Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0017814

Physical Location & Seq

Genomic Coordinates Reverse (-)

78841308 .. 78844567

Gene Structure 3260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG460000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGAGTCGGGAGAGCAGTAATGATTCACCTTCCGGCAGTAGTAAGGCACTATATTCTTGTTATGATGATGAGAGTGAGATTGGAATTAGTGATAGGAGAAAAAGGCATAAAGTAGAGAATAGTCATGGGTCGTCCACTACAAAGAAGGAGATCAAGGATTTTCCAAATCCTCAGAGTCATTATTATTCCAATTCTAGTGTGGGATTTGATTATATACGCGATAGAGTAAGAGTAAGGAATCACAAGGATGAAATTGACCGTCTACGCAAGGCAAACACTAACATCTTATTGTCCTGCCACAAAAAACTCCACTTGGTTATTGACCTAGATCACACCCTGCTAAATACCACCAGTCTCTCCGATATGTCGCCGGAAGAAGAATATTTGAAGACCCAAACAGACTATTGTTTGCAGAATATCGATGCTTTCAAATACGAGTTACCTCCCAAACATAAGATGACCAAGCTGAGGCCCTTTGTCAGAACCTTTCTAAAGGAAGCCAGCAACATGTTTGATATGTACATATACACAGCTGGTTCACGTCCTTACGCATTGAAAATGGTTGAGCTCCTCGGAAAAGACTACTTCGGGTCTAGGGTTATATCTGGTGATGATTTTAATGATAGCTCCAAAATGAAGTGTCTAGAACTTATGCATGGCAAAGAGTCTGCTGTTTTGATCCTTGATGATAACATGGATGCATGGACAAGGGAAAACCAGAGCAACCTGATACTAATGCGAAAGTATCTATTCTTTAAATCCAAATCGGCCCCCTATAAACGAAATTTCAAGACTCTTTCTGAATTGAAAACTGATGAGATTGATGAGTTGTCTCAACAACCCTATCTTGCAACTATTCTCCAACTTCTGAAGCAAATCCACAGCATGTTCTTCGATGATGAAGCGACCGTTGGGGACAATCTTATCAACAGAGATGTGAGGAAGGTGTTGGAAACTCTTAGGAAGAATGTCTTGAAAGGGTGTAAGATTGTTTTCCCCCCTCGTCGGCCCGATATGATTCAGTGGTGGAATATGGCACAACGTTTGGGAGCTACTTGTGTTAAGAAAGTGGATGATCCATCAGTGACACATGTGGTTGCGACGCAAACTGATGCTGGAAGGCCAATGGCGGTGGAGGACAACAAGTTCTTGGTCCATTTCCGGTGGATAGAAGAATCAAACTTTATGTGGCAAAAGCAACCTGAAGACAAGTTTCCTGTTCCTGTAATTGAGGTTGGCAAAATTGTCCAACCTGAAAGTGCCAGCCCTGAAATTACCAGCCCCGAAATTACCCTCCCTGGATTCTTCACCGGCCTCCGATCAGTATTCGTTCCCTCATTCCTTGACCCGGTTACCTTGTTGGCTACAATAAGTGGCCTGATTGGCAGGAAGAGGAAGAGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

468

Amino Acids

53.98

Weight (kDa)

8.74

Isoelectric Point (pI)

