Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0017814

Physical Location & Seq

Genomic Coordinates Reverse (-)

55746511 .. 55750264

Gene Structure 3754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0404800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGCACAAGATCGTCTTTCAGTACCGTAATGCGGCCGAAGCTCGCTGACGTCACCAACTTGCCGGCTCCTCCGAGAATTGAAAAGCCGCCCGAAATTTTCATGGGTGATAAGGACCGTGTTGAACAGCTCATGAGGGAAAGAATGGCTTTGATCAAACTCGTCAGCGAAAGGAATAAAATCATTGAATTGAGTGGAGCTGAGTTGCAGAAACTGCGAGTTAGTGTTCAGAAATTGCAGCTACAAAATTGGAATCTTGCTCGATCAAACAGCGTAATGTTAGCGGAGCTTAATTCAGGAAGAGACAAGGTAAAAACACTACAGCATGAACTTCTATGCAAGGAGGCTTTACTTAAGGCAAAGAATTTTGAAATGCAGGGAAAATCAGAGATGAAATGTCAAAATGCTGGCTCTAAGTTCAAGGAAGCAGAGGAGGCAACTTTGCATGAAGCGGATAATGATGACAAACCACGTATTGGCAACAAGAGGCGTGCAACAAGAAGTCAATCTCTGGGTGCTTCTACTAAATGCCAAAAGGTAGAGCAATCCCTCACTTTACAGGGAAAAGAAGAGATGAAATGTCAAAGTACTGGCCATCAGCTCAAGGAAGGAGAGGAGCCAGCTTTGCAGGAAGCTACTAAGGATGACAAACCATGTGTTGGCAACAAAATGCGTGCTACAAGAAGTCAATCTTTGGGCGCTTCTACTACATGCCAAAACATTGAACAGAAAGACAAGGTTGAGAATAGAAGGCGGAGTTTGAGGAGGCAGTCTTCTAGATTTAAATCCCATGAGGAAGAACAGACAGAAAACTTGTTTGAGATAGAAGCCAAATTTCCGGAAAATCCAATGCTTGAGGATGATCCCATTCCCTCCATTTCATCTACCAAGCAAGAAGAGAAAGAAGATAGCTGCGCTGCAAAGAGTGAAGGAGTATCACAAAGATCTTCAATTGGAAGACCATTGTGCAAGGCAGTTAAGAAGGATACCAAATTTCTCGAAAATTCAATCCCTAATGGCGATCCCACTCCCTTAATTTTATCTACCAAGAAAGAGAGAGAAGAAAGCGGTGCCCCAAAGAGTGAAGGAGTATCACAGAGATCTTCAATTGCAAGACCATTGCGGAAAGCAGTTGAGAAGGTTCAGTCCTACAAAGAACCTCCACTCCATGTCAAAATGCGGAGAACAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

397

Amino Acids

44.78

Weight (kDa)

9.31

Isoelectric Point (pI)

