RchiOBHm_Chr5g0083151

nucleic acid binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018194
Physical Location & Seq
Forward (+)
88849728 .. 88855676
5949 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35730

Sequence Viewer

Length: 1104 bp
ATGCGGACACTGTTTGTAACTCAGCTGCATGCAAGTGTGAGCGAGAAGAGGCTCAAATCAGTATTTGAGAAATATGGTCCCGTTAAAAGGACGAAAATTATTCCTTACCCGTGGAAGAAGAATTGTGCTTTTGTGGAGTTTGAGCAGGAGAGTGATAGTCAAGATGCGTTGGTGGATATGCGTTTCAAATTCTTCCCGGACAAATGGCAATGGAAAGTGTGCTATGCTCACTCGGATGATCCTGGAAAGAGTGTTGTAGAAGAGAATGTTGAAGAAGTTGATTGGCAACTAGTGCCTCAATCGTCATCCGACTCAAGAAAGGCTCTTGAAGAAGATCATTCCTCATCGTACTCTGGGGTCACACCAACATCAACCACTTCTGCTCCCTCATCATCCTCTGGGGTCACACCATTGCCAAGCACTTTTGATACGTTTAAGTGGCCTCCTCGCCCATTTGCCTCGATTTCTGCTGGGTTTGTATCAGACTGCGGCGGAAGAATGCGGACACTGTTTGTAACTCAGCTGCATGCAAGTGTGAGCGAGAAGAGGCTCAAATCGGTATTTGAGAAATATGGTCCCGTTAAAAGGACAAAAATTATTCCTTACCTGTGGAAGATGAATTGCGCATTTGTGGAGTTCGAGCGGGAGAGTGATAGTGAAGATGCATTGGTGGATATGCGTTTCAAAAGCTTCCTAGGCAAATGGCAGTGGAAAGTGCAATATGCTCACTCGGATGATGCTGGAAAGAGTGTTGAAGAAGAGTGTGTTGAAGAAGTTTATTGGCTACTTGTGCCTCGATCGTCATCCGACTCTAGAAAGGCTCTTGAAGATGATCATTCCTCATCCCACTCTGGGGTCACACCAACATCAACCACTTCTGCTCCCTCATCATCCTCTGGGGTCGCACCATCGCAAAGCTCTCTTCCTAGGTTTAAGTTGCCTCCTCTCCCACTTGCCTCGACCACAGCTGTGGATTTACCTCACTCAAGTCCACCCACAAGCCGCACAACTTTCCCAGCTCACATCAAAGTTCCCGAAGTTTTCTCAGACACCCTGACTTTTGGAACAGTTGGGGATATCCTTCATAGCATTAGCTGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0001817 GO:0001818 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007276 GO:0007281 GO:0007568 GO:0008104 GO:0008143 GO:0008150 GO:0008152 GO:0008219 GO:0008284 GO:0008340 GO:0008380 GO:0008543 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010259 GO:0010467 GO:0010468 GO:0010494 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010941 GO:0010942 GO:0012501 GO:0016070 GO:0016071 GO:0017091 GO:0017145 GO:0017148 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030532 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033036 GO:0033365 GO:0034248 GO:0034249 GO:0034613 GO:0034641 GO:0035770 GO:0036464 GO:0040012 GO:0042035 GO:0042036 GO:0042127 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046483 GO:0048024 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048609 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051301 GO:0051641 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0070727 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071704 GO:0071774 GO:0080090 GO:0090304 GO:0097159 GO:0097165 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1903311 GO:1903506 GO:1903608 GO:1904035 GO:1904037 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

367

Amino Acids

40.98

Weight (kDa)

6.23

Isoelectric Point (pI)