62.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	104 - 269	1.7e-21	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017814)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0070271 RchiOBHm_Chr5g0070281
rosa_laevigata	RLG00000036122
rosa_multiflora	Rmu_sc0009590.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010870
rosa_rugosa	Rorug05G0404700 Rorug05G0404800
rosa_samantha	Rh5AG460000 Rh5BG478600 Rh5CG502800 Rh5DG490500 Rh5DG490600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	262
AccII	CGCG	1 cut(s)	219
AciI	CCGC	1 cut(s)	1130
AclI	AACGTT	1 cut(s)	1042
AclWI	GGATC	2 cut(s)	673, 1070
AcsI	RAATTY	1 cut(s)	784
AcuI	CTGAAG	2 cut(s)	890, 1224
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	3 cut(s)	468, 1005, 1348
AflIII	ACRYGT	2 cut(s)	507, 1090
AgsI	TTSAA	6 cut(s)	388, 430, 556, 790, 808, 976
AjiI	CACGTC	1 cut(s)	542
AjnI	CCWGG	1 cut(s)	1297
AjuI	GAANNNNNNNTTGG	2 cut(s)	894, 926
AloI	GAACNNNNNNTCC	2 cut(s)	1130, 1162
AluBI	AGCT	5 cut(s)	466, 533, 568, 627, 1052
AluI	AGCT	5 cut(s)	466, 533, 568, 627, 1052
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	2 cut(s)	359, 837
AlwI	GGATC	2 cut(s)	673, 1070
AoxI	GGCC	6 cut(s)	470, 768, 1007, 1121, 1312, 1375
ApoI	RAATTY	1 cut(s)	784
AspS9I	GGNCC	4 cut(s)	471, 769, 1008, 1153
AsuC2I	CCSGG	1 cut(s)	1349
AsuHPI	GGTGA	3 cut(s)	18, 620, 1300
AvaII	GGWCC	1 cut(s)	1153
BanII	GRGCYC	1 cut(s)	570
BbsI	GAAGAC	2 cut(s)	395, 1212
Bbv12I	GWGCWC	1 cut(s)	570
BbvCI	CCTCAGC	1 cut(s)	467
BccI	CCATC	1 cut(s)	1087
BcgI	CGANNNNNNTGC	2 cut(s)	874, 908
BciT130I	CCWGG	1 cut(s)	1299
BcnI	CCSGG	1 cut(s)	1349
BcoDI	GTCTC	2 cut(s)	359, 837
BfaI	CTAG	4 cut(s)	195, 326, 594, 644
BglI	GCCNNNNNGGC	1 cut(s)	1383
Bme1390I	CCNGG	2 cut(s)	1299, 1349
Bme18I	GGWCC	1 cut(s)	1153
BmgBI	CACGTC	1 cut(s)	542
BmgT120I	GGNCC	4 cut(s)	471, 769, 1008, 1153
BmiI	GGNNCC	1 cut(s)	771
BmrFI	CCNGG	2 cut(s)	1299, 1349
BmsI	GCATC	3 cut(s)	412, 688, 1102
BpiI	GAAGAC	2 cut(s)	395, 1212
Bpu10I	CCTNAGC	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	1349
Bsa29I	ATCGAT	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	571, 1297
BsaWI	WCCGGW	1 cut(s)	1161
Bsc4I	CCNNNNNNNGG	3 cut(s)	468, 1005, 1348
Bse118I	RCCGGY	1 cut(s)	1310
Bse1I	ACTGG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	1299
BseCI	ATCGAT	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	571, 1297
BseGI	GGATG	3 cut(s)	253, 703, 1078
BseLI	CCNNNNNNNGG	3 cut(s)	468, 1005, 1348
BseMII	CTCAG	2 cut(s)	185, 458
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	560
Bsh1236I	CGCG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	909
BshFI	GGCC	6 cut(s)	472, 770, 1009, 1123, 1314, 1377
BshVI	ATCGAT	1 cut(s)	420
BsiEI	CGRYCG	1 cut(s)	909
BsiHKAI	GWGCWC	1 cut(s)	570
BsiSI	CCGG	5 cut(s)	33, 371, 1162, 1311, 1349
BslFI	GGGAC	1 cut(s)	929
BslI	CCNNNNNNNGG	3 cut(s)	468, 1005, 1348
BsmAI	GTCTC	2 cut(s)	359, 837
BsmFI	GGGAC	1 cut(s)	929
BsnI	GGCC	6 cut(s)	472, 770, 1009, 1123, 1314, 1377
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	5 cut(s)	150, 328, 678, 1075, 1319
BspACI	CCGC	1 cut(s)	1130
