 2 cut(s) | 119, 424 |
| BstC8I | GCNNGC | 1 cut(s) | 367 |
| BstDEI | CTNAG | 2 cut(s) | 446, 536 |
| BstDSI | CCRYGG | 1 cut(s) | 58 |
| BstHHI | GCGC | 1 cut(s) | 106 |
| BstKTI | GATC | 1 cut(s) | 340 |
| BstMAI | GTCTC | 2 cut(s) | 121, 588 |
| BstMBI | GATC | 1 cut(s) | 337 |
| BstNSI | RCATGY | 1 cut(s) | 520 |
| BstV2I | GAAGAC | 1 cut(s) | 98 |
| BstX2I | RGATCY | 1 cut(s) | 337 |
| BstYI | RGATCY | 1 cut(s) | 337 |
| BsuRI | GGCC | 1 cut(s) | 606 |
| BtgI | CCRYGG | 1 cut(s) | 58 |
| BtsIMutI | CAGTG | 1 cut(s) | 264 |
| Cac8I | GCNNGC | 1 cut(s) | 367 |
| CfoI | GCGC | 1 cut(s) | 106 |
| Csp6I | GTAC | 1 cut(s) | 262 |
| CviAII | CATG | 3 cut(s) | 59, 517, 544 |
| CviJI | RGCY | 7 cut(s) | 25, 41, 117, 154, 557, 570, 606 |
| CviKI_1 | RGCY | 7 cut(s) | 25, 41, 117, 154, 557, 570, 606 |
| CviQI | GTAC | 1 cut(s) | 262 |
| DdeI | CTNAG | 2 cut(s) | 446, 536 |
| DpnI | GATC | 1 cut(s) | 339 |
| DpnII | GATC | 1 cut(s) | 337 |
| Eam1104I | CTCTTC | 2 cut(s) | 119, 424 |
| EarI | CTCTTC | 2 cut(s) | 119, 424 |
| Eco130I | CCWWGG | 3 cut(s) | 58, 307, 488 |
| Eco24I | GRGCYC | 1 cut(s) | 156 |
| Eco57I | CTGAAG | 2 cut(s) | 143, 583 |
| EcoT14I | CCWWGG | 3 cut(s) | 58, 307, 488 |
| EcoT22I | ATGCAT | 1 cut(s) | 512 |
| EcoT38I | GRGCYC | 1 cut(s) | 156 |
| ErhI | CCWWGG | 3 cut(s) | 58, 307, 488 |
| FaeI | CATG | 3 cut(s) | 62, 520, 547 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 31 |
| FatI | CATG | 3 cut(s) | 58, 516, 543 |
| Fnu4HI | GCNGC | 1 cut(s) | 185 |
| FriOI | GRGCYC | 1 cut(s) | 156 |
| Fsp4HI | GCNGC | 1 cut(s) | 185 |
| FspBI | CTAG | 1 cut(s) | 383 |
| FspI | TGCGCA | 1 cut(s) | 105 |
| GlaI | GCGC | 1 cut(s) | 105 |
| GluI | GCNGC | 1 cut(s) | 185 |
| HaeIII | GGCC | 1 cut(s) | 606 |
| HhaI | GCGC | 1 cut(s) | 106 |
| Hin1II | CATG | 3 cut(s) | 62, 520, 547 |
| Hin6I | GCGC | 1 cut(s) | 104 |
| HinP1I | GCGC | 1 cut(s) | 104 |
| HphI | GGTGA | 2 cut(s) | 16, 589 |
| Hpy166II | GTNNAC | 1 cut(s) | 262 |
| Hpy188I | TCNGA | 9 cut(s) | 13, 123, 175, 322, 342, 428, 449, 537, 602 |
| Hpy188III | TCNNGA | 2 cut(s) | 289, 398 |
| Hpy8I | GTNNAC | 1 cut(s) | 262 |
| HpyAV | CCTTC | 2 cut(s) | 230, 607 |
| HpyCH4III | ACNGT | 2 cut(s) | 47, 160 |
| HpyCH4IV | ACGT | 1 cut(s) | 479 |
| HpyCH4V | TGCA | 3 cut(s) | 86, 365, 510 |
