RchiOBHm_Chr5g0081301

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
87296503 .. 87296881
379 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35555

Sequence Viewer

Length: 258 bp
ATGACTCCTTCATTTTTTTCTCTGTTACCCGACACCTGTTTTTCTCTGTTACCCGACACCTGTCTACCGTCTCAAAACTCCCGCGTCTTTCTTCTCGACACCTGGTCTGCTGCTCAGTCTTCGCTACTTCGCTGCACAGAGAGGTGGAGAAAGAGAGAGAGAGAGAGAGAGCGAAGAAGGTGGTACTGTTCGTTGGCATCTACGATTCGGATTCTATCTACATGGAGAGAGGCGTCTATCTACAGTAATATTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

10.11

Weight (kDa)

9.34

Isoelectric Point (pI)

71.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 64
AccII CGCG 1 cut(s) 84
AciI CCGC 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 1 cut(s) 185
AhdI GACNNNNNGTC 1 cut(s) 103
AjnI CCWGG 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 75
ApeKI GCWGC 2 cut(s) 110, 132
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 2 cut(s) 97, 119
BciT130I CCWGG 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 241
BisI GCNGC 2 cut(s) 111, 133
BlsI GCNGC 2 cut(s) 112, 134
Bme1390I CCNGG 1 cut(s) 103
BmeRI GACNNNNNGTC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 1 cut(s) 206
BoxI GACNNNNGTC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 111
BsaHI GRCGYC 1 cut(s) 233
BseBI CCWGG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 128
BseXI GCAGC 2 cut(s) 97, 119
BsgI GTGCAG 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 84
BsmAI GTCTC 1 cut(s) 75
BsmBI CGTCTC 1 cut(s) 75
BspACI CCGC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 1 cut(s) 84
BssNI GRCGYC 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 3 cut(s) 69, 188, 245
BstACI GRCGYC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 103
BstPAI GACNNNNGTC 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 241
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 97, 119
BstV2I GAAGAC 1 cut(s) 111
CseI GACGC 2 cut(s) 73, 222
CsiI ACCWGGT 1 cut(s) 101
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 222
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 114
DriI GACNNNNNGTC 1 cut(s) 103
Eam1105I GACNNNNNGTC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 1 cut(s) 225
FaiI YATR 1 cut(s) 223
FatI CATG 1 cut(s) 221
FauI CCCGC 1 cut(s) 89
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 111, 133
Fsp4HI GCNGC 2 cut(s) 111, 133
GluI GCNGC 2 cut(s) 111, 133
HgaI GACGC 2 cut(s) 73, 222
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 1 cut(s) 225
HinfI GANTC 3 cut(s) 4, 205, 211
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 18, 171
HpyCH4III ACNGT 3 cut(s) 69, 188, 245
HpyCH4V TGCA 1 cut(s) 135
HpyF3I CTNAG 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 1 cut(s) 225
LpnPI CCDG 4 cut(s) 49, 73, 88, 115
Lsp1109I GCAGC 2 cut(s) 97, 119
LweI GCATC 1 cut(s) 206
MabI ACCWGGT 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 24, 48
MboII GAAGA 3 cut(s) 83, 111, 186
MnlI CCTC 2 cut(s) 135, 223
MspR9I CCNGG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 103
MvnI CGCG 1 cut(s) 84
NlaIII CATG 1 cut(s) 225
PfeI GAWTC 2 cut(s) 205, 211
PkrI GCNGC 2 cut(s) 112, 134
PshAI GACNNNNGTC 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SatI GCNGC 2 cut(s) 111, 133
ScrFI CCNGG 1 cut(s) 103
SetI ASST 5 cut(s) 38, 62, 104, 146, 182
SexAI ACCWGGT 1 cut(s) 101
SfaNI GCATC 1 cut(s) 206
SfcI CTRYAG 1 cut(s) 241
SsiI CCGC 1 cut(s) 82
SspI AATATT 1 cut(s) 250
StyD4I CCNGG 1 cut(s) 101
TaaI ACNGT 3 cut(s) 69, 188, 245
TaqI TCGA 1 cut(s) 96
TfiI GAWTC 2 cut(s) 205, 211
TseI GCWGC 2 cut(s) 110, 132
XmiI GTMKAC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.