BspANI	GGCC	6 cut(s)	472, 770, 1009, 1123, 1314, 1377
BspCNI	CTCAG	2 cut(s)	184, 459
BspDI	ATCGAT	1 cut(s)	420
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	771
BspPI	GGATC	2 cut(s)	673, 1070
BsrFI	RCCGGY	1 cut(s)	1310
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	1310
BssECI	CCNNGG	2 cut(s)	571, 1297
BssMI	GATC	5 cut(s)	150, 328, 678, 1075, 1319
Bst2UI	CCWGG	1 cut(s)	1299
Bst4CI	ACNGT	2 cut(s)	260, 910
Bst6I	CTCTTC	2 cut(s)	1385, 1391
BstAUI	TGTACA	1 cut(s)	519
BstC8I	GCNNGC	2 cut(s)	502, 1264
BstDEI	CTNAG	3 cut(s)	171, 467, 959
BstEII	GGTNACC	1 cut(s)	1351
BstF5I	GGATG	3 cut(s)	253, 703, 1078
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	5 cut(s)	153, 331, 681, 1078, 1322
BstMAI	GTCTC	2 cut(s)	359, 837
BstMBI	GATC	5 cut(s)	150, 328, 678, 1075, 1319
BstMCI	CGRYCG	1 cut(s)	909
BstMWI	GCNNNNNNNGC	1 cut(s)	1383
BstNI	CCWGG	1 cut(s)	1299
BstNSI	RCATGY	3 cut(s)	511, 889, 1094
BstPI	GGTNACC	1 cut(s)	1351
BstSCI	CCNGG	2 cut(s)	1297, 1347
BstUI	CGCG	1 cut(s)	219
BstV2I	GAAGAC	2 cut(s)	395, 1212
Bsu15I	ATCGAT	1 cut(s)	420
BsuRI	GGCC	6 cut(s)	472, 770, 1009, 1123, 1314, 1377
BsuTUI	ATCGAT	1 cut(s)	420
BtrI	CACGTC	1 cut(s)	542
BtsCI	GGATG	3 cut(s)	253, 703, 1078
BtsIMutI	CAGTG	2 cut(s)	1028, 1089
Cac8I	GCNNGC	2 cut(s)	502, 1264
Cfr10I	RCCGGY	1 cut(s)	1310
Cfr13I	GGNCC	4 cut(s)	471, 769, 1008, 1153
ClaI	ATCGAT	1 cut(s)	420
CseI	GACGC	1 cut(s)	1111
Csp6I	GTAC	1 cut(s)	520
CspCI	CAANNNNNGTGG	2 cut(s)	1113, 1148
CviAII	CATG	7 cut(s)	125, 508, 656, 694, 702, 886, 1091
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	3 cut(s)	171, 467, 959
DpnI	GATC	5 cut(s)	152, 330, 680, 1077, 1321
DpnII	GATC	5 cut(s)	150, 328, 678, 1075, 1319
DraI	TTTAAA	1 cut(s)	757
Eam1104I	CTCTTC	2 cut(s)	1385, 1391
EarI	CTCTTC	2 cut(s)	1385, 1391
Ecl136II	GAGCTC	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	570
Eco47I	GGWCC	1 cut(s)	1153
Eco53kI	GAGCTC	1 cut(s)	568
Eco57I	CTGAAG	2 cut(s)	890, 1224
Eco91I	GGTNACC	1 cut(s)	1351
EcoICRI	GAGCTC	1 cut(s)	568
EcoO109I	RGGNCCY	1 cut(s)	471
EcoO65I	GGTNACC	1 cut(s)	1351
EcoRII	CCWGG	1 cut(s)	1297
EcoT22I	ATGCAT	2 cut(s)	657, 703
EcoT38I	GRGCYC	1 cut(s)	570
FaeI	CATG	7 cut(s)	128, 511, 659, 697, 705, 889, 1094
FalI	AAGNNNNNCTT	2 cut(s)	956, 988
FaqI	GGGAC	1 cut(s)	929
FatI	CATG	7 cut(s)	124, 507, 655, 693, 701, 885, 1090
FblI	GTMKAC	1 cut(s)	262
FokI	GGATG	3 cut(s)	260, 710, 1085
FriOI	GRGCYC	1 cut(s)	570
FspBI	CTAG	4 cut(s)	195, 326, 594, 644
HaeIII	GGCC	6 cut(s)	472, 770, 1009, 1123, 1314, 1377
HapII	CCGG	5 cut(s)	33, 371, 1162, 1311, 1349
HgaI	GACGC	1 cut(s)	1111
Hin1II	CATG	7 cut(s)	128, 511, 659, 697, 705, 889, 1094
HinfI	GANTC	9 cut(s)	4, 23, 175, 238, 665, 793, 1018, 1175, 1302
HpaII	CCGG	5 cut(s)	33, 371, 1162, 1311, 1349
HphI	GGTGA	3 cut(s)	18, 620, 1300
Hpy166II	GTNNAC	3 cut(s)	135, 263, 539
Hpy188I	TCNGA	7 cut(s)	174, 361, 482, 575, 802, 870, 1319
Hpy188III	TCNNGA	4 cut(s)	8, 644, 790, 973
Hpy8I	GTNNAC	3 cut(s)	135, 263, 539
Hpy99I	CGWCG	2 cut(s)	1008, 1105
HpyAV	CCTTC	4 cut(s)	39, 139, 937, 1113
HpyCH4III	ACNGT	2 cut(s)	260, 910
HpyCH4IV	ACGT	2 cut(s)	541, 1042
