DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0042251 RchiOBHm_Chr5g0042301 |
| rosa_multiflora | Rmu_sc0001715.1_g000010 Rmu_sc0001715.1_g000024 Rmu_sc0034236.1_g000001 |
| rosa_samantha | Rh5AG283700 Rh5BG289700 Rh5CG321000 Rh5CG321100 Rh5CG321700 Rh5DG299000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 593 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1274 |
| AccI | GTMKAC | 1 cut(s) | 166 |
| AccIII | TCCGGA | 1 cut(s) | 945 |
| AciI | CCGC | 5 cut(s) | 303, 703, 1249, 1279, 1497 |
| AclI | AACGTT | 1 cut(s) | 390 |
| AclWI | GGATC | 1 cut(s) | 680 |
| AcoI | YGGCCR | 1 cut(s) | 372 |
| AcsI | RAATTY | 1 cut(s) | 569 |
| AcuI | CTGAAG | 3 cut(s) | 662, 1102, 1223 |
| AfaI | GTAC | 2 cut(s) | 143, 782 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 520, 1056 |
| AflIII | ACRYGT | 1 cut(s) | 1210 |
| AjnI | CCWGG | 2 cut(s) | 208, 1281 |
| AluBI | AGCT | 6 cut(s) | 62, 511, 560, 636, 1186, 1201 |
| AluI | AGCT | 6 cut(s) | 62, 511, 560, 636, 1186, 1201 |
| Alw26I | GTCTC | 3 cut(s) | 640, 1107, 1248 |
| AlwI | GGATC | 1 cut(s) | 680 |
| Ama87I | CYCGRG | 1 cut(s) | 1008 |
| Aor13HI | TCCGGA | 1 cut(s) | 945 |
| AoxI | GGCC | 3 cut(s) | 115, 372, 1123 |
| ApoI | RAATTY | 1 cut(s) | 569 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 279, 311, 554, 586 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 74 |
| AspA2I | CCTAGG | 1 cut(s) | 338 |
| AspLEI | GCGC | 1 cut(s) | 1233 |
| AsuHPI | GGTGA | 4 cut(s) | 119, 535, 1193, 1277 |
| AvaI | CYCGRG | 1 cut(s) | 1008 |
| AvrII | CCTAGG | 1 cut(s) | 338 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 134, 166 |
| BbsI | GAAGAC | 2 cut(s) | 617, 1451 |
| BccI | CCATC | 4 cut(s) | 229, 266, 514, 1366 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1058, 1092 |
| BciT130I | CCWGG | 2 cut(s) | 210, 1283 |
| BcoDI | GTCTC | 3 cut(s) | 640, 1107, 1248 |
| BfaI | CTAG | 5 cut(s) | 39, 339, 902, 1190, 1298 |
| BfmI | CTRYAG | 2 cut(s) | 480, 1305 |
| BglII | AGATCT | 1 cut(s) | 856 |
| BisI | GCNGC | 1 cut(s) | 704 |
| BlnI | CCTAGG | 1 cut(s) | 338 |
| BlsI | GCNGC | 1 cut(s) | 705 |
| Bme1390I | CCNGG | 2 cut(s) | 210, 1283 |
| BmeT110I | CYCGRG | 1 cut(s) | 1008 |
| BmrFI | CCNGG | 2 cut(s) | 210, 1283 |
| BmrI | ACTGGG | 2 cut(s) | 453, 509 |
| BmsI | GCATC | 8 cut(s) | 98, 871, 910, 1038, 1291, 1332, 1475, 1508 |
| BmuI | ACTGGG | 2 cut(s) | 453, 509 |
| BpiI | GAAGAC | 2 cut(s) | 617, 1451 |
