Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0017814

Physical Location & Seq

Genomic Coordinates Reverse (-)

76153567 .. 76156951

Gene Structure 3385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG478600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGAGTCGGGAGAGCAGTAATAATTCACCTTCCGGCAGTAGTAAGGCACTATATTCTTGTTATGATGATGAGAGTGAGATTGGAATTAGTGATAGGAGAAAAAGGCATAAAGTAGAGAATAGTCATGAGTCGTCCACTACAAAGAAGGAGATCAAGGATTTTCCAAATCCTCAGAGTCATTATTATTCCAATTCTAGTGTGGGATTTGATTATATACGCGAAAGAGTAAGGAATCACAAGGATGAAATTGACCGTCTACGCAAGGCAAACACTAACATCTTATTGTCCTGCCACAAAAAACTCCACTTGGTTATTGACCTAGATCACACCCTGCTAAATACCACCAGTCTCTCCGATATGTCGCCGGAAGAAGAATATTTGAAGACCCAAACAGACTATTGTTTGCAGAATATCGATGCTTTCAAATACGAGTTACCTCCCAAACATAAGATGACCAAGCTGAGGCCCTTTGTCAGAACCTTTCTAAAGGAAGCCAGCAACATGTTTGACATGTACATATACACAGCTGGTTCACGTCCTTACGCATTGAAAATGGTTGAGCTCCTCGGAAAAGACTACTTCGGGTCTAGGGTTATATCTCGTGATGATTTTAAAGATAGCTCCAAAATGAAGTGTCTAGAACTTATGCATGGCAAAGAGTCTGCTGTTTTGATCCTTGATGATAACATGGATGCATGGACAAGGGAAAACCATAGCAACCTGATACTAATGCGAAAGTATCTATTCTTTAAATCCAAGTCGACCCCCTATAATCGAAATTTCAAGACTCTTTCTGAATTGAAAACTGATGAGATTGATGAGTTGTCTCAACAACCCTATCTTGCAAATATTCTCCAACTTCTGAAGCAAATCCACAGCATGTTCTTCGATGATGAAGCGACGACCGTTGGGGACAATCTTATCGACAGAGATGTGAGGAAGGTGTTGGAAACTCTTAGGAAGAATGTCTTGAAAGGGTGTAAGATTGTTTTCCCCCCTTTTCGGCCCGATATGATTCAGTGGTGGAATATGGCACAGCGTTTGGGAGCTACTTGTGTTAAGAAAGTGGATGATCCATCAGTGACACATGTGGTTGCGACGCAAACTGATGCTGGAAGGCCAATGGCGGTGGAGGACAACAAGTTCTTGGTCCATTTCCGGTGGATAGAAGAATCAAACTTTATGTGGCAAAAGCAACCTGAAGACAAGTTTCCTGTTCCTGTAATTGAGGTTGGCAAAATTGTCCAACCGGAAAGTGCCAGCCCTGAAATTACCAGCCCCGAAATTATCCTCCCTGGATTCTTCACCCGCCTCCGATCAGTATTCCTTCCCACATTCCTTGACCCGGTTACCTTGTTGGCTACAATAAGTGGCCTGATTGGCAGGAAGAGGAAGAGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

467

Amino Acids

54.19

Weight (kDa)

8.63

Isoelectric Point (pI)

