Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017814

Physical Location & Seq

Genomic Coordinates Reverse (-)

76072280 .. 76073764

Gene Structure 1485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036122

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGAGTTTGGAGAGTAGTAATGATTCACCGTCCGGCAGAAGTAAGGCACTATATTCTTGTTATGATGATGAGAGTGAGATTGGAATCAGTGATAGGAGAAAAAGGCATAAAGTAGAGAATAGTCATGGGTCGTCCACTACAAAGAAGGAGAACAAGGATGAGACTTTGGAAAAGATTAATCCTCAGAGTTATTATTATTCCAATTCTAGTGTGGGATTTGATTATTTACGCGAAAGATTAAGGAATCACAAGGATGAAATTGACCGTTTACGCAAGGCAAACACTAACATCTTATTGGCCTGCCACAAAAAACTCCACTTGGTTATTGACCTAGATCACACCCTGCTAAATACCACCAGTCTCTCCGATATGTCGCCGGAAGAAGAATATTTGAAGACCCAAACAGACTATTGTTTGCAGAATATCGATGCTTTCAAATACGAGTTACCTCCCAAACATAAGATGTCCAAGCTGAGGCCCTTTGTCAGAACCTTTCTAAAGGAAGCCAGCAACATGTTTGACATGTACATATACACAGCTGGTTCACGTCCTTACGCATTGAAAATGGTTGAGCTCCTCGGAAAAGACTACTTCGGGTCTAGGGTTATATCTCGTGATGATTTTAATGATAGCTCCAAAATGAAGCGTCTAGAACTTATGCATGGCAAAGAGTCTGCTGTTTTGATCCTTGCTGATAACATGGATGCATGGACAAGGGAAAATCAGAGCAACCTGATACTAATGCGAAAGTATCTATTCTTTAAATCCAAATCGGCTCCCTATAATCGAAATTTCAAGACTCTTTCTGAATTGAAAACTGATGAGATTGATGAGTTGTCTCAACAACCCTATCTTGCAACTATTCTCCAACTTCTGAAGCAAATCCACAGCATGTTCTTCAATGATGAAGCGACCGTTGGGGACAATCTTATCGACAGAGATGTGAGGAAGGTGTTGAAAACTCTTAGGAAGAATGTCTTGAAAGGGTGTAAGATTGGTTTCCCCCCTCCTCGGCCCGATATGATTCAGTGGTGGAACATGGCACAGCGATTGGGAGCCACTTGCGTTAAGAAAGTGGATGATCCATCAGTGACACATGTGGTTGCAACACAAACTGATGCTGGAAGACCAATGGCGGTGGAAGACCACAAGTTCTTGGTCCATTTCCGGTGGATAGAAGAATCAAACTTTATGTGGCAAAAGCAACCTGAAGACAAGTTTCCTGTTCCTGTAATTGAGGTTGGCAAAATTGCCCAACCTGAAAGTGCCACCACTGAAATTACCAGCCCCGAAATTAGCCTCCCTGGATTCTTCACCCGCCACCGATCAGTATTCCTTCCCTTATTCCTTGACCCCAGTTACCTTGTTGGCTACAATAAGTGGCCTGATTGGCAGGAAGAGGAAGTGGTTATAGTAGTAGTCTCTGTTTTGGATTGGAACTATAGTGATTTAATCATAAATTTCTTTAGGCAAAAAATTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

495

Amino Acids

57.52

Weight (kDa)

7.21

Isoelectric Point (pI)