| BpmI | CTGGAG | 2 cut(s) | 1312, 1365 |
| BsaAI | YACGTR | 1 cut(s) | 1213 |
| BsaI | GGTCTC | 1 cut(s) | 1248 |
| BsaJI | CCNNGG | 5 cut(s) | 209, 338, 577, 826, 1007 |
| BsaWI | WCCGGW | 1 cut(s) | 945 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 988, 1018, 1367, 1397, 1438, 1468 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 520, 1056 |
| Bse1I | ACTGG | 5 cut(s) | 109, 448, 515, 1348, 1515 |
| BseAI | TCCGGA | 1 cut(s) | 945 |
| BseBI | CCWGG | 2 cut(s) | 210, 1283 |
| BseDI | CCNNGG | 5 cut(s) | 209, 338, 577, 826, 1007 |
| BseGI | GGATG | 5 cut(s) | 549, 1357, 1377, 1386, 1499 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 520, 1056 |
| BseMII | CTCAG | 2 cut(s) | 684, 1069 |
| BseNI | ACTGG | 5 cut(s) | 109, 448, 515, 1348, 1515 |
| BseRI | GAGGAG | 1 cut(s) | 996 |
| BsgI | GTGCAG | 1 cut(s) | 624 |
| BshFI | GGCC | 3 cut(s) | 117, 374, 1125 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1008 |
| BsiSI | CCGG | 1 cut(s) | 946 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 520, 1056 |
| BsmAI | GTCTC | 3 cut(s) | 640, 1107, 1248 |
| BsmI | GAATGC | 5 cut(s) | 241, 897, 964, 1031, 1334 |
| BsnI | GGCC | 3 cut(s) | 117, 374, 1125 |
| Bso31I | GGTCTC | 1 cut(s) | 1248 |
| BsoBI | CYCGRG | 1 cut(s) | 1008 |
| Bsp13I | TCCGGA | 1 cut(s) | 945 |
| Bsp143I | GATC | 3 cut(s) | 378, 672, 856 |
| Bsp19I | CCATGG | 1 cut(s) | 577 |
| BspACI | CCGC | 5 cut(s) | 303, 703, 1249, 1279, 1497 |
| BspANI | GGCC | 3 cut(s) | 117, 374, 1125 |
| BspCNI | CTCAG | 2 cut(s) | 685, 1068 |
| BspEI | TCCGGA | 1 cut(s) | 945 |
| BspPI | GGATC | 1 cut(s) | 680 |
| BspTNI | GGTCTC | 1 cut(s) | 1248 |
| BsrI | ACTGG | 5 cut(s) | 109, 448, 515, 1348, 1515 |
| BssECI | CCNNGG | 5 cut(s) | 209, 338, 577, 826, 1007 |
| BssMI | GATC | 3 cut(s) | 378, 672, 856 |
| BssNAI | GTATAC | 1 cut(s) | 167 |
| BssT1I | CCWWGG | 3 cut(s) | 338, 577, 826 |
| Bst1107I | GTATAC | 1 cut(s) | 167 |
| Bst2UI | CCWGG | 2 cut(s) | 210, 1283 |
| Bst4CI | ACNGT | 5 cut(s) | 397, 566, 679, 1271, 1309 |
| Bst6I | CTCTTC | 2 cut(s) | 638, 972 |
| BstBAI | YACGTR | 1 cut(s) | 1213 |
| BstC8I | GCNNGC | 2 cut(s) | 345, 886 |
| BstDEI | CTNAG | 2 cut(s) | 693, 1055 |
| BstDSI | CCRYGG | 1 cut(s) | 577 |
| BstEII | GGTNACC | 2 cut(s) | 274, 1265 |
| BstF5I | GGATG | 5 cut(s) | 549, 1357, 1377, 1386, 1499 |
| BstHHI | GCGC | 1 cut(s) | 1233 |
| BstKTI | GATC | 3 cut(s) | 381, 675, 859 |
| BstMAI | GTCTC | 3 cut(s) | 640, 1107, 1248 |
