RNA polymerase II C-terminal domain phosphatase-like 4
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0070271 RchiOBHm_Chr5g0070281 |
| rosa_laevigata | RLG00000036122 |
| rosa_multiflora | Rmu_sc0009590.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00010870 |
| rosa_rugosa | Rorug05G0404700 Rorug05G0404800 |
| rosa_samantha | Rh5AG460000 Rh5BG478600 Rh5CG502800 Rh5DG490500 Rh5DG490600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 116, 283 |
| AclWI | GGATC | 1 cut(s) | 56 |
| AcuI | CTGAAG | 1 cut(s) | 210 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 319 |
| AflIII | ACRYGT | 1 cut(s) | 76 |
| AjnI | CCWGG | 1 cut(s) | 268 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 116, 148 |
| AluBI | AGCT | 1 cut(s) | 38 |
| AluI | AGCT | 1 cut(s) | 38 |
| AlwI | GGATC | 1 cut(s) | 56 |
| AoxI | GGCC | 2 cut(s) | 107, 346 |
| AspS9I | GGNCC | 1 cut(s) | 139 |
| AsuC2I | CCSGG | 1 cut(s) | 320 |
| AsuHPI | GGTGA | 1 cut(s) | 271 |
| AvaII | GGWCC | 1 cut(s) | 139 |
| BbsI | GAAGAC | 1 cut(s) | 198 |
| BccI | CCATC | 1 cut(s) | 73 |
| BciT130I | CCWGG | 1 cut(s) | 270 |
| BcnI | CCSGG | 1 cut(s) | 320 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 354 |
| Bme1390I | CCNGG | 2 cut(s) | 270, 320 |
| Bme18I | GGWCC | 1 cut(s) | 139 |
| BmgT120I | GGNCC | 1 cut(s) | 139 |
| BmrFI | CCNGG | 2 cut(s) | 270, 320 |
| BmsI | GCATC | 1 cut(s) | 88 |
| BpiI | GAAGAC | 1 cut(s) | 198 |
| BpuMI | CCSGG | 1 cut(s) | 320 |
| BsaJI | CCNNGG | 1 cut(s) | 268 |
| BsaWI | WCCGGW | 1 cut(s) | 147 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 319 |
| BseBI | CCWGG | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 268 |
| BseGI | GGATG | 1 cut(s) | 64 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 319 |
| BshFI | GGCC | 2 cut(s) | 109, 348 |
| BsiSI | CCGG | 2 cut(s) | 148, 320 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 319 |
| BsnI | GGCC | 2 cut(s) | 109, 348 |
| Bsp143I | GATC | 2 cut(s) | 61, 290 |
| BspACI | CCGC | 2 cut(s) | 116, 283 |
| BspANI | GGCC | 2 cut(s) | 109, 348 |
| BspPI | GGATC | 1 cut(s) | 56 |
| BssECI | CCNNGG | 1 cut(s) | 268 |
| BssMI | GATC | 2 cut(s) | 61, 290 |
| Bst2UI | CCWGG | 1 cut(s) | 270 |
| Bst4CI | ACNGT | 1 cut(s) | 378 |
| Bst6I | CTCTTC | 2 cut(s) | 356, 362 |
| BstC8I | GCNNGC | 1 cut(s) | 250 |
| BstEII | GGTNACC | 1 cut(s) | 322 |
| BstF5I | GGATG | 1 cut(s) | 64 |
| BstKTI | GATC | 2 cut(s) | 64, 293 |
| BstMBI | GATC | 2 cut(s) | 61, 290 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 354 |
| BstNI | CCWGG | 1 cut(s) | 270 |
| BstNSI | RCATGY | 1 cut(s) | 80 |
| BstPI | GGTNACC | 1 cut(s) | 322 |
| BstSCI | CCNGG | 2 cut(s) | 268, 318 |
| BstV2I | GAAGAC | 1 cut(s) | 198 |
| BsuRI | GGCC | 2 cut(s) | 109, 348 |
| BtsCI | GGATG | 1 cut(s) | 64 |
| BtsIMutI | CAGTG | 2 cut(s) | 14, 75 |
| Cac8I | GCNNGC | 1 cut(s) | 250 |
| Cfr13I | GGNCC | 1 cut(s) | 139 |
| CseI | GACGC | 1 cut(s) | 97 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 99, 134, 295, 330 |