HpyCH4V	TGCA	4 cut(s)	412, 655, 701, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1383
HpyF3I	CTNAG	3 cut(s)	171, 467, 959
HpySE526I	ACGT	2 cut(s)	541, 1042
Hsp92II	CATG	7 cut(s)	128, 511, 659, 697, 705, 889, 1094
Kzo9I	GATC	5 cut(s)	150, 328, 678, 1075, 1319
LmnI	GCTCC	3 cut(s)	573, 632, 1049
LweI	GCATC	3 cut(s)	412, 688, 1102
MaeI	CTAG	4 cut(s)	195, 326, 594, 644
MaeII	ACGT	2 cut(s)	541, 1042
MaeIII	GTNAC	3 cut(s)	438, 1084, 1351
MalI	GATC	5 cut(s)	152, 330, 680, 1077, 1321
MboI	GATC	5 cut(s)	150, 328, 678, 1075, 1319
MboII	GAAGA	9 cut(s)	386, 389, 400, 883, 976, 1184, 1217, 1297, 1402
MhlI	GDGCHC	1 cut(s)	570
MluCI	AATT	9 cut(s)	84, 190, 252, 784, 803, 1227, 1242, 1272, 1287
MlyI	GAGTC	4 cut(s)	13, 184, 674, 787
MmeI	TCCRAC	3 cut(s)	886, 930, 1273
Mph1103I	ATGCAT	2 cut(s)	657, 703
MseI	TTAA	3 cut(s)	618, 756, 1062
MslI	CAYNNNNRTG	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	5 cut(s)	33, 371, 1162, 1311, 1349
MspR9I	CCNGG	2 cut(s)	1299, 1349
MvaI	CCWGG	1 cut(s)	1299
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	1383
NciI	CCSGG	1 cut(s)	1349
NdeII	GATC	5 cut(s)	150, 328, 678, 1075, 1319
NlaIII	CATG	7 cut(s)	128, 511, 659, 697, 705, 889, 1094
NlaIV	GGNNCC	1 cut(s)	771
NmuCI	GTSAC	1 cut(s)	1084
NsiI	ATGCAT	2 cut(s)	657, 703
NspI	RCATGY	3 cut(s)	511, 889, 1094
PciI	ACATGT	2 cut(s)	507, 1090
PfeI	GAWTC	5 cut(s)	23, 238, 1018, 1175, 1302
PleI	GAGTC	4 cut(s)	12, 183, 673, 787
PpsI	GAGTC	4 cut(s)	12, 183, 673, 787
PscI	ACATGT	2 cut(s)	507, 1090
Psp124BI	GAGCTC	1 cut(s)	570
Psp1406I	AACGTT	1 cut(s)	1042
Psp6I	CCWGG	1 cut(s)	1297
PspEI	GGTNACC	1 cut(s)	1351
PspGI	CCWGG	1 cut(s)	1297
PspN4I	GGNNCC	1 cut(s)	771
PspPI	GGNCC	4 cut(s)	471, 769, 1008, 1153
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
RseI	CAYNNNNRTG	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	570
SaqAI	TTAA	3 cut(s)	618, 756, 1062
Sau3AI	GATC	5 cut(s)	150, 328, 678, 1075, 1319
Sau96I	GGNCC	4 cut(s)	471, 769, 1008, 1153
SchI	GAGTC	4 cut(s)	13, 184, 674, 787
ScrFI	CCNGG	2 cut(s)	1299, 1349
SduI	GDGCHC	1 cut(s)	570
SfaNI	GCATC	3 cut(s)	412, 688, 1102
SinI	GGWCC	1 cut(s)	1153
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	9 cut(s)	84, 190, 252, 784, 803, 1227, 1242, 1272, 1287
SsiI	CCGC	1 cut(s)	1130
SspI	AATATT	1 cut(s)	383
SspMI	CTAG	4 cut(s)	195, 326, 594, 644
SstI	GAGCTC	1 cut(s)	570
StyD4I	CCNGG	2 cut(s)	1297, 1347
TaaI	ACNGT	2 cut(s)	260, 910
TaiI	ACGT	2 cut(s)	544, 1045
TaqI	TCGA	2 cut(s)	420, 894
TasI	AATT	9 cut(s)	84, 190, 252, 784, 803, 1227, 1242, 1272, 1287
TatI	WGTACW	1 cut(s)	519
TfiI	GAWTC	5 cut(s)	23, 238, 1018, 1175, 1302
Tru1I	TTAA	3 cut(s)	618, 756, 1062
Tru9I	TTAA	3 cut(s)	618, 756, 1062
TscAI	CASTG	2 cut(s)	1028, 1089
TseFI	GTSAC	1 cut(s)	1084
Tsp45I	GTSAC	1 cut(s)	1084
TspDTI	ATGAA	3 cut(s)	264, 650, 915
TspRI	CASTG	2 cut(s)	1028, 1089
VpaK11BI	GGWCC	1 cut(s)	1153
XapI	RAATTY	1 cut(s)	784
XbaI	TCTAGA	1 cut(s)	643
XceI	RCATGY	3 cut(s)	511, 889, 1094
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	262
XspI	CTAG	4 cut(s)	195, 326, 594, 644
Zsp2I	ATGCAT	2 cut(s)	657, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.