Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0017814

Physical Location & Seq

Genomic Coordinates Reverse (-)

55712916 .. 55714793

Gene Structure 1878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0404700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGACAATCAATGCAGCCCTTTACTTAGCAGCTGGGCATACTACTGCCAAGGAAAGAGCATGGATGATTTGAGGCATTCCCTTTTGTATGCAACTGTGGAGCTTGAACAAACAAGGGCTGCAGCACAAGAGGAGCTGAGGAAGAGAGATGAGCAACTGAGCCACCTCAAAGATCTGCTCAACAATGCTATCAGAGAAAAAGATGAGGCCCAAGAGAAATGCCAAAGACTGTTCCTTGAGAAACTCCTCCAACAACAACACAACCACACAGCTCCTCTGTCTGGAATTTCAAGCATAGAAGATGAGCCCAGGAGAGGAGGGATTGACTCCAACAATGGTGGAGGGTTTTCTTCCTCAGATTGTGAAGAGAGCATTGTGTCTTCACCAGTAGTTGACACAATTCCACCAACCCAGTTGCCATTACCATCATCTCTTCAAAACCAAATTGGGGAATTGGTGCCTGACAAGCCATTGCCTGAAAAAGGCAAGCTTTTACAGGCAGTGAGGAATGCTGGTCCATTGCTCCAGACCCTTCTTTTGGCTGGACCACTCCCTCAATGGAGACACCCACCTCCTCCTCTTGAGTCCTTTGAGATCCCACCTGTCACTATTACTTCACCACCAATACCACTGCCAAAGCCACTGCTCATCCACCAAGACTCCTTAATTAGTGTTAATGGCTGCAACAGGAAGAGGGTTCTTTGTGAAGGCTCTGATTCCCCTAATTCAGAGACCAAGTACCAAAGAGTAGTCCACCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

253

Amino Acids

28.09

Weight (kDa)