| BstMBI | GATC | 3 cut(s) | 378, 672, 856 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 340, 349, 894, 1192 |
| BstNI | CCWGG | 2 cut(s) | 210, 1283 |
| BstNSI | RCATGY | 3 cut(s) | 347, 1039, 1223 |
| BstPI | GGTNACC | 2 cut(s) | 274, 1265 |
| BstSCI | CCNGG | 2 cut(s) | 208, 1281 |
| BstSFI | CTRYAG | 2 cut(s) | 480, 1305 |
| BstV2I | GAAGAC | 2 cut(s) | 617, 1451 |
| BstX2I | RGATCY | 1 cut(s) | 856 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 297 |
| BstYI | RGATCY | 1 cut(s) | 856 |
| BstZ17I | GTATAC | 1 cut(s) | 167 |
| BsuRI | GGCC | 3 cut(s) | 117, 374, 1125 |
| BtgI | CCRYGG | 1 cut(s) | 577 |
| BtsCI | GGATG | 5 cut(s) | 549, 1357, 1377, 1386, 1499 |
| BtsI | GCAGTG | 1 cut(s) | 1418 |
| BtsIMutI | CAGTG | 4 cut(s) | 522, 783, 1418, 1508 |
| Cac8I | GCNNGC | 2 cut(s) | 345, 886 |
| CfoI | GCGC | 1 cut(s) | 1233 |
| Csp6I | GTAC | 2 cut(s) | 142, 781 |
| CviAII | CATG | 6 cut(s) | 344, 578, 1036, 1063, 1220, 1234 |
| CviQI | GTAC | 2 cut(s) | 142, 781 |
| DdeI | CTNAG | 2 cut(s) | 693, 1055 |
| DpnI | GATC | 3 cut(s) | 380, 674, 858 |
| DpnII | GATC | 3 cut(s) | 378, 672, 856 |
| DraI | TTTAAA | 1 cut(s) | 439 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1274 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1274 |
| EaeI | YGGCCR | 1 cut(s) | 372 |
| Eam1104I | CTCTTC | 2 cut(s) | 638, 972 |
| EarI | CTCTTC | 2 cut(s) | 638, 972 |
| EciI | GGCGGA | 1 cut(s) | 1268 |
| Eco130I | CCWWGG | 3 cut(s) | 338, 577, 826 |
| Eco31I | GGTCTC | 1 cut(s) | 1248 |
| Eco32I | GATATC | 1 cut(s) | 1494 |
| Eco57I | CTGAAG | 3 cut(s) | 662, 1102, 1223 |
| Eco88I | CYCGRG | 1 cut(s) | 1008 |
| Eco91I | GGTNACC | 2 cut(s) | 274, 1265 |
| EcoO65I | GGTNACC | 2 cut(s) | 274, 1265 |
| EcoRII | CCWGG | 2 cut(s) | 208, 1281 |
| EcoRV | GATATC | 1 cut(s) | 1494 |
| EcoT14I | CCWWGG | 3 cut(s) | 338, 577, 826 |
| EcoT22I | ATGCAT | 1 cut(s) | 1031 |
| ErhI | CCWWGG | 3 cut(s) | 338, 577, 826 |
| FaeI | CATG | 6 cut(s) | 347, 581, 1039, 1066, 1223, 1237 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 518, 550 |
| FatI | CATG | 6 cut(s) | 343, 577, 1035, 1062, 1219, 1233 |
| FblI | GTMKAC | 1 cut(s) | 166 |
| Fnu4HI | GCNGC | 1 cut(s) | 704 |
| FokI | GGATG | 5 cut(s) | 556, 1344, 1384, 1393, 1486 |
| Fsp4HI | GCNGC | 1 cut(s) | 704 |
| FspBI | CTAG | 5 cut(s) | 39, 339, 902, 1190, 1298 |
| GlaI | GCGC | 1 cut(s) | 1232 |
| GluI | GCNGC | 1 cut(s) | 704 |
| GsuI | CTGGAG | 2 cut(s) | 1312, 1365 |
