DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0042251 RchiOBHm_Chr5g0042301 |
| rosa_multiflora | Rmu_sc0001715.1_g000010 Rmu_sc0001715.1_g000024 Rmu_sc0034236.1_g000001 |
| rosa_samantha | Rh5AG283700 Rh5BG289700 Rh5CG321000 Rh5CG321100 Rh5CG321700 Rh5DG299000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 30 |
| AciI | CCGC | 1 cut(s) | 109 |
| AcuI | CTGAAG | 1 cut(s) | 68 |
| AfaI | GTAC | 1 cut(s) | 188 |
| AgsI | TTSAA | 4 cut(s) | 152, 300, 383, 428 |
| AluBI | AGCT | 1 cut(s) | 42 |
| AluI | AGCT | 1 cut(s) | 42 |
| Alw26I | GTCTC | 1 cut(s) | 46 |
| AspLEI | GCGC | 1 cut(s) | 31 |
| BanII | GRGCYC | 1 cut(s) | 81 |
| BcoDI | GTCTC | 1 cut(s) | 46 |
| BfaI | CTAG | 1 cut(s) | 308 |
| BglII | AGATCT | 1 cut(s) | 262 |
| BisI | GCNGC | 1 cut(s) | 110 |
| BlsI | GCNGC | 1 cut(s) | 111 |
| BmsI | GCATC | 2 cut(s) | 277, 316 |
| BsaJI | CCNNGG | 2 cut(s) | 232, 413 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 394, 424 |
| BseDI | CCNNGG | 2 cut(s) | 232, 413 |
| BseGI | GGATG | 1 cut(s) | 11 |
| BseMII | CTCAG | 1 cut(s) | 385 |
| BsmAI | GTCTC | 1 cut(s) | 46 |
| BsmI | GAATGC | 1 cut(s) | 370 |
| Bsp1286I | GDGCHC | 1 cut(s) | 81 |
| Bsp143I | GATC | 1 cut(s) | 262 |
| BspACI | CCGC | 1 cut(s) | 109 |
| BspCNI | CTCAG | 1 cut(s) | 384 |
| BssECI | CCNNGG | 2 cut(s) | 232, 413 |
| BssMI | GATC | 1 cut(s) | 262 |
| BssT1I | CCWWGG | 2 cut(s) | 232, 413 |
| Bst4CI | ACNGT | 2 cut(s) | 85, 158 |
| Bst6I | CTCTTC | 3 cut(s) | 44, 349, 378 |
| BstC8I | GCNNGC | 1 cut(s) | 292 |
| BstDEI | CTNAG | 1 cut(s) | 371 |
| BstF5I | GGATG | 1 cut(s) | 11 |
| BstHHI | GCGC | 1 cut(s) | 31 |
| BstKTI | GATC | 1 cut(s) | 265 |
| BstMAI | GTCTC | 1 cut(s) | 46 |
| BstMBI | GATC | 1 cut(s) | 262 |
| BstX2I | RGATCY | 1 cut(s) | 262 |
| BstYI | RGATCY | 1 cut(s) | 262 |
| BtsCI | GGATG | 1 cut(s) | 11 |
| BtsIMutI | CAGTG | 2 cut(s) | 163, 189 |
| Cac8I | GCNNGC | 1 cut(s) | 292 |
| CfoI | GCGC | 1 cut(s) | 31 |
| Csp6I | GTAC | 1 cut(s) | 187 |
| CviJI | RGCY | 2 cut(s) | 42, 79 |
| CviKI_1 | RGCY | 2 cut(s) | 42, 79 |
| CviQI | GTAC | 1 cut(s) | 187 |
| DdeI | CTNAG | 1 cut(s) | 371 |
| DpnI | GATC | 1 cut(s) | 264 |
| DpnII | GATC | 1 cut(s) | 262 |
| Eam1104I | CTCTTC | 3 cut(s) | 44, 349, 378 |
| EarI | CTCTTC | 3 cut(s) | 44, 349, 378 |
| Eco130I | CCWWGG | 2 cut(s) | 232, 413 |
| Eco24I | GRGCYC | 1 cut(s) | 81 |
| Eco57I | CTGAAG | 1 cut(s) | 68 |