65.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Shugoshin_C	PF07557	371 - 395	5.9e-10	Shugoshin C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017814)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0070271 RchiOBHm_Chr5g0070281
rosa_laevigata	RLG00000036122
rosa_multiflora	Rmu_sc0009590.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010870
rosa_rugosa	Rorug05G0404700 Rorug05G0404800
rosa_samantha	Rh5AG460000 Rh5BG478600 Rh5CG502800 Rh5DG490500 Rh5DG490600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	1070
AccB7I	CCANNNNNTGG	2 cut(s)	476, 659
AccIII	TCCGGA	1 cut(s)	838
AciI	CCGC	8 cut(s)	34, 89, 284, 452, 754, 1068, 1123, 1180
AclWI	GGATC	2 cut(s)	857, 1016
AcoI	YGGCCR	2 cut(s)	35, 592
AcsI	RAATTY	5 cut(s)	96, 364, 833, 992, 1003
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	2 cut(s)	25, 589
AfiI	CCNNNNNNNGG	3 cut(s)	33, 476, 659
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	9 cut(s)	83, 125, 188, 371, 421, 725, 951, 1008, 1107
AloI	GAACNNNNNNTCC	2 cut(s)	1149, 1181
AluBI	AGCT	9 cut(s)	43, 130, 200, 241, 289, 601, 623, 635, 912
AluI	AGCT	9 cut(s)	43, 130, 200, 241, 289, 601, 623, 635, 912
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	857, 1016
AlwNI	CAGNNNCTG	1 cut(s)	214
Aor13HI	TCCGGA	1 cut(s)	838
AoxI	GGCC	2 cut(s)	35, 592
ApeKI	GCWGC	3 cut(s)	238, 912, 917
ApoI	RAATTY	5 cut(s)	96, 364, 833, 992, 1003
AspLEI	GCGC	2 cut(s)	701, 917
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	46, 119
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	2 cut(s)	8, 1075
BalI	TGGCCA	1 cut(s)	594
BanI	GGYRCC	1 cut(s)	1070
BbsI	GAAGAC	2 cut(s)	765, 964
BbvI	GCAGC	3 cut(s)	250, 899, 904
BccI	CCATC	1 cut(s)	603
BciVI	GTATCC	1 cut(s)	979
BclI	TGATCA	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	777
BfmI	CTRYAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	702
BfrI	CTTAAG	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	979
BglII	AGATCT	2 cut(s)	944, 1100
BisI	GCNGC	5 cut(s)	35, 89, 239, 913, 918
BlsI	GCNGC	5 cut(s)	36, 90, 240, 914, 919
BmcAI	AGTACT	1 cut(s)	589
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	3 cut(s)	69, 618, 1072
BpiI	GAAGAC	2 cut(s)	765, 964
BpuEI	CTTGAG	2 cut(s)	587, 875
BsaAI	YACGTR	1 cut(s)	473
BsaBI	GATNNNNATC	1 cut(s)	784
BsaHI	GRCGYC	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	838
BsaXI	ACNNNNNCTCC	2 cut(s)	1149, 1179
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 476, 659
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	595
Bse3DI	GCAATG	1 cut(s)	1118
Bse8I	GATNNNNATC	1 cut(s)	784
BseAI	TCCGGA	1 cut(s)	838
BseGI	GGATG	2 cut(s)	649, 865
BseJI	GATNNNNATC	1 cut(s)	784
BseLI	CCNNNNNNNGG	3 cut(s)	33, 476, 659
BseMI	GCAATG	1 cut(s)	1118
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	4 cut(s)	60, 446, 629, 778
BseSI	GKGCMC	2 cut(s)	8, 1075
BseX3I	CGGCCG	1 cut(s)	35
BseXI	GCAGC	3 cut(s)	250, 899, 904
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	37, 594
BshNI	GGYRCC	1 cut(s)	1070
BsiEI	CGRYCG	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	65, 839
BslI	CCNNNNNNNGG	3 cut(s)	33, 476, 659
BsmAI	GTCTC	1 cut(s)	297
BsnI	GGCC	2 cut(s)	37, 594