| HaeIII | GGCC | 3 cut(s) | 117, 374, 1125 |
| HapII | CCGG | 1 cut(s) | 946 |
| HhaI | GCGC | 1 cut(s) | 1233 |
| Hin1II | CATG | 6 cut(s) | 347, 581, 1039, 1066, 1223, 1237 |
| Hin6I | GCGC | 1 cut(s) | 1231 |
| HinP1I | GCGC | 1 cut(s) | 1231 |
| HindIII | AAGCTT | 1 cut(s) | 60 |
| HinfI | GANTC | 2 cut(s) | 23, 174 |
| HpaII | CCGG | 1 cut(s) | 946 |
| HphI | GGTGA | 4 cut(s) | 119, 535, 1193, 1277 |
| Hpy166II | GTNNAC | 3 cut(s) | 167, 388, 781 |
| Hpy188I | TCNGA | 9 cut(s) | 425, 532, 642, 694, 841, 861, 968, 1121, 1482 |
| Hpy188III | TCNNGA | 9 cut(s) | 461, 808, 917, 946, 1010, 1190, 1298, 1329, 1366 |
| Hpy8I | GTNNAC | 3 cut(s) | 167, 388, 781 |
| HpyAV | CCTTC | 9 cut(s) | 64, 223, 265, 749, 1126, 1198, 1221, 1469, 1513 |
| HpyCH4III | ACNGT | 5 cut(s) | 397, 566, 679, 1271, 1309 |
| HpyCH4IV | ACGT | 3 cut(s) | 390, 998, 1212 |
| HpyCH4V | TGCA | 7 cut(s) | 239, 605, 623, 884, 1029, 1223, 1423 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 340, 349, 894, 1192 |
| HpyF3I | CTNAG | 2 cut(s) | 693, 1055 |
| HpySE526I | ACGT | 3 cut(s) | 390, 998, 1212 |
| Hsp92II | CATG | 6 cut(s) | 347, 581, 1039, 1066, 1223, 1237 |
| HspAI | GCGC | 1 cut(s) | 1231 |
| Kpn2I | TCCGGA | 1 cut(s) | 945 |
| Kzo9I | GATC | 3 cut(s) | 378, 672, 856 |
| LmnI | GCTCC | 2 cut(s) | 516, 1346 |
| LweI | GCATC | 8 cut(s) | 98, 871, 910, 1038, 1291, 1332, 1475, 1508 |
| MaeI | CTAG | 5 cut(s) | 39, 339, 902, 1190, 1298 |
| MaeII | ACGT | 3 cut(s) | 390, 998, 1212 |
| MaeIII | GTNAC | 8 cut(s) | 125, 274, 391, 475, 850, 1136, 1265, 1312 |
| MalI | GATC | 3 cut(s) | 380, 674, 858 |
| MboI | GATC | 3 cut(s) | 378, 672, 856 |
| MflI | RGATCY | 1 cut(s) | 856 |
| MluCI | AATT | 4 cut(s) | 569, 654, 912, 1151 |
| MlyI | GAGTC | 1 cut(s) | 183 |
| MmeI | TCCRAC | 2 cut(s) | 521, 1460 |
| Mph1103I | ATGCAT | 1 cut(s) | 1031 |
| MroI | TCCGGA | 1 cut(s) | 945 |
| MroXI | GAANNNNTTC | 1 cut(s) | 74 |
| MseI | TTAA | 2 cut(s) | 156, 438 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1034 |
| MspI | CCGG | 1 cut(s) | 946 |
| MspR9I | CCNGG | 2 cut(s) | 210, 1283 |
| Mva1269I | GAATGC | 5 cut(s) | 241, 897, 964, 1031, 1334 |
| MvaI | CCWGG | 2 cut(s) | 210, 1283 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 340, 349, 894, 1192 |
| NcoI | CCATGG | 1 cut(s) | 577 |
| NdeII | GATC | 3 cut(s) | 378, 672, 856 |
| NlaIII | CATG | 6 cut(s) | 347, 581, 1039, 1066, 1223, 1237 |