61.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	102 - 268	3.4e-22	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017814)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0070271 RchiOBHm_Chr5g0070281
rosa_laevigata	RLG00000036122
rosa_multiflora	Rmu_sc0009590.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010870
rosa_rugosa	Rorug05G0404700 Rorug05G0404800
rosa_samantha	Rh5AG460000 Rh5BG478600 Rh5CG502800 Rh5DG490500 Rh5DG490600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	256, 761
AccII	CGCG	1 cut(s)	219
AciI	CCGC	2 cut(s)	1127, 1309
AclWI	GGATC	2 cut(s)	667, 1067
AcsI	RAATTY	1 cut(s)	778
AcuI	CTGAAG	2 cut(s)	884, 1221
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	3 cut(s)	462, 1002, 1345
AflIII	ACRYGT	3 cut(s)	501, 510, 1087
AgsI	TTSAA	6 cut(s)	382, 424, 550, 784, 802, 973
AjiI	CACGTC	1 cut(s)	536
AjnI	CCWGG	1 cut(s)	1294
AloI	GAACNNNNNNTCC	2 cut(s)	1127, 1159
AluBI	AGCT	5 cut(s)	460, 527, 562, 621, 1049
AluI	AGCT	5 cut(s)	460, 527, 562, 621, 1049
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	2 cut(s)	353, 831
AlwI	GGATC	2 cut(s)	667, 1067
AoxI	GGCC	4 cut(s)	464, 1004, 1118, 1372
ApoI	RAATTY	1 cut(s)	778
AspS9I	GGNCC	3 cut(s)	465, 1005, 1150
AsuC2I	CCSGG	1 cut(s)	1346
AsuHPI	GGTGA	2 cut(s)	18, 1297
AvaII	GGWCC	1 cut(s)	1150
BanII	GRGCYC	1 cut(s)	564
BauI	CACGAG	1 cut(s)	600
BbsI	GAAGAC	2 cut(s)	389, 1209
Bbv12I	GWGCWC	1 cut(s)	564
BbvCI	CCTCAGC	1 cut(s)	461
BccI	CCATC	1 cut(s)	1084
BcgI	CGANNNNNNTGC	2 cut(s)	868, 902
BciT130I	CCWGG	1 cut(s)	1296
BcnI	CCSGG	1 cut(s)	1346
BcoDI	GTCTC	2 cut(s)	353, 831
BfaI	CTAG	4 cut(s)	195, 320, 588, 638
BglI	GCCNNNNNGGC	1 cut(s)	1380
Bme1390I	CCNGG	2 cut(s)	1296, 1346
Bme18I	GGWCC	1 cut(s)	1150
BmgBI	CACGTC	1 cut(s)	536
BmgT120I	GGNCC	3 cut(s)	465, 1005, 1150
BmrFI	CCNGG	2 cut(s)	1296, 1346
BmsI	GCATC	3 cut(s)	406, 682, 1099
BpiI	GAAGAC	2 cut(s)	389, 1209
Bpu10I	CCTNAGC	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	1346
Bsa29I	ATCGAT	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	565, 1294
BsaWI	WCCGGW	2 cut(s)	1158, 1249
Bsc4I	CCNNNNNNNGG	3 cut(s)	462, 1002, 1345
Bse1I	ACTGG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	1296
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	565, 1294
BseGI	GGATG	3 cut(s)	247, 697, 1075
BseLI	CCNNNNNNNGG	3 cut(s)	462, 1002, 1345
BseMII	CTCAG	2 cut(s)	185, 452
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	554
Bsh1236I	CGCG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	906
BshFI	GGCC	4 cut(s)	466, 1006, 1120, 1374
BshVI	ATCGAT	1 cut(s)	414
BsiEI	CGRYCG	1 cut(s)	906
BsiHKAI	GWGCWC	1 cut(s)	564
BsiSI	CCGG	5 cut(s)	33, 365, 1159, 1250, 1346
BslFI	GGGAC	1 cut(s)	926
BslI	CCNNNNNNNGG	3 cut(s)	462, 1002, 1345
BsmAI	GTCTC	2 cut(s)	353, 831
BsmFI	GGGAC	1 cut(s)	926
BsnI	GGCC	4 cut(s)	466, 1006, 1120, 1374
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	5 cut(s)	150, 322, 672, 1072, 1316
BspACI	CCGC	2 cut(s)	1127, 1309
BspANI	GGCC	4 cut(s)	466, 1006, 1120, 1374
BspCNI	CTCAG	2 cut(s)	184, 453