| CviAII | CATG | 1 cut(s) | 77 |
| CviJI | RGCY | 5 cut(s) | 38, 109, 252, 335, 348 |
| CviKI_1 | RGCY | 5 cut(s) | 38, 109, 252, 335, 348 |
| DpnI | GATC | 2 cut(s) | 63, 292 |
| DpnII | GATC | 2 cut(s) | 61, 290 |
| Eam1104I | CTCTTC | 2 cut(s) | 356, 362 |
| EarI | CTCTTC | 2 cut(s) | 356, 362 |
| Eco47I | GGWCC | 1 cut(s) | 139 |
| Eco57I | CTGAAG | 1 cut(s) | 210 |
| Eco91I | GGTNACC | 1 cut(s) | 322 |
| EcoO65I | GGTNACC | 1 cut(s) | 322 |
| EcoRII | CCWGG | 1 cut(s) | 268 |
| FaeI | CATG | 1 cut(s) | 80 |
| FaiI | YATR | 3 cut(s) | 20, 78, 173 |
| FatI | CATG | 1 cut(s) | 76 |
| FauI | CCCGC | 1 cut(s) | 290 |
| FokI | GGATG | 1 cut(s) | 71 |
| HaeIII | GGCC | 2 cut(s) | 109, 348 |
| HapII | CCGG | 2 cut(s) | 148, 320 |
| HgaI | GACGC | 1 cut(s) | 97 |
| Hin1II | CATG | 1 cut(s) | 80 |
| HinfI | GANTC | 3 cut(s) | 4, 161, 273 |
| HpaII | CCGG | 2 cut(s) | 148, 320 |
| HphI | GGTGA | 1 cut(s) | 271 |
| Hpy188I | TCNGA | 1 cut(s) | 290 |
| Hpy99I | CGWCG | 1 cut(s) | 91 |
| HpyAV | CCTTC | 2 cut(s) | 99, 311 |
| HpyCH4III | ACNGT | 1 cut(s) | 378 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 354 |
| Hsp92II | CATG | 1 cut(s) | 80 |
| Kzo9I | GATC | 2 cut(s) | 61, 290 |
| LmnI | GCTCC | 1 cut(s) | 35 |
| LweI | GCATC | 1 cut(s) | 88 |
| MaeIII | GTNAC | 3 cut(s) | 70, 322, 372 |
| MalI | GATC | 2 cut(s) | 63, 292 |
| MboI | GATC | 2 cut(s) | 61, 290 |
| MboII | GAAGA | 5 cut(s) | 170, 203, 268, 373, 379 |
| MluCI | AATT | 3 cut(s) | 213, 228, 258 |
| MmeI | TCCRAC | 1 cut(s) | 259 |
| MnlI | CCTC | 6 cut(s) | 115, 211, 275, 296, 357, 363 |
| MseI | TTAA | 1 cut(s) | 48 |
| MspI | CCGG | 2 cut(s) | 148, 320 |
| MspR9I | CCNGG | 2 cut(s) | 270, 320 |
| MvaI | CCWGG | 1 cut(s) | 270 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 354 |
| NciI | CCSGG | 1 cut(s) | 320 |
| NdeII | GATC | 2 cut(s) | 61, 290 |
| NlaIII | CATG | 1 cut(s) | 80 |
| NmuCI | GTSAC | 1 cut(s) | 70 |
| NspI | RCATGY | 1 cut(s) | 80 |
| PciI | ACATGT | 1 cut(s) | 76 |
| PfeI | GAWTC | 3 cut(s) | 4, 161, 273 |
| PscI | ACATGT | 1 cut(s) | 76 |
| Psp6I | CCWGG | 1 cut(s) | 268 |
| PspEI | GGTNACC | 1 cut(s) | 322 |
| PspGI | CCWGG | 1 cut(s) | 268 |
| PspPI | GGNCC | 1 cut(s) | 139 |
| SaqAI | TTAA | 1 cut(s) | 48 |
| Sau3AI | GATC | 2 cut(s) | 61, 290 |
| Sau96I | GGNCC | 1 cut(s) | 139 |
| ScrFI | CCNGG | 2 cut(s) | 270, 320 |
| SetI | ASST | 6 cut(s) | 40, 190, 222, 241, 329, 374 |
| SfaNI | GCATC | 1 cut(s) | 88 |
| SinI | GGWCC | 1 cut(s) | 139 |
| Sse9I | AATT | 3 cut(s) | 213, 228, 258 |
| SsiI | CCGC | 2 cut(s) | 116, 283 |
| StyD4I | CCNGG | 2 cut(s) | 268, 318 |
| TaaI | ACNGT | 1 cut(s) | 378 |
| TasI | AATT | 3 cut(s) | 213, 228, 258 |
| TfiI | GAWTC | 3 cut(s) | 4, 161, 273 |
| Tru1I | TTAA | 1 cut(s) | 48 |
| Tru9I | TTAA | 1 cut(s) | 48 |
| TscAI | CASTG | 2 cut(s) | 14, 75 |
| TseFI | GTSAC | 1 cut(s) | 70 |
| Tsp45I | GTSAC | 1 cut(s) | 70 |
| TspRI | CASTG | 2 cut(s) | 14, 75 |
| VpaK11BI | GGWCC | 1 cut(s) | 139 |
| XceI | RCATGY | 1 cut(s) | 80 |