Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017814

Physical Location & Seq

Genomic Coordinates Reverse (-)

76069961 .. 76070806

Gene Structure 846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34553

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAGTCGGGAGAGCAGTAATGATTCACCTTCCGGCAGTAGTAAGGCACTATATTCTTGTTATGATGATGAGAGTGAGAATGGAATTAGTGATAGGAGAAAAAGGCATAAAGTAGAGAATAGTCATGGGTCGTCCACTACAAAGAATGAGATCAAGGATGAGGATTTGGAAAAGATTAATCCTCAGAGTCATTATTATTCCAATTCTAGTGTGGGATTTGATTATATACGCGAAAGAGTAAGGAATCACAAGGATGAAATTGACCGTCTACGCAAGGCAAACACTAACATCTTATTGTCCTGCCACAAAAAACTCCACTTAGTTATTGACCTAGATCACACCCTGCTAAATACCACCAGTCTCTCCGATATGTCGCCGGAAGAAGAATATTTGAAGACCCAAACAGACTATTGTTTGCAGAATATCGATGCTTTCAAATACGAGTTACCTCCCAAACATAAGATGACCAAGCTGAGGCCCTTTGTCAGAACCTTTCTAAAGGAAGCCAGCAACATGTTTGACATGTACATATACACAGCTGGTTCACGTCCTTACGCATTGAAAATGGTTGAGCTCCTCGGAAAAGACTACTTCGGGTCTAGGGTTATATCTCGTGATGATTTTAATGATAGCTCCAAAATGAAGTGTCTAGAACTTATGCATGGCAAAGAGTCTGCTGTTTTGATCCTTGATGACAACATGGATGCATGGACAAGGGAAAATCAGAGCAACCTGATACTAATGCGAAAGTATCTATTCTTTAAATCCAAATCGGCCGCCTATAATCGAAATTTCAAGACTCTTTCTGAATTGAAAACTGATGAGATTGATGAGTTGTCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

281

Amino Acids

32.76

Weight (kDa)

6.52

Isoelectric Point (pI)