Bsp1286I	GDGCHC	2 cut(s)	8, 1075
Bsp13I	TCCGGA	1 cut(s)	838
Bsp143I	GATC	7 cut(s)	11, 153, 263, 862, 944, 1021, 1100
BspACI	CCGC	8 cut(s)	34, 89, 284, 452, 754, 1068, 1123, 1180
BspANI	GGCC	2 cut(s)	37, 594
BspCNI	CTCAG	1 cut(s)	193
BspEI	TCCGGA	1 cut(s)	838
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	3 cut(s)	69, 618, 1072
BspPI	GGATC	2 cut(s)	857, 1016
BspT107I	GGYRCC	1 cut(s)	1070
BspTI	CTTAAG	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	1118
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	595
BssAI	RCCGGY	1 cut(s)	64
BssMI	GATC	7 cut(s)	11, 153, 263, 862, 944, 1021, 1100
BssNI	GRCGYC	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	28, 119
Bst6I	CTCTTC	3 cut(s)	295, 564, 891
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	6 cut(s)	45, 66, 409, 492, 621, 675
BstDEI	CTNAG	3 cut(s)	201, 414, 639
BstF5I	GGATG	2 cut(s)	649, 865
BstH2I	RGCGCY	1 cut(s)	702
BstHHI	GCGC	2 cut(s)	701, 917
BstKTI	GATC	7 cut(s)	14, 156, 266, 865, 947, 1024, 1103
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	7 cut(s)	11, 153, 263, 862, 944, 1021, 1100
BstMCI	CGRYCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 214, 434, 625
BstNSI	RCATGY	1 cut(s)	714
BstSFI	CTRYAG	1 cut(s)	320
BstSLI	GKGCMC	2 cut(s)	8, 1075
BstV1I	GCAGC	3 cut(s)	250, 899, 904
BstV2I	GAAGAC	2 cut(s)	765, 964
BstX2I	RGATCY	2 cut(s)	944, 1100
BstYI	RGATCY	2 cut(s)	944, 1100
BstZI	CGGCCG	1 cut(s)	35
BsuI	GTATCC	1 cut(s)	979
BsuRI	GGCC	2 cut(s)	37, 594
BtsCI	GGATG	2 cut(s)	649, 865
Cac8I	GCNNGC	6 cut(s)	45, 66, 409, 492, 621, 675
CaiI	CAGNNNCTG	1 cut(s)	214
CciI	TCATGA	1 cut(s)	132
CfoI	GCGC	2 cut(s)	701, 917
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	24, 588
CviAII	CATG	8 cut(s)	103, 133, 326, 446, 654, 711, 791, 1169
CviQI	GTAC	2 cut(s)	24, 588
DdeI	CTNAG	3 cut(s)	201, 414, 639
DpnI	GATC	7 cut(s)	13, 155, 265, 864, 946, 1023, 1102
DpnII	GATC	7 cut(s)	11, 153, 263, 862, 944, 1021, 1100
DraI	TTTAAA	1 cut(s)	784
EaeI	YGGCCR	2 cut(s)	35, 592
EagI	CGGCCG	1 cut(s)	35
Eam1104I	CTCTTC	3 cut(s)	295, 564, 891
EarI	CTCTTC	3 cut(s)	295, 564, 891
EciI	GGCGGA	1 cut(s)	769
EclXI	CGGCCG	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	115
Eco52I	CGGCCG	1 cut(s)	35
FaeI	CATG	8 cut(s)	106, 136, 329, 449, 657, 714, 794, 1172
FaiI	YATR	9 cut(s)	104, 134, 327, 337, 447, 655, 712, 792, 1170
FalI	AAGNNNNNCTT	5 cut(s)	33, 133, 165, 676, 708
FatI	CATG	8 cut(s)	102, 132, 325, 445, 653, 710, 790, 1168
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	5 cut(s)	35, 89, 239, 913, 918
FokI	GGATG	2 cut(s)	656, 872
Fsp4HI	GCNGC	5 cut(s)	35, 89, 239, 913, 918
FspBI	CTAG	1 cut(s)	777
GlaI	GCGC	2 cut(s)	700, 916
GluI	GCNGC	5 cut(s)	35, 89, 239, 913, 918
HaeII	RGCGCY	1 cut(s)	702
HaeIII	GGCC	2 cut(s)	37, 594
HapII	CCGG	2 cut(s)	65, 839
HhaI	GCGC	2 cut(s)	701, 917
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	8 cut(s)	106, 136, 329, 449, 657, 714, 794, 1172
Hin6I	GCGC	2 cut(s)	699, 915
HinP1I	GCGC	2 cut(s)	699, 915
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	65, 839
HphI	GGTGA	2 cut(s)	46, 119
Hpy188I	TCNGA	3 cut(s)	75, 231, 388
Hpy188III	TCNNGA	5 cut(s)	133, 297, 777, 839, 998