5.63

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1635	PF07795	19 - 250	1.6e-89	Protein of unknown function (DUF1635)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017814)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0070271 RchiOBHm_Chr5g0070281
rosa_laevigata	RLG00000036122
rosa_multiflora	Rmu_sc0009590.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010870
rosa_rugosa	Rorug05G0404700 Rorug05G0404800
rosa_samantha	Rh5AG460000 Rh5BG478600 Rh5CG502800 Rh5DG490500 Rh5DG490600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	457
AclWI	GGATC	1 cut(s)	589
AcsI	RAATTY	1 cut(s)	285
AfaI	GTAC	1 cut(s)	740
AfiI	CCNNNNNNNGG	5 cut(s)	281, 314, 448, 482, 538
AgsI	TTSAA	3 cut(s)	107, 291, 437
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	5 cut(s)	33, 103, 136, 272, 490
AluI	AGCT	5 cut(s)	33, 103, 136, 272, 490
Alw26I	GTCTC	2 cut(s)	556, 725
AlwI	GGATC	1 cut(s)	589
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	5 cut(s)	15, 30, 119, 122, 681
ApoI	RAATTY	1 cut(s)	285
ArsI	GACNNNNNNTTYG	2 cut(s)	520, 552
AspS9I	GGNCC	3 cut(s)	208, 515, 545
AsuHPI	GGTGA	2 cut(s)	375, 609
AvaII	GGWCC	2 cut(s)	515, 545
BanI	GGYRCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	372
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	5 cut(s)	27, 42, 106, 134, 668
BccI	CCATC	1 cut(s)	433
BciT130I	CCWGG	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	556, 725
BfmI	CTRYAG	1 cut(s)	120
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	5 cut(s)	16, 31, 120, 123, 682
BlsI	GCNGC	5 cut(s)	17, 32, 121, 124, 683
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	2 cut(s)	515, 545
BmgT120I	GGNCC	3 cut(s)	208, 515, 545
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	1 cut(s)	310
BmrI	ACTGGG	1 cut(s)	406
BmuI	ACTGGG	1 cut(s)	406
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	509
Bpu10I	CCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	2 cut(s)	257, 602
BsaI	GGTCTC	1 cut(s)	725
BsaJI	CCNNGG	2 cut(s)	49, 308
BsaXI	ACNNNNNCTCC	2 cut(s)	644, 674
Bsc4I	CCNNNNNNNGG	5 cut(s)	281, 314, 448, 482, 538
Bse1I	ACTGG	2 cut(s)	386, 412
Bse3DI	GCAATG	2 cut(s)	470, 518
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	2 cut(s)	49, 308
BseGI	GGATG	2 cut(s)	70, 648
BseLI	CCNNNNNNNGG	5 cut(s)	281, 314, 448, 482, 538
BseMI	GCAATG	2 cut(s)	470, 518
BseMII	CTCAG	3 cut(s)	128, 149, 369
BseNI	ACTGG	2 cut(s)	386, 412
BseRI	GAGGAG	6 cut(s)	146, 236, 264, 330, 564, 567
BseXI	GCAGC	5 cut(s)	27, 42, 106, 134, 668
BseYI	CCCAGC	1 cut(s)	33
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	457
BslI	CCNNNNNNNGG	5 cut(s)	281, 314, 448, 482, 538
BsmAI	GTCTC	2 cut(s)	556, 725
BsmI	GAATGC	2 cut(s)	76, 514
BsnI	GGCC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	725
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	172, 594
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	3 cut(s)	129, 150, 368
BspLI	GGNNCC	1 cut(s)	459
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	1 cut(s)	589
BspT107I	GGYRCC	1 cut(s)	457
BspTNI	GGTCTC	1 cut(s)	725
BsrDI	GCAATG	2 cut(s)	470, 518
BsrI	ACTGG	2 cut(s)	386, 412
BssECI	CCNNGG	2 cut(s)	49, 308
BssMI	GATC	2 cut(s)	172, 594
BssT1I	CCWWGG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	2 cut(s)	97, 231
Bst6I	CTCTTC	4 cut(s)	137, 360, 438, 686
BstC8I	GCNNGC	1 cut(s)	488
BstDEI	CTNAG	4 cut(s)	26, 137, 158, 355
BstENI	CCTNNNNNAGG	1 cut(s)	480
BstF5I	GGATG	2 cut(s)	70, 648
BstKTI	GATC	2 cut(s)	175, 597
BstMAI	GTCTC	2 cut(s)	556, 725
BstMBI	GATC	2 cut(s)	172, 594
BstMWI	GCNNNNNNNGC	1 cut(s)	466
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	308
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	5 cut(s)	27, 42, 106, 134, 668
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	2 cut(s)	172, 594