61.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	106 - 260	1.1e-22	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017814)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0070271 RchiOBHm_Chr5g0070281
rosa_laevigata	RLG00000036122
rosa_multiflora	Rmu_sc0009590.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010870
rosa_rugosa	Rorug05G0404700 Rorug05G0404800
rosa_samantha	Rh5AG460000 Rh5BG478600 Rh5CG502800 Rh5DG490500 Rh5DG490600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	268
AccII	CGCG	1 cut(s)	231
AciI	CCGC	1 cut(s)	777
AclWI	GGATC	1 cut(s)	679
AcoI	YGGCCR	1 cut(s)	774
AcsI	RAATTY	1 cut(s)	790
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	1 cut(s)	474
AflIII	ACRYGT	2 cut(s)	513, 522
AgsI	TTSAA	5 cut(s)	394, 436, 562, 796, 814
AjiI	CACGTC	1 cut(s)	548
AluBI	AGCT	4 cut(s)	472, 539, 574, 633
AluI	AGCT	4 cut(s)	472, 539, 574, 633
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	679
AoxI	GGCC	2 cut(s)	476, 774
ApoI	RAATTY	1 cut(s)	790
AseI	ATTAAT	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	477
AsuHPI	GGTGA	1 cut(s)	18
BanII	GRGCYC	1 cut(s)	576
BauI	CACGAG	1 cut(s)	612
BbsI	GAAGAC	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	576
BbvCI	CCTCAGC	1 cut(s)	473
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	4 cut(s)	207, 332, 600, 650
BisI	GCNGC	1 cut(s)	777
BlsI	GCNGC	1 cut(s)	778
BmgBI	CACGTC	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	477
BmsI	GCATC	2 cut(s)	418, 694
BpiI	GAAGAC	1 cut(s)	401
Bpu10I	CCTNAGC	1 cut(s)	473
Bsa29I	ATCGAT	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse1I	ACTGG	1 cut(s)	357
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	3 cut(s)	163, 259, 709
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMII	CTCAG	2 cut(s)	197, 464
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	566
BseX3I	CGGCCG	1 cut(s)	774
Bsh1236I	CGCG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	777
BshFI	GGCC	2 cut(s)	478, 776
BshVI	ATCGAT	1 cut(s)	426
BsiEI	CGRYCG	1 cut(s)	777
BsiHKAI	GWGCWC	1 cut(s)	576
BsiSI	CCGG	2 cut(s)	33, 377
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmAI	GTCTC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	478, 776
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp1407I	TGTACA	1 cut(s)	525
Bsp143I	GATC	3 cut(s)	150, 334, 684
BspACI	CCGC	1 cut(s)	777
BspANI	GGCC	2 cut(s)	478, 776
BspCNI	CTCAG	2 cut(s)	196, 465
BspDI	ATCGAT	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	231
BspPI	GGATC	1 cut(s)	679
BsrGI	TGTACA	1 cut(s)	525
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	3 cut(s)	150, 334, 684
BssSI	CACGAG	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	612
Bst4CI	ACNGT	1 cut(s)	266
BstAUI	TGTACA	1 cut(s)	525
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	3 cut(s)	183, 319, 473
BstF5I	GGATG	3 cut(s)	163, 259, 709
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	3 cut(s)	153, 337, 687
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	3 cut(s)	150, 334, 684
BstMCI	CGRYCG	1 cut(s)	777
BstNSI	RCATGY	2 cut(s)	517, 526
BstUI	CGCG	1 cut(s)	231
BstV2I	GAAGAC	1 cut(s)	401
BstZI	CGGCCG	1 cut(s)	774
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	2 cut(s)	478, 776
BsuTUI	ATCGAT	1 cut(s)	426
BtrI	CACGTC	1 cut(s)	548
BtsCI	GGATG	3 cut(s)	163, 259, 709
Cac8I	GCNNGC	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	477
ClaI	ATCGAT	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	6 cut(s)	125, 514, 523, 662, 700, 708
CviJI	RGCY	7 cut(s)	472, 478, 506, 539, 574, 633, 776
