DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0042251 RchiOBHm_Chr5g0042301 |
| rosa_multiflora | Rmu_sc0001715.1_g000010 Rmu_sc0001715.1_g000024 Rmu_sc0034236.1_g000001 |
| rosa_samantha | Rh5AG283700 Rh5BG289700 Rh5CG321000 Rh5CG321100 Rh5CG321700 Rh5DG299000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 336 |
| AcuI | CTGAAG | 2 cut(s) | 9, 178 |
| AflIII | ACRYGT | 1 cut(s) | 281 |
| AgsI | TTSAA | 2 cut(s) | 53, 98 |
| AluBI | AGCT | 2 cut(s) | 262, 277 |
| AluI | AGCT | 2 cut(s) | 262, 277 |
| Alw26I | GTCTC | 2 cut(s) | 183, 310 |
| Ama87I | CYCGRG | 1 cut(s) | 84 |
| AoxI | GGCC | 1 cut(s) | 199 |
| AspLEI | GCGC | 1 cut(s) | 295 |
| AsuC2I | CCSGG | 1 cut(s) | 345 |
| AsuHPI | GGTGA | 2 cut(s) | 184, 269 |
| AvaI | CYCGRG | 1 cut(s) | 84 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 134, 168 |
| BcnI | CCSGG | 1 cut(s) | 345 |
| BcoDI | GTCTC | 2 cut(s) | 183, 310 |
| BfaI | CTAG | 1 cut(s) | 266 |
| Bme1390I | CCNGG | 1 cut(s) | 345 |
| BmeT110I | CYCGRG | 1 cut(s) | 84 |
| BmrFI | CCNGG | 1 cut(s) | 345 |
| BmsI | GCATC | 1 cut(s) | 114 |
| BpuMI | CCSGG | 1 cut(s) | 345 |
| BsaI | GGTCTC | 1 cut(s) | 310 |
| BsaJI | CCNNGG | 1 cut(s) | 83 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 64, 94 |
| BseDI | CCNNGG | 1 cut(s) | 83 |
| BseMII | CTCAG | 1 cut(s) | 55 |
| BseRI | GAGGAG | 1 cut(s) | 72 |
| Bsh1285I | CGRYCG | 1 cut(s) | 332 |
| BshFI | GGCC | 1 cut(s) | 201 |
| BsiEI | CGRYCG | 1 cut(s) | 332 |
| BsiHKCI | CYCGRG | 1 cut(s) | 84 |
| BsiSI | CCGG | 1 cut(s) | 345 |
| BsmAI | GTCTC | 2 cut(s) | 183, 310 |
| BsmI | GAATGC | 2 cut(s) | 40, 107 |
| BsnI | GGCC | 1 cut(s) | 201 |
| Bso31I | GGTCTC | 1 cut(s) | 310 |
| BsoBI | CYCGRG | 1 cut(s) | 84 |
| BspANI | GGCC | 1 cut(s) | 201 |
| BspCNI | CTCAG | 1 cut(s) | 54 |
| BspTNI | GGTCTC | 1 cut(s) | 310 |
| BssECI | CCNNGG | 1 cut(s) | 83 |
| Bst4CI | ACNGT | 2 cut(s) | 189, 333 |
| Bst6I | CTCTTC | 1 cut(s) | 48 |
| BstDEI | CTNAG | 1 cut(s) | 41 |
| BstHHI | GCGC | 1 cut(s) | 295 |
| BstMAI | GTCTC | 2 cut(s) | 183, 310 |
| BstMCI | CGRYCG | 1 cut(s) | 332 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 268 |
| BstNSI | RCATGY | 2 cut(s) | 115, 285 |
| BstSCI | CCNGG | 1 cut(s) | 343 |
| BsuRI | GGCC | 1 cut(s) | 201 |
| CfoI | GCGC | 1 cut(s) | 295 |
| CviAII | CATG | 4 cut(s) | 112, 139, 282, 296 |
| CviJI | RGCY | 7 cut(s) | 152, 165, 201, 254, 262, 277, 306 |
| CviKI_1 | RGCY | 7 cut(s) | 152, 165, 201, 254, 262, 277, 306 |
| DdeI | CTNAG | 1 cut(s) | 41 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 336 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 336 |
| Eam1104I | CTCTTC | 1 cut(s) | 48 |
| EarI | CTCTTC | 1 cut(s) | 48 |