59.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	106 - 272	1.9e-20	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017814)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0070271 RchiOBHm_Chr5g0070281
rosa_laevigata	RLG00000036122
rosa_multiflora	Rmu_sc0009590.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010870
rosa_rugosa	Rorug05G0404700 Rorug05G0404800
rosa_samantha	Rh5AG460000 Rh5BG478600 Rh5CG502800 Rh5DG490500 Rh5DG490600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	231
AciI	CCGC	2 cut(s)	1136, 1318
AclWI	GGATC	2 cut(s)	679, 1076
AcsI	RAATTY	2 cut(s)	790, 1459
AcuI	CTGAAG	2 cut(s)	896, 1230
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	2 cut(s)	474, 1011
AflIII	ACRYGT	3 cut(s)	513, 522, 1096
AgsI	TTSAA	8 cut(s)	394, 436, 562, 796, 814, 901, 958, 982
AjiI	CACGTC	1 cut(s)	548
AjnI	CCWGG	1 cut(s)	1303
AjuI	GAANNNNNNNTTGG	2 cut(s)	900, 932
AluBI	AGCT	4 cut(s)	472, 539, 574, 633
AluI	AGCT	4 cut(s)	472, 539, 574, 633
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	4 cut(s)	155, 365, 843, 1426
AlwI	GGATC	2 cut(s)	679, 1076
AoxI	GGCC	4 cut(s)	297, 476, 1013, 1382
ApoI	RAATTY	2 cut(s)	790, 1459
AseI	ATTAAT	1 cut(s)	177
AspS9I	GGNCC	3 cut(s)	477, 1014, 1159
AsuHPI	GGTGA	2 cut(s)	18, 1306
AvaII	GGWCC	1 cut(s)	1159
BanII	GRGCYC	1 cut(s)	576
BauI	CACGAG	1 cut(s)	612
BbsI	GAAGAC	4 cut(s)	401, 1132, 1149, 1218
Bbv12I	GWGCWC	1 cut(s)	576
BbvCI	CCTCAGC	1 cut(s)	473
BccI	CCATC	1 cut(s)	1093
BciT130I	CCWGG	1 cut(s)	1305
BcoDI	GTCTC	4 cut(s)	155, 365, 843, 1426
BfaI	CTAG	4 cut(s)	207, 332, 600, 650
BfmI	CTRYAG	1 cut(s)	1441
BglI	GCCNNNNNGGC	1 cut(s)	1390
Bme1390I	CCNGG	1 cut(s)	1305
Bme18I	GGWCC	1 cut(s)	1159
BmgBI	CACGTC	1 cut(s)	548
BmgT120I	GGNCC	3 cut(s)	477, 1014, 1159
BmiI	GGNNCC	2 cut(s)	777, 1057
BmrFI	CCNGG	1 cut(s)	1305
BmrI	ACTGGG	1 cut(s)	1350
BmsI	GCATC	3 cut(s)	418, 694, 1108
BmuI	ACTGGG	1 cut(s)	1350
BpiI	GAAGAC	4 cut(s)	401, 1132, 1149, 1218
Bpu10I	CCTNAGC	1 cut(s)	473
Bsa29I	ATCGAT	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	577, 1010, 1303
BsaWI	WCCGGW	1 cut(s)	1167
Bsc4I	CCNNNNNNNGG	2 cut(s)	474, 1011
Bse1I	ACTGG	2 cut(s)	357, 1356
Bse8I	GATNNNNATC	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	1305
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	3 cut(s)	577, 1010, 1303
BseGI	GGATG	4 cut(s)	163, 259, 709, 1084
BseJI	GATNNNNATC	1 cut(s)	83
BseLI	CCNNNNNNNGG	2 cut(s)	474, 1011
BseMII	CTCAG	2 cut(s)	197, 464
BseNI	ACTGG	2 cut(s)	357, 1356
BseRI	GAGGAG	2 cut(s)	566, 999
Bsh1236I	CGCG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	915
BshFI	GGCC	4 cut(s)	299, 478, 1015, 1384
BshVI	ATCGAT	1 cut(s)	426
BsiEI	CGRYCG	1 cut(s)	915
BsiHKAI	GWGCWC	1 cut(s)	576
BsiSI	CCGG	3 cut(s)	33, 377, 1168
BslFI	GGGAC	1 cut(s)	935
BslI	CCNNNNNNNGG	2 cut(s)	474, 1011
BsmAI	GTCTC	4 cut(s)	155, 365, 843, 1426
BsmFI	GGGAC	1 cut(s)	935
BsnI	GGCC	4 cut(s)	299, 478, 1015, 1384
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp1407I	TGTACA	1 cut(s)	525