| NmeAIII | GCCGAG | 2 cut(s) | 328, 350 |
| NmuCI | GTSAC | 4 cut(s) | 125, 475, 1136, 1265 |
| NsiI | ATGCAT | 1 cut(s) | 1031 |
| NspI | RCATGY | 3 cut(s) | 347, 1039, 1223 |
| PaeI | GCATGC | 1 cut(s) | 347 |
| PctI | GAATGC | 5 cut(s) | 241, 897, 964, 1031, 1334 |
| PdmI | GAANNNNTTC | 1 cut(s) | 74 |
| PfeI | GAWTC | 1 cut(s) | 23 |
| PkrI | GCNGC | 1 cut(s) | 705 |
| PleI | GAGTC | 1 cut(s) | 182 |
| PpsI | GAGTC | 1 cut(s) | 182 |
| Ppu21I | YACGTR | 1 cut(s) | 1213 |
| PsiI | TTATAA | 1 cut(s) | 593 |
| Psp1406I | AACGTT | 1 cut(s) | 390 |
| Psp6I | CCWGG | 2 cut(s) | 208, 1281 |
| PspEI | GGTNACC | 2 cut(s) | 274, 1265 |
| PspGI | CCWGG | 2 cut(s) | 208, 1281 |
| PsuI | RGATCY | 1 cut(s) | 856 |
| RsaI | GTAC | 2 cut(s) | 143, 782 |
| RsaNI | GTAC | 2 cut(s) | 142, 781 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1034 |
| SaqAI | TTAA | 2 cut(s) | 156, 438 |
| SatI | GCNGC | 1 cut(s) | 704 |
| Sau3AI | GATC | 3 cut(s) | 378, 672, 856 |
| SchI | GAGTC | 1 cut(s) | 183 |
| ScrFI | CCNGG | 2 cut(s) | 210, 1283 |
| SfaNI | GCATC | 8 cut(s) | 98, 871, 910, 1038, 1291, 1332, 1475, 1508 |
| SfcI | CTRYAG | 2 cut(s) | 480, 1305 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1034 |
| SphI | GCATGC | 1 cut(s) | 347 |
| Sse9I | AATT | 4 cut(s) | 569, 654, 912, 1151 |
| SsiI | CCGC | 5 cut(s) | 303, 703, 1249, 1279, 1497 |
| SspMI | CTAG | 5 cut(s) | 39, 339, 902, 1190, 1298 |
| StyD4I | CCNGG | 2 cut(s) | 208, 1281 |
| StyI | CCWWGG | 3 cut(s) | 338, 577, 826 |
| TaaI | ACNGT | 5 cut(s) | 397, 566, 679, 1271, 1309 |
| TaiI | ACGT | 3 cut(s) | 393, 1001, 1215 |
| TaqI | TCGA | 2 cut(s) | 224, 286 |
| TasI | AATT | 4 cut(s) | 569, 654, 912, 1151 |
| TatI | WGTACW | 1 cut(s) | 780 |
| TauI | GCSGC | 1 cut(s) | 706 |
| TfiI | GAWTC | 1 cut(s) | 23 |
| Tru1I | TTAA | 2 cut(s) | 156, 438 |
| Tru9I | TTAA | 2 cut(s) | 156, 438 |
| TscAI | CASTG | 4 cut(s) | 522, 783, 1425, 1515 |
| TseFI | GTSAC | 4 cut(s) | 125, 475, 1136, 1265 |
| Tsp45I | GTSAC | 4 cut(s) | 125, 475, 1136, 1265 |
| TspDTI | ATGAA | 6 cut(s) | 36, 87, 142, 560, 861, 1079 |
| TspRI | CASTG | 4 cut(s) | 522, 783, 1425, 1515 |
| XapI | RAATTY | 1 cut(s) | 569 |
| XbaI | TCTAGA | 2 cut(s) | 1189, 1297 |
| XceI | RCATGY | 3 cut(s) | 347, 1039, 1223 |
| XmaJI | CCTAGG | 1 cut(s) | 338 |
| XmiI | GTMKAC | 1 cut(s) | 166 |
| XmnI | GAANNNNTTC | 1 cut(s) | 74 |
| XspI | CTAG | 5 cut(s) | 39, 339, 902, 1190, 1298 |
| Zsp2I | ATGCAT | 1 cut(s) | 1031 |