BspDI	ATCGAT	1 cut(s)	414
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	124
BspPI	GGATC	2 cut(s)	667, 1067
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	565, 1294
BssMI	GATC	5 cut(s)	150, 322, 672, 1072, 1316
BssSI	CACGAG	1 cut(s)	600
Bst2BI	CACGAG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	1296
Bst4CI	ACNGT	2 cut(s)	254, 907
Bst6I	CTCTTC	2 cut(s)	1382, 1388
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	2 cut(s)	496, 1261
BstDEI	CTNAG	3 cut(s)	171, 461, 956
BstEII	GGTNACC	1 cut(s)	1348
BstF5I	GGATG	3 cut(s)	247, 697, 1075
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	5 cut(s)	153, 325, 675, 1075, 1319
BstMAI	GTCTC	2 cut(s)	353, 831
BstMBI	GATC	5 cut(s)	150, 322, 672, 1072, 1316
BstMCI	CGRYCG	1 cut(s)	906
BstMWI	GCNNNNNNNGC	1 cut(s)	1380
BstNI	CCWGG	1 cut(s)	1296
BstNSI	RCATGY	4 cut(s)	505, 514, 883, 1091
BstPI	GGTNACC	1 cut(s)	1348
BstSCI	CCNGG	2 cut(s)	1294, 1344
BstUI	CGCG	1 cut(s)	219
BstV2I	GAAGAC	2 cut(s)	389, 1209
Bsu15I	ATCGAT	1 cut(s)	414
BsuRI	GGCC	4 cut(s)	466, 1006, 1120, 1374
BsuTUI	ATCGAT	1 cut(s)	414
BtrI	CACGTC	1 cut(s)	536
BtsCI	GGATG	3 cut(s)	247, 697, 1075
BtsIMutI	CAGTG	2 cut(s)	1025, 1086
Cac8I	GCNNGC	2 cut(s)	496, 1261
CciI	TCATGA	1 cut(s)	124
Cfr13I	GGNCC	3 cut(s)	465, 1005, 1150
ClaI	ATCGAT	1 cut(s)	414
CseI	GACGC	1 cut(s)	1108
Csp6I	GTAC	1 cut(s)	514
CspCI	CAANNNNNGTGG	4 cut(s)	1110, 1145, 1321, 1356
CviAII	CATG	8 cut(s)	125, 502, 511, 650, 688, 696, 880, 1088
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	3 cut(s)	171, 461, 956
DpnI	GATC	5 cut(s)	152, 324, 674, 1074, 1318
DpnII	GATC	5 cut(s)	150, 322, 672, 1072, 1316
DraI	TTTAAA	2 cut(s)	613, 751
Eam1104I	CTCTTC	2 cut(s)	1382, 1388
EarI	CTCTTC	2 cut(s)	1382, 1388
Ecl136II	GAGCTC	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	1150
Eco53kI	GAGCTC	1 cut(s)	562
Eco57I	CTGAAG	2 cut(s)	884, 1221
Eco91I	GGTNACC	1 cut(s)	1348
EcoICRI	GAGCTC	1 cut(s)	562
EcoO109I	RGGNCCY	1 cut(s)	465
EcoO65I	GGTNACC	1 cut(s)	1348
EcoRII	CCWGG	1 cut(s)	1294
EcoT22I	ATGCAT	2 cut(s)	651, 697
EcoT38I	GRGCYC	1 cut(s)	564
FaeI	CATG	8 cut(s)	128, 505, 514, 653, 691, 699, 883, 1091
FalI	AAGNNNNNCTT	2 cut(s)	953, 985
FaqI	GGGAC	1 cut(s)	926
FatI	CATG	8 cut(s)	124, 501, 510, 649, 687, 695, 879, 1087
FauI	CCCGC	1 cut(s)	1316
FblI	GTMKAC	2 cut(s)	256, 761
FokI	GGATG	3 cut(s)	254, 704, 1082
FriOI	GRGCYC	1 cut(s)	564
FspBI	CTAG	4 cut(s)	195, 320, 588, 638
HaeIII	GGCC	4 cut(s)	466, 1006, 1120, 1374
HapII	CCGG	5 cut(s)	33, 365, 1159, 1250, 1346
HgaI	GACGC	1 cut(s)	1108
Hin1II	CATG	8 cut(s)	128, 505, 514, 653, 691, 699, 883, 1091
HincII	GTYRAC	1 cut(s)	762
HindII	GTYRAC	1 cut(s)	762
HinfI	GANTC	9 cut(s)	4, 128, 175, 232, 659, 787, 1015, 1172, 1299
HpaII	CCGG	5 cut(s)	33, 365, 1159, 1250, 1346
HphI	GGTGA	2 cut(s)	18, 1297
Hpy166II	GTNNAC	4 cut(s)	135, 257, 533, 762
Hpy188I	TCNGA	7 cut(s)	174, 355, 476, 569, 796, 864, 1316
Hpy188III	TCNNGA	6 cut(s)	8, 125, 602, 638, 784, 970
Hpy8I	GTNNAC	4 cut(s)	135, 257, 533, 762
Hpy99I	CGWCG	2 cut(s)	904, 1102
HpyAV	CCTTC	5 cut(s)	39, 139, 934, 1110, 1337