| Eco31I | GGTCTC | 1 cut(s) | 310 |
| Eco57I | CTGAAG | 2 cut(s) | 9, 178 |
| Eco88I | CYCGRG | 1 cut(s) | 84 |
| EcoT22I | ATGCAT | 1 cut(s) | 107 |
| FaeI | CATG | 4 cut(s) | 115, 142, 285, 299 |
| FaiI | YATR | 7 cut(s) | 48, 113, 140, 168, 170, 283, 297 |
| FatI | CATG | 4 cut(s) | 111, 138, 281, 295 |
| FspBI | CTAG | 1 cut(s) | 266 |
| GlaI | GCGC | 1 cut(s) | 294 |
| HaeIII | GGCC | 1 cut(s) | 201 |
| HapII | CCGG | 1 cut(s) | 345 |
| HhaI | GCGC | 1 cut(s) | 295 |
| Hin1II | CATG | 4 cut(s) | 115, 142, 285, 299 |
| Hin6I | GCGC | 1 cut(s) | 293 |
| HinP1I | GCGC | 1 cut(s) | 293 |
| HpaII | CCGG | 1 cut(s) | 345 |
| HphI | GGTGA | 2 cut(s) | 184, 269 |
| Hpy188I | TCNGA | 3 cut(s) | 44, 132, 197 |
| Hpy188III | TCNNGA | 2 cut(s) | 86, 266 |
| HpyAV | CCTTC | 1 cut(s) | 202 |
| HpyCH4III | ACNGT | 2 cut(s) | 189, 333 |
| HpyCH4IV | ACGT | 1 cut(s) | 74 |
| HpyCH4V | TGCA | 2 cut(s) | 105, 311 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 268 |
| HpyF3I | CTNAG | 1 cut(s) | 41 |
| HpySE526I | ACGT | 1 cut(s) | 74 |
| Hsp92II | CATG | 4 cut(s) | 115, 142, 285, 299 |
| HspAI | GCGC | 1 cut(s) | 293 |
| LpnPI | CCDG | 4 cut(s) | 12, 120, 190, 240 |
| LweI | GCATC | 1 cut(s) | 114 |
| MaeI | CTAG | 1 cut(s) | 266 |
| MaeII | ACGT | 1 cut(s) | 74 |
| MaeIII | GTNAC | 1 cut(s) | 212 |
| MboII | GAAGA | 4 cut(s) | 43, 65, 110, 236 |
| MluCI | AATT | 1 cut(s) | 227 |
| MnlI | CCTC | 4 cut(s) | 90, 93, 191, 283 |
| Mph1103I | ATGCAT | 1 cut(s) | 107 |
| MslI | CAYNNNNRTG | 1 cut(s) | 110 |
| MspI | CCGG | 1 cut(s) | 345 |
| MspR9I | CCNGG | 1 cut(s) | 345 |
| Mva1269I | GAATGC | 2 cut(s) | 40, 107 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 268 |
| NciI | CCSGG | 1 cut(s) | 345 |
| NlaIII | CATG | 4 cut(s) | 115, 142, 285, 299 |
| NmuCI | GTSAC | 1 cut(s) | 212 |
| NsiI | ATGCAT | 1 cut(s) | 107 |
| NspI | RCATGY | 2 cut(s) | 115, 285 |
| PciI | ACATGT | 1 cut(s) | 281 |
| PctI | GAATGC | 2 cut(s) | 40, 107 |
| PscI | ACATGT | 1 cut(s) | 281 |
| RseI | CAYNNNNRTG | 1 cut(s) | 110 |
| ScrFI | CCNGG | 1 cut(s) | 345 |
| SetI | ASST | 4 cut(s) | 77, 264, 279, 322 |
| SfaNI | GCATC | 1 cut(s) | 114 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 110 |
| Sse9I | AATT | 1 cut(s) | 227 |
| SspMI | CTAG | 1 cut(s) | 266 |
| StyD4I | CCNGG | 1 cut(s) | 343 |
| TaaI | ACNGT | 2 cut(s) | 189, 333 |
| TaiI | ACGT | 1 cut(s) | 77 |
| TasI | AATT | 1 cut(s) | 227 |
| TseFI | GTSAC | 1 cut(s) | 212 |
| Tsp45I | GTSAC | 1 cut(s) | 212 |
| TspDTI | ATGAA | 2 cut(s) | 155, 248 |
| XbaI | TCTAGA | 1 cut(s) | 265 |
| XceI | RCATGY | 2 cut(s) | 115, 285 |
| XspI | CTAG | 1 cut(s) | 266 |
| Zsp2I | ATGCAT | 1 cut(s) | 107 |