Rh4CG116000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
22007117 .. 22016713
9597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG116000.1

Sequence Viewer

Length: 288 bp
ATGATAATACCCAGGGTACCCACCCATCAATTCATCAAGAAGAAAGCAGAGAATTCAGTGAAGGTACAGACCATCGTGGGTGTTTCAATCCCAGTGGCTGCTCTTGACCTTGATAATGAAGACACTACAAAAGAAGAGAGTGAGAAAGAGAAGGTAGAGTCTGAAATTTTTGTTGTGAATGAAGAAAAGAGAACAGGAGAAGATGAGAAGGGTGAGAGCAAAGCCAAACATTGGCAAGCAAGGAATGTTCCCATCACAGATATTGAGCCCAAGCTCTATGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.85

Weight (kDa)

5.02

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 16
AccB7I CCANNNNNTGG 1 cut(s) 231
AcsI RAATTY 2 cut(s) 52, 165
AfaI GTAC 2 cut(s) 18, 66
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 1 cut(s) 87
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
AlwNI CAGNNNCTG 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 2 cut(s) 52, 165
Asp718I GGTACC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 224
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 85
BccI CCATC 3 cut(s) 33, 80, 260
BciT130I CCWGG 1 cut(s) 13
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 13
BmrI ACTGGG 1 cut(s) 86
BmuI ACTGGG 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 11, 12
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse1I ACTGG 1 cut(s) 92
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 2 cut(s) 11, 12
BseLI CCNNNNNNNGG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 85
BshNI GGYRCC 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 16
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 11, 12
Bst2UI CCWGG 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 237
BstNI CCWGG 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 85
BstV2I GAAGAC 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 63, 99
Cac8I GCNNGC 1 cut(s) 237
CaiI CAGNNNCTG 1 cut(s) 98
Csp6I GTAC 2 cut(s) 17, 65
CspCI CAANNNNNGTGG 2 cut(s) 75, 110
CviJI RGCY 4 cut(s) 98, 224, 268, 274
CviKI_1 RGCY 4 cut(s) 98, 224, 268, 274
CviQI GTAC 2 cut(s) 17, 65
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 270
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 270
FaiI YATR 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 99
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
HinfI GANTC 1 cut(s) 158
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 2 cut(s) 37, 104
HpyAV CCTTC 3 cut(s) 55, 145, 202
KpnI GGTACC 1 cut(s) 20
LpnPI CCDG 3 cut(s) 25, 105, 180
Lsp1109I GCAGC 1 cut(s) 85
MboII GAAGA 5 cut(s) 52, 131, 146, 194, 212
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 3 cut(s) 29, 52, 165
MlyI GAGTC 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 13
MvaI CCWGG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 18
PasI CCCWGGG 1 cut(s) 12
PflMI CCANNNNNTGG 1 cut(s) 231
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 18
PstNI CAGNNNCTG 1 cut(s) 98
RsaI GTAC 2 cut(s) 18, 66
RsaNI GTAC 2 cut(s) 17, 65
SatI GCNGC 1 cut(s) 99
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 1 cut(s) 270
SetI ASST 4 cut(s) 66, 111, 156, 276
Sse9I AATT 3 cut(s) 29, 52, 165
StyD4I CCNGG 1 cut(s) 11
TasI AATT 3 cut(s) 29, 52, 165
TscAI CASTG 2 cut(s) 63, 99
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 3 cut(s) 22, 132, 195
TspRI CASTG 2 cut(s) 63, 99
Van91I CCANNNNNTGG 1 cut(s) 231
XapI RAATTY 2 cut(s) 52, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.