Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018196

Physical Location & Seq

Genomic Coordinates Forward (+)

1725462 .. 1730816

Gene Structure 5355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015830

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCTTCTCATCTTGGCTACCAAAAAAGTCCACCATAGAAGCACCCAAAGCTTCAGTTACAGAAAGCCACCCATTACTCTTCCAAAGATCTTTGCTTTCAACTCTTTCCTCAATCGAGGCCACTTTGCTTGCATCAAGAAGCTTCGACCAGCCAAGAAGGTACCAGCTCTGGAGCACAATGTAAAGATACAAGAATTTAGCTACCATTTGACTGGATTCAGTGGATTACTATTTGATAGAGTGCGCAAGAATTCCTCTGCTGAGGTTGAATCAATCAGTAACTCGACAAAGCGGACTGTTCAGCGAAAGAGCCCGGTTTCAATCCCAGTGGCTGCTCTTGACCTTGATAATGAAGAAACTACAAAAGAAGAGAGTGAGAAAGAGAAGGTAGAGCCTGAAATTGTTGTTGTGAATGAAGAAAAGAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF740

Protein Analysis

144

Amino Acids

16.3

Weight (kDa)

9.68

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018196)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0007251 RchiOBHm_Chr5g0081301 RchiOBHm_Chr5g0081311
rosa_laevigata	RLG00000008382 RLG00000015829 RLG00000015830
rosa_roxburghii	Rroxscaffold_4G00304870 Rroxscaffold_4G00312480 Rroxscaffold_5G00350190
rosa_samantha	Rh4CG116000
rosa_wichuraiana	Rw7G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	245
Acc65I	GGTACC	1 cut(s)	160
AccB1I	GGYRCC	1 cut(s)	160
AciI	CCGC	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	194, 250
AcuI	CTGAAG	1 cut(s)	37
AfaI	GTAC	1 cut(s)	162
AgsI	TTSAA	3 cut(s)	100, 269, 321
AluBI	AGCT	4 cut(s)	51, 142, 167, 201
AluI	AGCT	4 cut(s)	51, 142, 167, 201
Alw21I	GWGCWC	1 cut(s)	177
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	2 cut(s)	194, 250
Asp718I	GGTACC	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	246
AsuC2I	CCSGG	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	177
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	314
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	314
BmrI	ACTGGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	191
Bpu10I	CCTNAGC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	217, 326
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	217, 326
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	314
BsnI	GGCC	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	177, 314
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	160
BsrI	ACTGG	2 cut(s)	217, 326
BssMI	GATC	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	2 cut(s)	84, 363
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	87
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	226, 333
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	161
CspCI	CAANNNNNGTGG	4 cut(s)	110, 145, 309, 344
CviAII	CATG	1 cut(s)	429
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	84, 363
EarI	CTCTTC	2 cut(s)	84, 363
Eco24I	GRGCYC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	314
FaeI	CATG	1 cut(s)	432
FaiI	YATR	2 cut(s)	36, 430
FatI	CATG	1 cut(s)	428
Fnu4HI	GCNGC	1 cut(s)	333
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	1 cut(s)	333
FspI	TGCGCA	1 cut(s)	245
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	1 cut(s)	314
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	432
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HindIII	AAGCTT	2 cut(s)	49, 140
HinfI	GANTC	2 cut(s)	216, 269
HpaII	CCGG	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188III	TCNNGA	3 cut(s)	136, 170, 338
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	151, 379
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	432
HspAI	GCGC	1 cut(s)	244
KpnI	GGTACC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	7 cut(s)	155, 162, 177, 198, 327, 339, 408
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	56, 278
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	4 cut(s)	71, 365, 380, 428
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	177, 314
MluCI	AATT	3 cut(s)	194, 250, 399
MnlI	CCTC	4 cut(s)	110, 119, 256, 265
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	48
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	1 cut(s)	432
NlaIV	GGNNCC	1 cut(s)	162
NsbI	TGCGCA	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	216, 269
PkrI	GCNGC	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	2 cut(s)	177, 314
SetI	ASST	8 cut(s)	53, 144, 162, 169, 203, 267, 345, 390
SfaNI	GCATC	1 cut(s)	141
Sse9I	AATT	3 cut(s)	194, 250, 399
SsiI	CCGC	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	3 cut(s)	115, 145, 284
TasI	AATT	3 cut(s)	194, 250, 399
TfiI	GAWTC	2 cut(s)	216, 269
TscAI	CASTG	2 cut(s)	226, 333
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	2 cut(s)	366, 429
TspRI	CASTG	2 cut(s)	226, 333
XapI	RAATTY	2 cut(s)	194, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.