Rroxscaffold_5G00350190

Glycosyl transferase family 2

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
23877952 .. 23883292
5341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350190.1

Sequence Viewer

Length: 279 bp
ATGTTCTTTCTTTTGTTTGATTCAAGATTTCGTGGGTGTTTCAGAAAGCGGAGAGTTCAGCGAAAGAGCCCGGTTTCAATCCCAGTGGCTGCTCTTGAGCTTGATAATGAAGAAACTACGAAAGAAGAGAGTGAGAAAGAGAAGGTAGAGCCTAAAATTGTTGTTGTGAATGAAGAAAAGAAAACAGGAGAAGAAGAGAAGAAGGGTGAGAGGTCTGGTGCTTCGTGCTCAAGCTCGCATCTTCCTTGCATGGATAAGCTCAGGGATGAGCTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

92

Amino Acids

10.59

Weight (kDa)

6.61

Isoelectric Point (pI)

67.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 49
AgsI TTSAA 2 cut(s) 24, 78
AluBI AGCT 4 cut(s) 100, 234, 259, 271
AluI AGCT 4 cut(s) 100, 234, 259, 271
Alw21I GWGCWC 1 cut(s) 230
AlwNI CAGNNNCTG 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 218
BanII GRGCYC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 76
BcnI CCSGG 1 cut(s) 71
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 77
Bpu10I CCTNAGC 1 cut(s) 260
BpuEI CTTGAG 2 cut(s) 116, 214
BpuMI CCSGG 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 230
BsiSI CCGG 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 71, 230
BspACI CCGC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 273
BsrI ACTGG 1 cut(s) 83
Bst6I CTCTTC 2 cut(s) 120, 189
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 89
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 1 cut(s) 250
CviJI RGCY 7 cut(s) 69, 89, 100, 151, 234, 259, 271
CviKI_1 RGCY 7 cut(s) 69, 89, 100, 151, 234, 259, 271
DdeI CTNAG 1 cut(s) 260
Eam1104I CTCTTC 2 cut(s) 120, 189
EarI CTCTTC 2 cut(s) 120, 189
Eco24I GRGCYC 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 71
FaeI CATG 1 cut(s) 253
FaiI YATR 1 cut(s) 251
FatI CATG 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 90
HapII CCGG 1 cut(s) 71
Hin1II CATG 1 cut(s) 253
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 3 cut(s) 24, 95, 276
HpyAV CCTTC 2 cut(s) 136, 196
HpyCH4V TGCA 1 cut(s) 249
HpyF3I CTNAG 1 cut(s) 260
Hsp92II CATG 1 cut(s) 253
LpnPI CCDG 5 cut(s) 84, 96, 171, 201, 247
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 247
MboII GAAGA 7 cut(s) 122, 137, 185, 203, 206, 211, 233
MhlI GDGCHC 2 cut(s) 71, 230
MluCI AATT 1 cut(s) 156
MnlI CCTC 1 cut(s) 204
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 71
NciI CCSGG 1 cut(s) 71
NlaIII CATG 1 cut(s) 253
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 91
PstNI CAGNNNCTG 1 cut(s) 89
SatI GCNGC 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 2 cut(s) 71, 230
SetI ASST 6 cut(s) 102, 147, 215, 236, 261, 273
SfaNI GCATC 1 cut(s) 247
SmlI CTYRAG 2 cut(s) 95, 229
SmoI CTYRAG 2 cut(s) 95, 229
Sse9I AATT 1 cut(s) 156
SsiI CCGC 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 69
TasI AATT 1 cut(s) 156
TfiI GAWTC 1 cut(s) 20
TscAI CASTG 1 cut(s) 90
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 2 cut(s) 123, 186
TspRI CASTG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.