RLG00000008382

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018196
Physical Location & Seq
Forward (+)
29871367 .. 29872027
661 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008382

Sequence Viewer

Length: 360 bp
ATGACTCCTTCATTTTTTTCTCTGTTACCCGACACCTGTTTTTCTCTGTTACTCGACACCTGTCTACCATCTCAAAACTCCCGCGTCTTTCTTCTCGACACCTGGTCTGCTGCTCAGTCTTCGCTACTTCGCTGCACAGAGAGCTGGAGAAAGAGAGAGAGCGACGAGGGTGGTACTGTTCGTTGGCATCTACGATTAGGATTCAATTTCCCTGCAAAGCGGACAGTTCAACGAAAGAGCCCGGTTTCAATCCCAGTGGCTGCTCTTGACCTTGATAATGAAGAAACTACAAAAGAAGAGAGTGAGAAAGAGAAGGTAGAGCCTGAAATTGTTGTTGTGAATGAAGAAAAGAAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92 zf-C3HC4

Protein Analysis

120

Amino Acids

13.57

Weight (kDa)

5.25

Isoelectric Point (pI)

67.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 64
AccII CGCG 1 cut(s) 84
AciI CCGC 2 cut(s) 82, 220
AfaI GTAC 1 cut(s) 175
AgsI TTSAA 3 cut(s) 205, 230, 249
AhdI GACNNNNNGTC 1 cut(s) 103
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
AlwNI CAGNNNCTG 1 cut(s) 260
ApeKI GCWGC 3 cut(s) 110, 132, 260
AsuC2I CCSGG 1 cut(s) 242
BanII GRGCYC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 3 cut(s) 97, 119, 247
BccI CCATC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 103
BcnI CCSGG 1 cut(s) 242
BisI GCNGC 3 cut(s) 111, 133, 261
BlsI GCNGC 3 cut(s) 112, 134, 262
Bme1390I CCNGG 2 cut(s) 103, 242
BmeRI GACNNNNNGTC 1 cut(s) 103
BmrFI CCNGG 2 cut(s) 103, 242
BmrI ACTGGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 196
BmuI ACTGGG 1 cut(s) 248
BoxI GACNNNNGTC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 166
BpuMI CCSGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 254
BseBI CCWGG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 254
BseXI GCAGC 3 cut(s) 97, 119, 247
BsgI GTGCAG 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 84
BsiSI CCGG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 242
BspACI CCGC 2 cut(s) 82, 220
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 1 cut(s) 84
BsrI ACTGG 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 178, 226
Bst6I CTCTTC 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 103
BstPAI GACNNNNGTC 1 cut(s) 60
BstSCI CCNGG 2 cut(s) 101, 240
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 3 cut(s) 97, 119, 247
BstV2I GAAGAC 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 261
CaiI CAGNNNCTG 1 cut(s) 260
CseI GACGC 1 cut(s) 73
CsiI ACCWGGT 1 cut(s) 101
Csp6I GTAC 1 cut(s) 174
CspCI CAANNNNNGTGG 2 cut(s) 237, 272
CviAII CATG 1 cut(s) 357
CviJI RGCY 4 cut(s) 144, 240, 260, 322
CviKI_1 RGCY 4 cut(s) 144, 240, 260, 322
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 1 cut(s) 114
DriI GACNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 291
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 291
Eco24I GRGCYC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 101
EcoT38I GRGCYC 1 cut(s) 242
FaeI CATG 1 cut(s) 360
FaiI YATR 1 cut(s) 358
FatI CATG 1 cut(s) 356
FauI CCCGC 1 cut(s) 89
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 111, 133, 261
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 3 cut(s) 111, 133, 261
GluI GCNGC 3 cut(s) 111, 133, 261
GsuI CTGGAG 1 cut(s) 166
HapII CCGG 1 cut(s) 242
HgaI GACGC 1 cut(s) 73
Hin1II CATG 1 cut(s) 360
HinfI GANTC 2 cut(s) 4, 201
HpaII CCGG 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 65
Hpy188III TCNNGA 2 cut(s) 95, 266
Hpy8I GTNNAC 1 cut(s) 65
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 18, 307
HpyCH4III ACNGT 2 cut(s) 178, 226
HpyCH4V TGCA 2 cut(s) 135, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 1 cut(s) 360
LpnPI CCDG 9 cut(s) 49, 73, 88, 115, 130, 225, 255, 267, 336
Lsp1109I GCAGC 3 cut(s) 97, 119, 247
LweI GCATC 1 cut(s) 196
MabI ACCWGGT 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 24, 48
MboII GAAGA 5 cut(s) 83, 111, 293, 308, 356
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 2 cut(s) 205, 327
MnlI CCTC 1 cut(s) 160
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 103, 242
MvaI CCWGG 1 cut(s) 103
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 141
NciI CCSGG 1 cut(s) 242
NlaIII CATG 1 cut(s) 360
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 3 cut(s) 112, 134, 262
PshAI GACNNNNGTC 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 260
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SatI GCNGC 3 cut(s) 111, 133, 261
ScrFI CCNGG 2 cut(s) 103, 242
SduI GDGCHC 1 cut(s) 242
SetI ASST 6 cut(s) 38, 62, 104, 146, 273, 318
SexAI ACCWGGT 1 cut(s) 101
SfaNI GCATC 1 cut(s) 196
Sse9I AATT 2 cut(s) 205, 327
SsiI CCGC 2 cut(s) 82, 220
StyD4I CCNGG 2 cut(s) 101, 240
TaaI ACNGT 2 cut(s) 178, 226
TaqI TCGA 2 cut(s) 54, 96
TasI AATT 2 cut(s) 205, 327
TfiI GAWTC 1 cut(s) 201
TscAI CASTG 1 cut(s) 261
TseI GCWGC 3 cut(s) 110, 132, 260
TspDTI ATGAA 2 cut(s) 294, 357
TspRI CASTG 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.