DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0042251 RchiOBHm_Chr5g0042301 |
| rosa_multiflora | Rmu_sc0001715.1_g000010 Rmu_sc0001715.1_g000024 Rmu_sc0034236.1_g000001 |
| rosa_samantha | Rh5AG283700 Rh5BG289700 Rh5CG321000 Rh5CG321100 Rh5CG321700 Rh5DG299000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 166 |
| AciI | CCGC | 2 cut(s) | 247, 272 |
| AfaI | GTAC | 1 cut(s) | 143 |
| AgsI | TTSAA | 2 cut(s) | 70, 106 |
| AjnI | CCWGG | 1 cut(s) | 208 |
| AluBI | AGCT | 1 cut(s) | 62 |
| AluI | AGCT | 1 cut(s) | 62 |
| AoxI | GGCC | 1 cut(s) | 115 |
| AsuHPI | GGTGA | 2 cut(s) | 119, 244 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 134, 166 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 78, 112 |
| BciT130I | CCWGG | 1 cut(s) | 210 |
| BfaI | CTAG | 1 cut(s) | 39 |
| Bme1390I | CCNGG | 1 cut(s) | 210 |
| BmrFI | CCNGG | 1 cut(s) | 210 |
| BmsI | GCATC | 1 cut(s) | 98 |
| BsaJI | CCNNGG | 1 cut(s) | 209 |
| Bse1I | ACTGG | 1 cut(s) | 109 |
| BseBI | CCWGG | 1 cut(s) | 210 |
| BseDI | CCNNGG | 1 cut(s) | 209 |
| BseNI | ACTGG | 1 cut(s) | 109 |
| BshFI | GGCC | 1 cut(s) | 117 |
| BsmI | GAATGC | 1 cut(s) | 241 |
| BsnI | GGCC | 1 cut(s) | 117 |
| Bsp143I | GATC | 1 cut(s) | 49 |
| BspACI | CCGC | 2 cut(s) | 247, 272 |
| BspANI | GGCC | 1 cut(s) | 117 |
| BsrI | ACTGG | 1 cut(s) | 109 |
| BssECI | CCNNGG | 1 cut(s) | 209 |
| BssMI | GATC | 1 cut(s) | 49 |
| BssNAI | GTATAC | 1 cut(s) | 167 |
| Bst1107I | GTATAC | 1 cut(s) | 167 |
| Bst2UI | CCWGG | 1 cut(s) | 210 |
| BstKTI | GATC | 1 cut(s) | 52 |
| BstMBI | GATC | 1 cut(s) | 49 |
| BstNI | CCWGG | 1 cut(s) | 210 |
| BstSCI | CCNGG | 1 cut(s) | 208 |
| BstZ17I | GTATAC | 1 cut(s) | 167 |
| BsuRI | GGCC | 1 cut(s) | 117 |
| BtsIMutI | CAGTG | 1 cut(s) | 116 |
| Csp6I | GTAC | 1 cut(s) | 142 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 94, 129 |
| CviAII | CATG | 1 cut(s) | 47 |
| CviJI | RGCY | 3 cut(s) | 62, 117, 208 |
| CviKI_1 | RGCY | 3 cut(s) | 62, 117, 208 |
| CviQI | GTAC | 1 cut(s) | 142 |
| DpnI | GATC | 1 cut(s) | 51 |
| DpnII | GATC | 1 cut(s) | 49 |
| EcoRII | CCWGG | 1 cut(s) | 208 |
| FaeI | CATG | 1 cut(s) | 50 |
| FaiI | YATR | 6 cut(s) | 44, 48, 167, 200, 216, 252 |
| FatI | CATG | 1 cut(s) | 46 |
| FblI | GTMKAC | 1 cut(s) | 166 |
| FspBI | CTAG | 1 cut(s) | 39 |
| HaeIII | GGCC | 1 cut(s) | 117 |
| Hin1II | CATG | 1 cut(s) | 50 |
| HindIII | AAGCTT | 1 cut(s) | 60 |
| HinfI | GANTC | 3 cut(s) | 23, 32, 174 |
| HphI | GGTGA | 2 cut(s) | 119, 244 |
| Hpy166II | GTNNAC | 1 cut(s) | 167 |
| Hpy8I | GTNNAC | 1 cut(s) | 167 |
| HpyCH4V | TGCA | 1 cut(s) | 239 |
| Hsp92II | CATG | 1 cut(s) | 50 |
| Kzo9I | GATC | 1 cut(s) | 49 |
| LpnPI | CCDG | 5 cut(s) | 38, 122, 195, 222, 247 |
| LweI | GCATC | 1 cut(s) | 98 |
| MaeI | CTAG | 1 cut(s) | 39 |
| MaeIII | GTNAC | 1 cut(s) | 125 |
| MalI | GATC | 1 cut(s) | 51 |
| MboI | GATC | 1 cut(s) | 49 |
| MboII | GAAGA | 1 cut(s) | 94 |
| MluCI | AATT | 2 cut(s) | 70, 93 |
| MlyI | GAGTC | 1 cut(s) | 183 |
| MnlI | CCTC | 2 cut(s) | 79, 128 |
| MseI | TTAA | 1 cut(s) | 156 |
| MspR9I | CCNGG | 1 cut(s) | 210 |
| Mva1269I | GAATGC | 1 cut(s) | 241 |
| MvaI | CCWGG | 1 cut(s) | 210 |
| NdeII | GATC | 1 cut(s) | 49 |
| NlaIII | CATG | 1 cut(s) | 50 |
| NmuCI | GTSAC | 1 cut(s) | 125 |
| PctI | GAATGC | 1 cut(s) | 241 |
| PfeI | GAWTC | 2 cut(s) | 23, 32 |
| PleI | GAGTC | 1 cut(s) | 182 |
| PpsI | GAGTC | 1 cut(s) | 182 |
| Psp6I | CCWGG | 1 cut(s) | 208 |
| PspGI | CCWGG | 1 cut(s) | 208 |
| RsaI | GTAC | 1 cut(s) | 143 |
| RsaNI | GTAC | 1 cut(s) | 142 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| Sau3AI | GATC | 1 cut(s) | 49 |
| SchI | GAGTC | 1 cut(s) | 183 |
| ScrFI | CCNGG | 1 cut(s) | 210 |
| SetI | ASST | 3 cut(s) | 64, 234, 266 |
| SfaNI | GCATC | 1 cut(s) | 98 |
| Sse9I | AATT | 2 cut(s) | 70, 93 |
| SsiI | CCGC | 2 cut(s) | 247, 272 |
| SspMI | CTAG | 1 cut(s) | 39 |
| StyD4I | CCNGG | 1 cut(s) | 208 |
| TaqI | TCGA | 1 cut(s) | 35 |
| TasI | AATT | 2 cut(s) | 70, 93 |
| TfiI | GAWTC | 2 cut(s) | 23, 32 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TscAI | CASTG | 1 cut(s) | 116 |
| TseFI | GTSAC | 1 cut(s) | 125 |
| Tsp45I | GTSAC | 1 cut(s) | 125 |
| TspDTI | ATGAA | 2 cut(s) | 36, 142 |
| TspGWI | ACGGA | 1 cut(s) | 247 |
| TspRI | CASTG | 1 cut(s) | 116 |
| XmiI | GTMKAC | 1 cut(s) | 166 |
| XspI | CTAG | 1 cut(s) | 39 |