Bsp143I	GATC	4 cut(s)	334, 684, 1081, 1325
BspACI	CCGC	2 cut(s)	1136, 1318
BspANI	GGCC	4 cut(s)	299, 478, 1015, 1384
BspCNI	CTCAG	2 cut(s)	196, 465
BspDI	ATCGAT	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	777, 1057
BspPI	GGATC	2 cut(s)	679, 1076
BsrGI	TGTACA	1 cut(s)	525
BsrI	ACTGG	2 cut(s)	357, 1356
BssECI	CCNNGG	3 cut(s)	577, 1010, 1303
BssMI	GATC	4 cut(s)	334, 684, 1081, 1325
BssSI	CACGAG	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	612
Bst2UI	CCWGG	1 cut(s)	1305
Bst4CI	ACNGT	3 cut(s)	30, 266, 916
Bst6I	CTCTTC	1 cut(s)	1392
BstAUI	TGTACA	1 cut(s)	525
BstC8I	GCNNGC	2 cut(s)	301, 508
BstDEI	CTNAG	3 cut(s)	183, 473, 965
BstF5I	GGATG	4 cut(s)	163, 259, 709, 1084
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	4 cut(s)	337, 687, 1084, 1328
BstMAI	GTCTC	4 cut(s)	155, 365, 843, 1426
BstMBI	GATC	4 cut(s)	334, 684, 1081, 1325
BstMCI	CGRYCG	1 cut(s)	915
BstMWI	GCNNNNNNNGC	1 cut(s)	1390
BstNI	CCWGG	1 cut(s)	1305
BstNSI	RCATGY	4 cut(s)	517, 526, 895, 1100
BstSCI	CCNGG	1 cut(s)	1303
BstSFI	CTRYAG	1 cut(s)	1441
BstUI	CGCG	1 cut(s)	231
BstV2I	GAAGAC	4 cut(s)	401, 1132, 1149, 1218
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	4 cut(s)	299, 478, 1015, 1384
BsuTUI	ATCGAT	1 cut(s)	426
BtrI	CACGTC	1 cut(s)	548
BtsCI	GGATG	4 cut(s)	163, 259, 709, 1084
BtsIMutI	CAGTG	4 cut(s)	94, 1034, 1095, 1272
Cac8I	GCNNGC	2 cut(s)	301, 508
Cfr13I	GGNCC	3 cut(s)	477, 1014, 1159
ClaI	ATCGAT	1 cut(s)	426
CseI	GACGC	1 cut(s)	635
Csp6I	GTAC	1 cut(s)	526
CspCI	CAANNNNNGTGG	2 cut(s)	1119, 1154
CviAII	CATG	9 cut(s)	125, 514, 523, 662, 700, 708, 892, 1039, 1097
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	3 cut(s)	183, 473, 965
DpnI	GATC	4 cut(s)	336, 686, 1083, 1327
DpnII	GATC	4 cut(s)	334, 684, 1081, 1325
DraI	TTTAAA	1 cut(s)	763
Eam1104I	CTCTTC	1 cut(s)	1392
EarI	CTCTTC	1 cut(s)	1392
Ecl136II	GAGCTC	1 cut(s)	574
Eco24I	GRGCYC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	1159
Eco53kI	GAGCTC	1 cut(s)	574
Eco57I	CTGAAG	2 cut(s)	896, 1230
EcoICRI	GAGCTC	1 cut(s)	574
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	1303
EcoT22I	ATGCAT	2 cut(s)	663, 709
EcoT38I	GRGCYC	1 cut(s)	576
FaeI	CATG	9 cut(s)	128, 517, 526, 665, 703, 711, 895, 1042, 1100
FalI	AAGNNNNNCTT	2 cut(s)	962, 994
FaqI	GGGAC	1 cut(s)	935
FatI	CATG	9 cut(s)	124, 513, 522, 661, 699, 707, 891, 1038, 1096
FauI	CCCGC	1 cut(s)	1325
FokI	GGATG	4 cut(s)	170, 266, 716, 1091
FriOI	GRGCYC	1 cut(s)	576
FspBI	CTAG	4 cut(s)	207, 332, 600, 650
HaeIII	GGCC	4 cut(s)	299, 478, 1015, 1384
HapII	CCGG	3 cut(s)	33, 377, 1168
HgaI	GACGC	1 cut(s)	635
Hin1II	CATG	9 cut(s)	128, 517, 526, 665, 703, 711, 895, 1042, 1100
HinfI	GANTC	8 cut(s)	23, 84, 244, 671, 799, 1024, 1181, 1308
HpaII	CCGG	3 cut(s)	33, 377, 1168
HphI	GGTGA	2 cut(s)	18, 1306
Hpy166II	GTNNAC	3 cut(s)	135, 269, 545
Hpy188I	TCNGA	7 cut(s)	186, 367, 488, 581, 726, 808, 876
Hpy188III	TCNNGA	4 cut(s)	614, 650, 796, 979
Hpy8I	GTNNAC	3 cut(s)	135, 269, 545
HpyAV	CCTTC	3 cut(s)	139, 943, 1346