HpyCH4III	ACNGT	2 cut(s)	254, 907
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	4 cut(s)	406, 649, 695, 845
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1380
HpyF3I	CTNAG	3 cut(s)	171, 461, 956
HpySE526I	ACGT	1 cut(s)	535
Hsp92II	CATG	8 cut(s)	128, 505, 514, 653, 691, 699, 883, 1091
Kzo9I	GATC	5 cut(s)	150, 322, 672, 1072, 1316
LmnI	GCTCC	3 cut(s)	567, 626, 1046
LweI	GCATC	3 cut(s)	406, 682, 1099
MaeI	CTAG	4 cut(s)	195, 320, 588, 638
MaeII	ACGT	1 cut(s)	535
MaeIII	GTNAC	3 cut(s)	432, 1081, 1348
MalI	GATC	5 cut(s)	152, 324, 674, 1074, 1318
MboI	GATC	5 cut(s)	150, 322, 672, 1072, 1316
MboII	GAAGA	9 cut(s)	380, 383, 394, 877, 973, 1181, 1214, 1294, 1399
MhlI	GDGCHC	1 cut(s)	564
MlyI	GAGTC	5 cut(s)	13, 137, 184, 668, 781
MmeI	TCCRAC	3 cut(s)	880, 927, 1270
Mph1103I	ATGCAT	2 cut(s)	651, 697
MseI	TTAA	3 cut(s)	612, 750, 1059
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	5 cut(s)	33, 365, 1159, 1250, 1346
MspR9I	CCNGG	2 cut(s)	1296, 1346
MvaI	CCWGG	1 cut(s)	1296
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	1380
NciI	CCSGG	1 cut(s)	1346
NdeII	GATC	5 cut(s)	150, 322, 672, 1072, 1316
NlaIII	CATG	8 cut(s)	128, 505, 514, 653, 691, 699, 883, 1091
NmuCI	GTSAC	1 cut(s)	1081
NsiI	ATGCAT	2 cut(s)	651, 697
NspI	RCATGY	4 cut(s)	505, 514, 883, 1091
PagI	TCATGA	1 cut(s)	124
PciI	ACATGT	3 cut(s)	501, 510, 1087
PfeI	GAWTC	4 cut(s)	232, 1015, 1172, 1299
PleI	GAGTC	5 cut(s)	12, 136, 183, 667, 781
PpsI	GAGTC	5 cut(s)	12, 136, 183, 667, 781
PscI	ACATGT	3 cut(s)	501, 510, 1087
Psp124BI	GAGCTC	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	1294
PspEI	GGTNACC	1 cut(s)	1348
PspGI	CCWGG	1 cut(s)	1294
PspPI	GGNCC	3 cut(s)	465, 1005, 1150
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	564
SalI	GTCGAC	1 cut(s)	760
SaqAI	TTAA	3 cut(s)	612, 750, 1059
Sau3AI	GATC	5 cut(s)	150, 322, 672, 1072, 1316
Sau96I	GGNCC	3 cut(s)	465, 1005, 1150
SchI	GAGTC	5 cut(s)	13, 137, 184, 668, 781
ScrFI	CCNGG	2 cut(s)	1296, 1346
SduI	GDGCHC	1 cut(s)	564
SfaNI	GCATC	3 cut(s)	406, 682, 1099
SinI	GGWCC	1 cut(s)	1150
SmiMI	CAYNNNNRTG	1 cut(s)	240
SsiI	CCGC	2 cut(s)	1127, 1309
SspI	AATATT	2 cut(s)	377, 850
SspMI	CTAG	4 cut(s)	195, 320, 588, 638
SstI	GAGCTC	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	1294, 1344
TaaI	ACNGT	2 cut(s)	254, 907
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	5 cut(s)	414, 761, 775, 888, 924
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	4 cut(s)	232, 1015, 1172, 1299
Tru1I	TTAA	3 cut(s)	612, 750, 1059
Tru9I	TTAA	3 cut(s)	612, 750, 1059
TscAI	CASTG	2 cut(s)	1025, 1086
TseFI	GTSAC	1 cut(s)	1081
Tsp45I	GTSAC	1 cut(s)	1081
TspDTI	ATGAA	3 cut(s)	258, 644, 909
TspRI	CASTG	2 cut(s)	1025, 1086
VpaK11BI	GGWCC	1 cut(s)	1150
XapI	RAATTY	1 cut(s)	778
XbaI	TCTAGA	1 cut(s)	637
XceI	RCATGY	4 cut(s)	505, 514, 883, 1091
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmiI	GTMKAC	2 cut(s)	256, 761
XspI	CTAG	4 cut(s)	195, 320, 588, 638
Zsp2I	ATGCAT	2 cut(s)	651, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.