Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017814

Physical Location & Seq

Genomic Coordinates Forward (+)

13835410 .. 13836820

Gene Structure 1411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00010870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAGTCTGGAGAGCAGTAATGATTCACCTTCCGGCTGTCGTAAGGCACTATATTCTTGTCATGATGCTGAGAGTGAGATTGGAATTAGTGATAGGAGAAAAAGGCATGAAGTAGAGAATAGTCATGGGTCGTCCACTACAAAGAAGGAGATCAAGGATGAGATTTTGGAAAAGATTAATCCTCAGAGTCATTATTATTCCAATTCTAGTGTGGGATTTGATTATATACGCGAAAGAAATATCGATGCTTTCAAACACGAGTTACCTCCCAAACAAAAGATGACCAAGCTGAGGCCCTTTGTCAGAACCTTTCTAAAGGAAGCCAGCAACATGTTTGACATGTACATATACACAGCTGGTTCACGTCCTTACGCATTGAAAATGGTTGTGCTCCTCGGAAAAGACTACTTTGGGTCTAGGGTTATATCTCGTGATGATTTTAATGATAGCTCCAAAATGAAGTGTCTAGAACTTATGCATGGCAAAGAGTCTGCTGCTTTGATCCTTGATGATAACATGGATGCCTGGACAAGGGAAAATCAGAGCAACCTGATACTAATGCGAAACATGTTCTTCGATGATGAAGCGACCGTTGGGGACAATCTTATCGACAGAGATGTGAGGAAGGTGTTGGAAACTCTTAGGAAGAATGTCTTGAAAGGGTTGGATGATCCATCAGTGACACATGCGGTTGCGACGCAAACTGATGCTGGAAGGCCAATGGCGGTGGACGACAACAAGTTCTTGGTCCATTTCCGGTGGATAGAAGAATCATACTTTATGTGGCAAAAGCAACCTGAAGACAAGTTTCCTGTTCCTCTAATTGAGGTTGGCAAAATTGCCCAACCTGAAAGTGCCAGCACTGAAAGTACCAGCCCCGAAATTACCCTCCCTGGATTCTTCACCCGCCTCCGATCAGTATTCCTTCCCTTATTCCTTGACCCGGTTACCTTGTTGGCTACAATAAGTGGCCTGATTGGCAGGAAGAGGAAGAGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

333

Amino Acids

38.15

Weight (kDa)

6.73

Isoelectric Point (pI)