| HpyF3I | CTNAG | 2 cut(s) | 446, 536 |
| HpySE526I | ACGT | 1 cut(s) | 479 |
| Hsp92II | CATG | 3 cut(s) | 62, 520, 547 |
| HspAI | GCGC | 1 cut(s) | 104 |
| Kzo9I | GATC | 1 cut(s) | 337 |
| LpnPI | CCDG | 4 cut(s) | 134, 195, 274, 297 |
| LweI | GCATC | 3 cut(s) | 352, 391, 519 |
| MaeI | CTAG | 1 cut(s) | 383 |
| MaeII | ACGT | 1 cut(s) | 479 |
| MaeIII | GTNAC | 1 cut(s) | 617 |
| MalI | GATC | 1 cut(s) | 339 |
| MboI | GATC | 1 cut(s) | 337 |
| MboII | GAAGA | 8 cut(s) | 103, 136, 309, 371, 441, 448, 470, 515 |
| MflI | RGATCY | 1 cut(s) | 337 |
| MhlI | GDGCHC | 1 cut(s) | 156 |
| MluCI | AATT | 3 cut(s) | 50, 135, 393 |
| MnlI | CCTC | 6 cut(s) | 56, 400, 425, 495, 533, 596 |
| Mph1103I | ATGCAT | 1 cut(s) | 512 |
| MslI | CAYNNNNRTG | 1 cut(s) | 515 |
| MspA1I | CMGCKG | 1 cut(s) | 275 |
| Mva1269I | GAATGC | 2 cut(s) | 445, 512 |
| NcoI | CCATGG | 1 cut(s) | 58 |
| NdeII | GATC | 1 cut(s) | 337 |
| NlaIII | CATG | 3 cut(s) | 62, 520, 547 |
| NmuCI | GTSAC | 1 cut(s) | 617 |
| NsbI | TGCGCA | 1 cut(s) | 105 |
| NsiI | ATGCAT | 1 cut(s) | 512 |
| NspI | RCATGY | 1 cut(s) | 520 |
| PctI | GAATGC | 2 cut(s) | 445, 512 |
| PkrI | GCNGC | 1 cut(s) | 186 |
| PsiI | TTATAA | 1 cut(s) | 74 |
| PsuI | RGATCY | 1 cut(s) | 337 |
| RsaI | GTAC | 1 cut(s) | 263 |
| RsaNI | GTAC | 1 cut(s) | 262 |
| RseI | CAYNNNNRTG | 1 cut(s) | 515 |
| SatI | GCNGC | 1 cut(s) | 185 |
| Sau3AI | GATC | 1 cut(s) | 337 |
| SduI | GDGCHC | 1 cut(s) | 156 |
| SetI | ASST | 7 cut(s) | 43, 67, 98, 119, 173, 482, 599 |
| SfaNI | GCATC | 3 cut(s) | 352, 391, 519 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 515 |
| Sse9I | AATT | 3 cut(s) | 50, 135, 393 |
| SsiI | CCGC | 2 cut(s) | 184, 275 |
| SspMI | CTAG | 1 cut(s) | 383 |
| StyI | CCWWGG | 3 cut(s) | 58, 307, 488 |
| TaaI | ACNGT | 2 cut(s) | 47, 160 |
| TaiI | ACGT | 1 cut(s) | 482 |
| TasI | AATT | 3 cut(s) | 50, 135, 393 |
| TatI | WGTACW | 1 cut(s) | 261 |
| TauI | GCSGC | 1 cut(s) | 187 |
| TscAI | CASTG | 1 cut(s) | 264 |
| TseFI | GTSAC | 1 cut(s) | 617 |
| Tsp45I | GTSAC | 1 cut(s) | 617 |
| TspDTI | ATGAA | 2 cut(s) | 342, 560 |
| TspRI | CASTG | 1 cut(s) | 264 |
| XapI | RAATTY | 1 cut(s) | 50 |
| XceI | RCATGY | 1 cut(s) | 520 |
| XspI | CTAG | 1 cut(s) | 383 |
| Zsp2I | ATGCAT | 1 cut(s) | 512 |