CviKI_1	RGCY	7 cut(s)	472, 478, 506, 539, 574, 633, 776
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	3 cut(s)	183, 319, 473
DpnI	GATC	3 cut(s)	152, 336, 686
DpnII	GATC	3 cut(s)	150, 334, 684
DraI	TTTAAA	1 cut(s)	763
EaeI	YGGCCR	1 cut(s)	774
EagI	CGGCCG	1 cut(s)	774
Ecl136II	GAGCTC	1 cut(s)	574
EclXI	CGGCCG	1 cut(s)	774
Eco24I	GRGCYC	1 cut(s)	576
Eco52I	CGGCCG	1 cut(s)	774
Eco53kI	GAGCTC	1 cut(s)	574
EcoICRI	GAGCTC	1 cut(s)	574
EcoO109I	RGGNCCY	1 cut(s)	477
EcoT22I	ATGCAT	2 cut(s)	663, 709
EcoT38I	GRGCYC	1 cut(s)	576
FaeI	CATG	6 cut(s)	128, 517, 526, 665, 703, 711
FatI	CATG	6 cut(s)	124, 513, 522, 661, 699, 707
FblI	GTMKAC	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	777
FokI	GGATG	3 cut(s)	170, 266, 716
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	1 cut(s)	777
FspBI	CTAG	4 cut(s)	207, 332, 600, 650
GluI	GCNGC	1 cut(s)	777
HaeIII	GGCC	2 cut(s)	478, 776
HapII	CCGG	2 cut(s)	33, 377
Hin1II	CATG	6 cut(s)	128, 517, 526, 665, 703, 711
HinfI	GANTC	6 cut(s)	4, 23, 187, 244, 671, 799
HpaII	CCGG	2 cut(s)	33, 377
HphI	GGTGA	1 cut(s)	18
Hpy166II	GTNNAC	3 cut(s)	135, 269, 545
Hpy188I	TCNGA	6 cut(s)	186, 367, 488, 581, 726, 808
Hpy188III	TCNNGA	4 cut(s)	8, 614, 650, 796
Hpy8I	GTNNAC	3 cut(s)	135, 269, 545
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	3 cut(s)	418, 661, 707
HpyF3I	CTNAG	3 cut(s)	183, 319, 473
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	6 cut(s)	128, 517, 526, 665, 703, 711
Kzo9I	GATC	3 cut(s)	150, 334, 684
LmnI	GCTCC	2 cut(s)	579, 638
LpnPI	CCDG	8 cut(s)	46, 313, 356, 370, 390, 520, 525, 746
LweI	GCATC	2 cut(s)	418, 694
MaeI	CTAG	4 cut(s)	207, 332, 600, 650
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	3 cut(s)	152, 336, 686
MboI	GATC	3 cut(s)	150, 334, 684
MboII	GAAGA	3 cut(s)	392, 395, 406
MhlI	GDGCHC	1 cut(s)	576
MluCI	AATT	5 cut(s)	84, 202, 258, 790, 809
MlyI	GAGTC	4 cut(s)	13, 196, 680, 793
MnlI	CCTC	5 cut(s)	154, 192, 459, 468, 587
Mph1103I	ATGCAT	2 cut(s)	663, 709
MseI	TTAA	3 cut(s)	177, 624, 762
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	2 cut(s)	33, 377
MvnI	CGCG	1 cut(s)	231
NdeII	GATC	3 cut(s)	150, 334, 684
NlaIII	CATG	6 cut(s)	128, 517, 526, 665, 703, 711
NsiI	ATGCAT	2 cut(s)	663, 709
NspI	RCATGY	2 cut(s)	517, 526
PciI	ACATGT	2 cut(s)	513, 522
PfeI	GAWTC	2 cut(s)	23, 244
PkrI	GCNGC	1 cut(s)	778
PleI	GAGTC	4 cut(s)	12, 195, 679, 793
PpsI	GAGTC	4 cut(s)	12, 195, 679, 793
PscI	ACATGT	2 cut(s)	513, 522
PshBI	ATTAAT	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	477
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	576
SaqAI	TTAA	3 cut(s)	177, 624, 762
SatI	GCNGC	1 cut(s)	777
Sau3AI	GATC	3 cut(s)	150, 334, 684
Sau96I	GGNCC	1 cut(s)	477
SchI	GAGTC	4 cut(s)	13, 196, 680, 793
SduI	GDGCHC	1 cut(s)	576
SfaNI	GCATC	2 cut(s)	418, 694
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	5 cut(s)	84, 202, 258, 790, 809
SsiI	CCGC	1 cut(s)	777
SspI	AATATT	1 cut(s)	389
SspMI	CTAG	4 cut(s)	207, 332, 600, 650
SstI	GAGCTC	1 cut(s)	576
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	2 cut(s)	426, 787
TasI	AATT	5 cut(s)	84, 202, 258, 790, 809
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	1 cut(s)	779
TfiI	GAWTC	2 cut(s)	23, 244
Tru1I	TTAA	3 cut(s)	177, 624, 762
Tru9I	TTAA	3 cut(s)	177, 624, 762
TspDTI	ATGAA	2 cut(s)	270, 656
VspI	ATTAAT	1 cut(s)	177
XapI	RAATTY	1 cut(s)	790
XbaI	TCTAGA	1 cut(s)	649
XceI	RCATGY	2 cut(s)	517, 526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	268
XspI	CTAG	4 cut(s)	207, 332, 600, 650
Zsp2I	ATGCAT	2 cut(s)	663, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.