63.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	93 - 195	9.1e-16	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017814)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0070271 RchiOBHm_Chr5g0070281
rosa_laevigata	RLG00000036122
rosa_multiflora	Rmu_sc0009590.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010870
rosa_rugosa	Rorug05G0404700 Rorug05G0404800
rosa_samantha	Rh5AG460000 Rh5BG478600 Rh5CG502800 Rh5DG490500 Rh5DG490600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	231
AciI	CCGC	3 cut(s)	689, 725, 907
AclWI	GGATC	2 cut(s)	496, 665
AcuI	CTGAAG	1 cut(s)	819
AfaI	GTAC	2 cut(s)	344, 871
AfiI	CCNNNNNNNGG	3 cut(s)	291, 531, 943
AflIII	ACRYGT	3 cut(s)	330, 339, 567
AgsI	TTSAA	3 cut(s)	253, 379, 658
AjiI	CACGTC	1 cut(s)	365
AjnI	CCWGG	2 cut(s)	524, 892
AjuI	GAANNNNNNNTTGG	2 cut(s)	576, 608
AluBI	AGCT	3 cut(s)	289, 356, 450
AluI	AGCT	3 cut(s)	289, 356, 450
Alw21I	GWGCWC	1 cut(s)	393
AlwI	GGATC	2 cut(s)	496, 665
AoxI	GGCC	3 cut(s)	293, 716, 970
ApeKI	GCWGC	1 cut(s)	494
AseI	ATTAAT	1 cut(s)	177
AspS9I	GGNCC	2 cut(s)	294, 748
AsuC2I	CCSGG	1 cut(s)	944
AsuHPI	GGTGA	2 cut(s)	18, 895
AvaII	GGWCC	1 cut(s)	748
BauI	CACGAG	2 cut(s)	257, 429
BbsI	GAAGAC	1 cut(s)	807
Bbv12I	GWGCWC	1 cut(s)	393
BbvCI	CCTCAGC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	1 cut(s)	682
BciT130I	CCWGG	2 cut(s)	526, 894
BcnI	CCSGG	1 cut(s)	944
BfaI	CTAG	3 cut(s)	207, 417, 467
BglI	GCCNNNNNGGC	1 cut(s)	978
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
Bme1390I	CCNGG	3 cut(s)	526, 894, 944
Bme18I	GGWCC	1 cut(s)	748
BmgBI	CACGTC	1 cut(s)	365
BmgT120I	GGNCC	2 cut(s)	294, 748
BmrFI	CCNGG	3 cut(s)	526, 894, 944
BmsI	GCATC	4 cut(s)	55, 235, 511, 697
BpiI	GAAGAC	1 cut(s)	807
BpmI	CTGGAG	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	944
Bsa29I	ATCGAT	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	394, 892
BsaWI	WCCGGW	1 cut(s)	756
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 531, 943
BseBI	CCWGG	2 cut(s)	526, 894
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	394, 892
BseGI	GGATG	3 cut(s)	163, 526, 673
BseLI	CCNNNNNNNGG	3 cut(s)	291, 531, 943
BseMII	CTCAG	3 cut(s)	60, 197, 281
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	481
Bsh1236I	CGCG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	591
BshFI	GGCC	3 cut(s)	295, 718, 972
BshVI	ATCGAT	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	591
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	3 cut(s)	33, 757, 944
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	3 cut(s)	291, 531, 943
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	3 cut(s)	295, 718, 972
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	150, 501, 670, 914
BspACI	CCGC	3 cut(s)	689, 725, 907
BspANI	GGCC	3 cut(s)	295, 718, 972
BspCNI	CTCAG	3 cut(s)	61, 196, 282
BspDI	ATCGAT	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	61
BspPI	GGATC	2 cut(s)	496, 665
BsrGI	TGTACA	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	394, 892
BssMI	GATC	4 cut(s)	150, 501, 670, 914
BssSI	CACGAG	2 cut(s)	257, 429
Bst2BI	CACGAG	2 cut(s)	257, 429
Bst2UI	CCWGG	2 cut(s)	526, 894
Bst4CI	ACNGT	1 cut(s)	592
Bst6I	CTCTTC	2 cut(s)	980, 986
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	325, 859
BstDEI	CTNAG	4 cut(s)	69, 183, 290, 641
BstEII	GGTNACC	1 cut(s)	946
BstENI	CCTNNNNNAGG	1 cut(s)	529
BstF5I	GGATG	3 cut(s)	163, 526, 673
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	4 cut(s)	153, 504, 673, 917
BstMBI	GATC	4 cut(s)	150, 501, 670, 914
BstMCI	CGRYCG	1 cut(s)	591
BstMWI	GCNNNNNNNGC	1 cut(s)	978
BstNI	CCWGG	2 cut(s)	526, 894
BstNSI	RCATGY	4 cut(s)	334, 343, 571, 689
BstPI	GGTNACC	1 cut(s)	946
BstSCI	CCNGG	3 cut(s)	524, 892, 942
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	481
BstV2I	GAAGAC	1 cut(s)	807
Bsu15I	ATCGAT	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	295, 718, 972
BsuTUI	ATCGAT	1 cut(s)	243
BtrI	CACGTC	1 cut(s)	365
BtsCI	GGATG	3 cut(s)	163, 526, 673
BtsIMutI	CAGTG	2 cut(s)	684, 861
Cac8I	GCNNGC	2 cut(s)	325, 859
CciI	TCATGA	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	294, 748
ClaI	ATCGAT	1 cut(s)	243
CseI	GACGC	1 cut(s)	706
Csp6I	GTAC	2 cut(s)	343, 870
CspCI	CAANNNNNGTGG	2 cut(s)	708, 743
CviAII	CATG	9 cut(s)	62, 107, 125, 331, 340, 479, 517, 568, 686