| EcoT14I | CCWWGG | 2 cut(s) | 232, 413 |
| EcoT38I | GRGCYC | 1 cut(s) | 81 |
| ErhI | CCWWGG | 2 cut(s) | 232, 413 |
| FaiI | YATR | 7 cut(s) | 91, 93, 114, 194, 260, 276, 378 |
| Fnu4HI | GCNGC | 1 cut(s) | 110 |
| FokI | GGATG | 1 cut(s) | 18 |
| FriOI | GRGCYC | 1 cut(s) | 81 |
| Fsp4HI | GCNGC | 1 cut(s) | 110 |
| FspBI | CTAG | 1 cut(s) | 308 |
| FspI | TGCGCA | 1 cut(s) | 30 |
| GlaI | GCGC | 1 cut(s) | 30 |
| GluI | GCNGC | 1 cut(s) | 110 |
| HhaI | GCGC | 1 cut(s) | 31 |
| Hin6I | GCGC | 1 cut(s) | 29 |
| HinP1I | GCGC | 1 cut(s) | 29 |
| Hpy166II | GTNNAC | 1 cut(s) | 187 |
| Hpy188I | TCNGA | 6 cut(s) | 48, 100, 247, 267, 353, 374 |
| Hpy188III | TCNNGA | 2 cut(s) | 214, 323 |
| Hpy8I | GTNNAC | 1 cut(s) | 187 |
| HpyAV | CCTTC | 1 cut(s) | 155 |
| HpyCH4III | ACNGT | 2 cut(s) | 85, 158 |
| HpyCH4IV | ACGT | 1 cut(s) | 404 |
| HpyCH4V | TGCA | 2 cut(s) | 16, 290 |
| HpyF3I | CTNAG | 1 cut(s) | 371 |
| HpySE526I | ACGT | 1 cut(s) | 404 |
| HspAI | GCGC | 1 cut(s) | 29 |
| Kzo9I | GATC | 1 cut(s) | 262 |
| LpnPI | CCDG | 4 cut(s) | 59, 120, 199, 222 |
| LweI | GCATC | 2 cut(s) | 277, 316 |
| MaeI | CTAG | 1 cut(s) | 308 |
| MaeII | ACGT | 1 cut(s) | 404 |
| MalI | GATC | 1 cut(s) | 264 |
| MboI | GATC | 1 cut(s) | 262 |
| MboII | GAAGA | 6 cut(s) | 61, 234, 296, 366, 373, 395 |
| MflI | RGATCY | 1 cut(s) | 262 |
| MhlI | GDGCHC | 1 cut(s) | 81 |
| MluCI | AATT | 2 cut(s) | 60, 318 |
| MnlI | CCTC | 3 cut(s) | 325, 350, 420 |
| Mva1269I | GAATGC | 1 cut(s) | 370 |
| NdeII | GATC | 1 cut(s) | 262 |
| NsbI | TGCGCA | 1 cut(s) | 30 |
| PctI | GAATGC | 1 cut(s) | 370 |
| PkrI | GCNGC | 1 cut(s) | 111 |
| PsuI | RGATCY | 1 cut(s) | 262 |
| RsaI | GTAC | 1 cut(s) | 188 |
| RsaNI | GTAC | 1 cut(s) | 187 |
| SatI | GCNGC | 1 cut(s) | 110 |
| Sau3AI | GATC | 1 cut(s) | 262 |
| SduI | GDGCHC | 1 cut(s) | 81 |
| SetI | ASST | 4 cut(s) | 23, 44, 98, 407 |
| SfaNI | GCATC | 2 cut(s) | 277, 316 |
| Sse9I | AATT | 2 cut(s) | 60, 318 |
| SsiI | CCGC | 1 cut(s) | 109 |
| SspMI | CTAG | 1 cut(s) | 308 |
| StyI | CCWWGG | 2 cut(s) | 232, 413 |
| TaaI | ACNGT | 2 cut(s) | 85, 158 |
| TaiI | ACGT | 1 cut(s) | 407 |
| TasI | AATT | 2 cut(s) | 60, 318 |
| TatI | WGTACW | 1 cut(s) | 186 |
| TauI | GCSGC | 1 cut(s) | 112 |
| TscAI | CASTG | 2 cut(s) | 163, 189 |
| TspDTI | ATGAA | 1 cut(s) | 267 |
| TspRI | CASTG | 2 cut(s) | 163, 189 |
| XspI | CTAG | 1 cut(s) | 308 |