BstYI	RGATCY	2 cut(s)	172, 594
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	70, 648
BtsI	GCAGTG	3 cut(s)	507, 629, 641
BtsIMutI	CAGTG	4 cut(s)	507, 629, 641, 757
Cac8I	GCNNGC	1 cut(s)	488
Cfr13I	GGNCC	3 cut(s)	208, 515, 545
Csp6I	GTAC	1 cut(s)	739
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	1 cut(s)	61
CviQI	GTAC	1 cut(s)	739
DdeI	CTNAG	4 cut(s)	26, 137, 158, 355
DpnI	GATC	2 cut(s)	174, 596
DpnII	GATC	2 cut(s)	172, 594
Eam1104I	CTCTTC	4 cut(s)	137, 360, 438, 686
EarI	CTCTTC	4 cut(s)	137, 360, 438, 686
Eco130I	CCWWGG	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	725
Eco47I	GGWCC	2 cut(s)	515, 545
EcoNI	CCTNNNNNAGG	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	1 cut(s)	64
FaiI	YATR	4 cut(s)	40, 62, 90, 296
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	5 cut(s)	16, 31, 120, 123, 682
FokI	GGATG	2 cut(s)	77, 635
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	5 cut(s)	16, 31, 120, 123, 682
GluI	GCNGC	5 cut(s)	16, 31, 120, 123, 682
GsaI	CCCAGC	1 cut(s)	37
GsuI	CTGGAG	1 cut(s)	509
HaeIII	GGCC	1 cut(s)	209
Hin1II	CATG	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	4 cut(s)	326, 584, 659, 716
HphI	GGTGA	2 cut(s)	375, 609
Hpy166II	GTNNAC	2 cut(s)	394, 754
Hpy188I	TCNGA	4 cut(s)	194, 358, 715, 730
Hpy188III	TCNNGA	3 cut(s)	282, 526, 581
Hpy8I	GTNNAC	2 cut(s)	394, 754
HpyAV	CCTTC	2 cut(s)	542, 701
HpyCH4III	ACNGT	2 cut(s)	97, 231
HpyCH4V	TGCA	4 cut(s)	15, 92, 122, 684
HpyF10VI	GCNNNNNNNGC	1 cut(s)	466
HpyF3I	CTNAG	4 cut(s)	26, 137, 158, 355
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	172, 594
LmnI	GCTCC	4 cut(s)	100, 133, 277, 528
Lsp1109I	GCAGC	5 cut(s)	27, 42, 106, 134, 668
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	2 cut(s)	174, 596
MboI	GATC	2 cut(s)	172, 594
MboII	GAAGA	7 cut(s)	154, 311, 342, 372, 377, 425, 703
MflI	RGATCY	2 cut(s)	172, 594
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	6 cut(s)	285, 399, 444, 452, 666, 724
MlyI	GAGTC	3 cut(s)	320, 593, 653
MmeI	TCCRAC	2 cut(s)	274, 354
MseI	TTAA	2 cut(s)	665, 675
MspA1I	CMGCKG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	310
Mva1269I	GAATGC	2 cut(s)	76, 514
MvaI	CCWGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	1 cut(s)	466
NdeII	GATC	2 cut(s)	172, 594
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	459
NmuCI	GTSAC	1 cut(s)	604
PctI	GAATGC	2 cut(s)	76, 514
PfeI	GAWTC	1 cut(s)	716
PkrI	GCNGC	5 cut(s)	17, 32, 121, 124, 683
PleI	GAGTC	3 cut(s)	320, 592, 653
PpsI	GAGTC	3 cut(s)	320, 592, 653
Psp6I	CCWGG	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	3 cut(s)	208, 515, 545
PstI	CTGCAG	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	172, 594
PvuII	CAGCTG	1 cut(s)	33
RsaI	GTAC	1 cut(s)	740
RsaNI	GTAC	1 cut(s)	739
SaqAI	TTAA	2 cut(s)	665, 675
SatI	GCNGC	5 cut(s)	16, 31, 120, 123, 682
Sau3AI	GATC	2 cut(s)	172, 594
Sau96I	GGNCC	3 cut(s)	208, 515, 545
SchI	GAGTC	3 cut(s)	320, 593, 653
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	8 cut(s)	35, 105, 138, 168, 274, 492, 574, 604
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	2 cut(s)	515, 545
SmlI	CTYRAG	2 cut(s)	236, 581
SmoI	CTYRAG	2 cut(s)	236, 581
Sse9I	AATT	6 cut(s)	285, 399, 444, 452, 666, 724
StyD4I	CCNGG	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	2 cut(s)	97, 231
TasI	AATT	6 cut(s)	285, 399, 444, 452, 666, 724
TfiI	GAWTC	1 cut(s)	716
Tru1I	TTAA	2 cut(s)	665, 675
Tru9I	TTAA	2 cut(s)	665, 675
TscAI	CASTG	3 cut(s)	507, 636, 648
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	5 cut(s)	15, 30, 119, 122, 681
Tsp45I	GTSAC	1 cut(s)	604
TspRI	CASTG	3 cut(s)	507, 636, 648
VpaK11BI	GGWCC	2 cut(s)	515, 545
XagI	CCTNNNNNAGG	1 cut(s)	480
XapI	RAATTY	1 cut(s)	285
XcmI	CCANNNNNNNNNTGG	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.