CviQI	GTAC	2 cut(s)	343, 870
DdeI	CTNAG	4 cut(s)	69, 183, 290, 641
DpnI	GATC	4 cut(s)	152, 503, 672, 916
DpnII	GATC	4 cut(s)	150, 501, 670, 914
Eam1104I	CTCTTC	2 cut(s)	980, 986
EarI	CTCTTC	2 cut(s)	980, 986
Eco47I	GGWCC	1 cut(s)	748
Eco57I	CTGAAG	1 cut(s)	819
Eco91I	GGTNACC	1 cut(s)	946
EcoNI	CCTNNNNNAGG	1 cut(s)	529
EcoO109I	RGGNCCY	1 cut(s)	294
EcoO65I	GGTNACC	1 cut(s)	946
EcoRII	CCWGG	2 cut(s)	524, 892
EcoT22I	ATGCAT	1 cut(s)	480
FaeI	CATG	9 cut(s)	65, 110, 128, 334, 343, 482, 520, 571, 689
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	9 cut(s)	61, 106, 124, 330, 339, 478, 516, 567, 685
FauI	CCCGC	1 cut(s)	914
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	3 cut(s)	170, 533, 680
Fsp4HI	GCNGC	1 cut(s)	495
FspBI	CTAG	3 cut(s)	207, 417, 467
GluI	GCNGC	1 cut(s)	495
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	3 cut(s)	295, 718, 972
HapII	CCGG	3 cut(s)	33, 757, 944
HgaI	GACGC	1 cut(s)	706
Hin1II	CATG	9 cut(s)	65, 110, 128, 334, 343, 482, 520, 571, 689
HinfI	GANTC	6 cut(s)	4, 23, 187, 488, 770, 897
HpaII	CCGG	3 cut(s)	33, 757, 944
HphI	GGTGA	2 cut(s)	18, 895
Hpy166II	GTNNAC	3 cut(s)	135, 362, 730
Hpy188I	TCNGA	5 cut(s)	186, 305, 398, 543, 914
Hpy188III	TCNNGA	5 cut(s)	8, 62, 431, 467, 655
Hpy8I	GTNNAC	3 cut(s)	135, 362, 730
Hpy99I	CGWCG	1 cut(s)	700
HpyAV	CCTTC	5 cut(s)	39, 139, 619, 708, 935
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	1 cut(s)	478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	978
HpyF3I	CTNAG	4 cut(s)	69, 183, 290, 641
HpySE526I	ACGT	1 cut(s)	364
Hsp92II	CATG	9 cut(s)	65, 110, 128, 334, 343, 482, 520, 571, 689
Kzo9I	GATC	4 cut(s)	150, 501, 670, 914
LmnI	GCTCC	2 cut(s)	396, 455
Lsp1109I	GCAGC	1 cut(s)	481
LweI	GCATC	4 cut(s)	55, 235, 511, 697
MaeI	CTAG	3 cut(s)	207, 417, 467
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	3 cut(s)	261, 679, 946
MalI	GATC	4 cut(s)	152, 503, 672, 916
MboI	GATC	4 cut(s)	150, 501, 670, 914
MboII	GAAGA	6 cut(s)	565, 658, 779, 812, 892, 997
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	5 cut(s)	84, 202, 822, 837, 882
MlyI	GAGTC	3 cut(s)	13, 196, 497
MmeI	TCCRAC	2 cut(s)	612, 645
Mph1103I	ATGCAT	1 cut(s)	480
MseI	TTAA	2 cut(s)	177, 441
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	3 cut(s)	33, 757, 944
MspR9I	CCNGG	3 cut(s)	526, 894, 944
MvaI	CCWGG	2 cut(s)	526, 894
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	978
NciI	CCSGG	1 cut(s)	944
NdeII	GATC	4 cut(s)	150, 501, 670, 914
NlaIII	CATG	9 cut(s)	65, 110, 128, 334, 343, 482, 520, 571, 689
NmuCI	GTSAC	1 cut(s)	679
NsiI	ATGCAT	1 cut(s)	480
NspI	RCATGY	4 cut(s)	334, 343, 571, 689
PagI	TCATGA	1 cut(s)	61
PciI	ACATGT	3 cut(s)	330, 339, 567
PfeI	GAWTC	3 cut(s)	23, 770, 897
PkrI	GCNGC	1 cut(s)	496
PleI	GAGTC	3 cut(s)	12, 195, 496
PpsI	GAGTC	3 cut(s)	12, 195, 496
PscI	ACATGT	3 cut(s)	330, 339, 567
PshBI	ATTAAT	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	524, 892
PspEI	GGTNACC	1 cut(s)	946
PspGI	CCWGG	2 cut(s)	524, 892
PspPI	GGNCC	2 cut(s)	294, 748
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	2 cut(s)	344, 871
RsaNI	GTAC	2 cut(s)	343, 870
SaqAI	TTAA	2 cut(s)	177, 441
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	4 cut(s)	150, 501, 670, 914
Sau96I	GGNCC	2 cut(s)	294, 748
SchI	GAGTC	3 cut(s)	13, 196, 497
ScrFI	CCNGG	3 cut(s)	526, 894, 944
SduI	GDGCHC	1 cut(s)	393
SfaNI	GCATC	4 cut(s)	55, 235, 511, 697
SinI	GGWCC	1 cut(s)	748
Sse9I	AATT	5 cut(s)	84, 202, 822, 837, 882
SsiI	CCGC	3 cut(s)	689, 725, 907
SspMI	CTAG	3 cut(s)	207, 417, 467
StyD4I	CCNGG	3 cut(s)	524, 892, 942
TaaI	ACNGT	1 cut(s)	592
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	3 cut(s)	243, 576, 609
TasI	AATT	5 cut(s)	84, 202, 822, 837, 882
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	3 cut(s)	23, 770, 897
Tru1I	TTAA	2 cut(s)	177, 441
Tru9I	TTAA	2 cut(s)	177, 441
TscAI	CASTG	2 cut(s)	684, 868
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	679
TspDTI	ATGAA	3 cut(s)	123, 473, 597
TspRI	CASTG	2 cut(s)	684, 868
VpaK11BI	GGWCC	1 cut(s)	748
VspI	ATTAAT	1 cut(s)	177
XagI	CCTNNNNNAGG	1 cut(s)	529
XbaI	TCTAGA	1 cut(s)	466
XceI	RCATGY	4 cut(s)	334, 343, 571, 689
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XspI	CTAG	3 cut(s)	207, 417, 467
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.