HpyCH4III	ACNGT	3 cut(s)	30, 266, 916
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	5 cut(s)	418, 661, 707, 857, 1106
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1390
HpyF3I	CTNAG	3 cut(s)	183, 473, 965
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	9 cut(s)	128, 517, 526, 665, 703, 711, 895, 1042, 1100
Kzo9I	GATC	4 cut(s)	334, 684, 1081, 1325
LmnI	GCTCC	4 cut(s)	579, 638, 781, 1055
LweI	GCATC	3 cut(s)	418, 694, 1108
MaeI	CTAG	4 cut(s)	207, 332, 600, 650
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	3 cut(s)	444, 1090, 1358
MalI	GATC	4 cut(s)	336, 686, 1083, 1327
MboI	GATC	4 cut(s)	334, 684, 1081, 1325
MhlI	GDGCHC	1 cut(s)	576
MlyI	GAGTC	2 cut(s)	680, 793
MmeI	TCCRAC	1 cut(s)	892
Mph1103I	ATGCAT	2 cut(s)	663, 709
MseI	TTAA	6 cut(s)	177, 239, 624, 762, 1068, 1451
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	3 cut(s)	33, 377, 1168
MspR9I	CCNGG	1 cut(s)	1305
MvaI	CCWGG	1 cut(s)	1305
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	1390
NdeII	GATC	4 cut(s)	334, 684, 1081, 1325
NlaIII	CATG	9 cut(s)	128, 517, 526, 665, 703, 711, 895, 1042, 1100
NlaIV	GGNNCC	2 cut(s)	777, 1057
NmeAIII	GCCGAG	1 cut(s)	991
NmuCI	GTSAC	1 cut(s)	1090
NsiI	ATGCAT	2 cut(s)	663, 709
NspI	RCATGY	4 cut(s)	517, 526, 895, 1100
PciI	ACATGT	3 cut(s)	513, 522, 1096
PfeI	GAWTC	6 cut(s)	23, 84, 244, 1024, 1181, 1308
PleI	GAGTC	2 cut(s)	679, 793
PpsI	GAGTC	2 cut(s)	679, 793
PscI	ACATGT	3 cut(s)	513, 522, 1096
PshBI	ATTAAT	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	1303
PspGI	CCWGG	1 cut(s)	1303
PspN4I	GGNNCC	2 cut(s)	777, 1057
PspPI	GGNCC	3 cut(s)	477, 1014, 1159
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	576
SaqAI	TTAA	6 cut(s)	177, 239, 624, 762, 1068, 1451
Sau3AI	GATC	4 cut(s)	334, 684, 1081, 1325
Sau96I	GGNCC	3 cut(s)	477, 1014, 1159
SchI	GAGTC	2 cut(s)	680, 793
ScrFI	CCNGG	1 cut(s)	1305
SduI	GDGCHC	1 cut(s)	576
SfaNI	GCATC	3 cut(s)	418, 694, 1108
SfcI	CTRYAG	1 cut(s)	1441
SinI	GGWCC	1 cut(s)	1159
SmiMI	CAYNNNNRTG	1 cut(s)	252
SsiI	CCGC	2 cut(s)	1136, 1318
SspI	AATATT	1 cut(s)	389
SspMI	CTAG	4 cut(s)	207, 332, 600, 650
SstI	GAGCTC	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	1303
TaaI	ACNGT	3 cut(s)	30, 266, 916
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	3 cut(s)	426, 787, 933
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	6 cut(s)	23, 84, 244, 1024, 1181, 1308
Tru1I	TTAA	6 cut(s)	177, 239, 624, 762, 1068, 1451
Tru9I	TTAA	6 cut(s)	177, 239, 624, 762, 1068, 1451
TscAI	CASTG	4 cut(s)	94, 1034, 1095, 1279
TseFI	GTSAC	1 cut(s)	1090
Tsp45I	GTSAC	1 cut(s)	1090
TspDTI	ATGAA	3 cut(s)	270, 656, 921
TspRI	CASTG	4 cut(s)	94, 1034, 1095, 1279
VpaK11BI	GGWCC	1 cut(s)	1159
VspI	ATTAAT	1 cut(s)	177
XapI	RAATTY	2 cut(s)	790, 1459
XbaI	TCTAGA	1 cut(s)	649
XceI	RCATGY	4 cut(s)	517, 526, 895, 1100
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XspI	CTAG	4 cut(s)	207, 332, 600, 650
Zsp2I	ATGCAT	2 cut(s)	663, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.