HpyAV	CCTTC	6 cut(s)	602, 744, 923, 976, 1079, 1132
HpyCH4III	ACNGT	2 cut(s)	28, 119
HpyCH4IV	ACGT	2 cut(s)	51, 472
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 214, 434, 625
HpyF3I	CTNAG	3 cut(s)	201, 414, 639
HpySE526I	ACGT	2 cut(s)	51, 472
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	8 cut(s)	106, 136, 329, 449, 657, 714, 794, 1172
HspAI	GCGC	2 cut(s)	699, 915
Kpn2I	TCCGGA	1 cut(s)	838
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	7 cut(s)	11, 153, 263, 862, 944, 1021, 1100
LmnI	GCTCC	4 cut(s)	73, 197, 286, 616
Lsp1109I	GCAGC	3 cut(s)	250, 899, 904
MaeI	CTAG	1 cut(s)	777
MaeII	ACGT	2 cut(s)	51, 472
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	7 cut(s)	13, 155, 265, 864, 946, 1023, 1102
MboI	GATC	7 cut(s)	11, 153, 263, 862, 944, 1021, 1100
MfeI	CAATTG	2 cut(s)	951, 1107
MflI	RGATCY	2 cut(s)	944, 1100
MhlI	GDGCHC	2 cut(s)	8, 1075
MlsI	TGGCCA	1 cut(s)	594
MluNI	TGGCCA	1 cut(s)	594
Mox20I	TGGCCA	1 cut(s)	594
MroI	TCCGGA	1 cut(s)	838
MroNI	GCCGGC	1 cut(s)	64
MscI	TGGCCA	1 cut(s)	594
MseI	TTAA	5 cut(s)	291, 354, 783, 978, 1034
Msp20I	TGGCCA	1 cut(s)	594
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	2 cut(s)	65, 839
MunI	CAATTG	2 cut(s)	951, 1107
MwoI	GCNNNNNNNGC	4 cut(s)	40, 214, 434, 625
NaeI	GCCGGC	1 cut(s)	66
NdeII	GATC	7 cut(s)	11, 153, 263, 862, 944, 1021, 1100
NgoMIV	GCCGGC	1 cut(s)	64
NlaIII	CATG	8 cut(s)	106, 136, 329, 449, 657, 714, 794, 1172
NlaIV	GGNNCC	3 cut(s)	69, 618, 1072
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	714
PagI	TCATGA	1 cut(s)	132
PdiI	GCCGGC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	253
PflMI	CCANNNNNTGG	2 cut(s)	476, 659
PkrI	GCNGC	5 cut(s)	36, 90, 240, 914, 919
Ppu21I	YACGTR	1 cut(s)	473
PspN4I	GGNNCC	3 cut(s)	69, 618, 1072
PspPI	GGNCC	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	2 cut(s)	944, 1100
RsaI	GTAC	2 cut(s)	25, 589
RsaNI	GTAC	2 cut(s)	24, 588
SaqAI	TTAA	5 cut(s)	291, 354, 783, 978, 1034
SatI	GCNGC	5 cut(s)	35, 89, 239, 913, 918
Sau3AI	GATC	7 cut(s)	11, 153, 263, 862, 944, 1021, 1100
Sau96I	GGNCC	1 cut(s)	115
ScaI	AGTACT	1 cut(s)	589
SduI	GDGCHC	2 cut(s)	8, 1075
SfcI	CTRYAG	1 cut(s)	320
SinI	GGWCC	1 cut(s)	115
SmiI	ATTTAAAT	1 cut(s)	784
SmlI	CTYRAG	3 cut(s)	353, 602, 854
SmoI	CTYRAG	3 cut(s)	353, 602, 854
SsiI	CCGC	8 cut(s)	34, 89, 284, 452, 754, 1068, 1123, 1180
SspMI	CTAG	1 cut(s)	777
SwaI	ATTTAAAT	1 cut(s)	784
TaaI	ACNGT	2 cut(s)	28, 119
TaiI	ACGT	2 cut(s)	54, 475
TaqI	TCGA	2 cut(s)	262, 999
TatI	WGTACW	1 cut(s)	587
TauI	GCSGC	2 cut(s)	37, 91
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	5 cut(s)	291, 354, 783, 978, 1034
Tru9I	TTAA	5 cut(s)	291, 354, 783, 978, 1034
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	3 cut(s)	238, 912, 917
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	6 cut(s)	91, 342, 407, 462, 590, 870
Van91I	CCANNNNNTGG	2 cut(s)	476, 659
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	5 cut(s)	96, 364, 833, 992, 1003
XbaI	TCTAGA	1 cut(s)	776
XceI	RCATGY	1 cut(s)	714
XspI	CTAG	1 cut(s)	777
ZraI	GACGTC	1 cut(s)	52
ZrmI	AGTACT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.