52.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 4 - 67 3.6e-11 RNA recognition motif
RRM_1 PF00076 170 - 234 8e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018194)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0083151
rosa_laevigata RLG00000037044
rosa_multiflora Rmu_sc0001287.1_g000002 Rmu_sc0002184.1_g000018
rosa_roxburghii Rroxscaffold_1G00000900
rosa_rugosa Rorug05G0440000
rosa_samantha Rh5AG532300 Rh5BG563600 Rh5CG585700 Rh5DG571700
rosa_wichuraiana Rw5G050070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 625
AccBSI CCGCTC 1 cut(s) 643
AciI CCGC 6 cut(s) 4, 489, 492, 502, 643, 1003
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 188
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 4 cut(s) 87, 585, 852, 853
AgsI TTSAA 7 cut(s) 187, 272, 329, 685, 755, 770, 827
AhlI ACTAGT 1 cut(s) 289
AjnI CCWGG 1 cut(s) 241
AleI CACNNNNGTG 1 cut(s) 968
AluBI AGCT 7 cut(s) 25, 523, 690, 918, 968, 1019, 1095
AluI AGCT 7 cut(s) 25, 523, 690, 918, 968, 1019, 1095
AlwI GGATC 1 cut(s) 233
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 3 cut(s) 25, 523, 1095
ApoI RAATTY 1 cut(s) 188
AspA2I CCTAGG 2 cut(s) 694, 926
AspLEI GCGC 1 cut(s) 626
AspS9I GGNCC 2 cut(s) 77, 575
AsuC2I CCSGG 1 cut(s) 197
AvaII GGWCC 2 cut(s) 77, 575
AvrII CCTAGG 2 cut(s) 694, 926
BbvI GCAGC 3 cut(s) 12, 510, 1082
BccI CCATC 1 cut(s) 916
BciT130I CCWGG 1 cut(s) 243
BclI TGATCA 1 cut(s) 832
BcnI CCSGG 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 289
BfaI CTAG 4 cut(s) 290, 695, 813, 927
BisI GCNGC 5 cut(s) 26, 490, 524, 1003, 1096
BlnI CCTAGG 2 cut(s) 694, 926
BlsI GCNGC 5 cut(s) 27, 491, 525, 1004, 1097
Bme1390I CCNGG 2 cut(s) 197, 243
Bme18I GGWCC 2 cut(s) 77, 575
BmgT120I GGNCC 2 cut(s) 77, 575
BmiI GGNNCC 2 cut(s) 79, 577
BmrFI CCNGG 2 cut(s) 197, 243
BmsI GCATC 3 cut(s) 154, 652, 727
BpuEI CTTGAG 2 cut(s) 298, 970
BpuMI CCSGG 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 802
BsaJI CCNNGG 3 cut(s) 110, 694, 926
BsaXI ACNNNNNCTCC 4 cut(s) 367, 397, 865, 895
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 585, 852, 853
Bse3DI GCAATG 2 cut(s) 215, 410
Bse8I GATNNNNATC 1 cut(s) 802
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 3 cut(s) 110, 694, 926
BseGI GGATG 7 cut(s) 241, 305, 392, 739, 803, 842, 890
BseJI GATNNNNATC 1 cut(s) 802
BseLI CCNNNNNNNGG 4 cut(s) 87, 585, 852, 853
BseMI GCAATG 2 cut(s) 215, 410
BseMII CTCAG 3 cut(s) 35, 533, 1059
BseRI GAGGAG 2 cut(s) 435, 933
BseXI GCAGC 3 cut(s) 12, 510, 1082
BseYI CCCAGC 2 cut(s) 470, 1015
Bsh1285I CGRYCG 1 cut(s) 800
BshFI GGCC 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 800
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 2 cut(s) 63, 561
BslI CCNNNNNNNGG 4 cut(s) 87, 585, 852, 853
BsmFI GGGAC 2 cut(s) 63, 561
BsmI GAATGC 1 cut(s) 504
BsnI GGCC 1 cut(s) 442
Bsp143I GATC 4 cut(s) 238, 334, 797, 832
BspACI CCGC 6 cut(s) 4, 489, 492, 502, 643, 1003
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 3 cut(s) 34, 532, 1058
BspLI GGNNCC 2 cut(s) 79, 577
BspPI GGATC 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 643
BsrDI GCAATG 2 cut(s) 215, 410
BssECI CCNNGG 3 cut(s) 110, 694, 926
BssMI GATC 4 cut(s) 238, 334, 797, 832
BssT1I CCWWGG 2 cut(s) 694, 926
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 3 cut(s) 12, 510, 1069
Bst6I CTCTTC 5 cut(s) 41, 255, 539, 753, 927
BstAPI GCANNNNNTGC 2 cut(s) 292, 1095
BstC8I GCNNGC 2 cut(s) 30, 528
BstDEI CTNAG 3 cut(s) 21, 519, 1045
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 7 cut(s) 241, 305, 392, 739, 803, 842, 890
BstHHI GCGC 1 cut(s) 626
BstKTI GATC 4 cut(s) 241, 337, 800, 835
BstMBI GATC 4 cut(s) 238, 334, 797, 832
BstMCI CGRYCG 1 cut(s) 800
BstMWI GCNNNNNNNGC 4 cut(s) 292, 696, 790, 1095
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 2 cut(s) 32, 530
BstSCI CCNGG 2 cut(s) 195, 241
BstV1I GCAGC 3 cut(s) 12, 510, 1082
BstXI CCANNNNNNTGG 1 cut(s) 970
BsuRI GGCC 1 cut(s) 442
BtgI CCRYGG 1 cut(s) 110
BtgZI GCGATG 1 cut(s) 894
BtsCI GGATG 7 cut(s) 241, 305, 392, 739, 803, 842, 890
BtsI GCAGTG 1 cut(s) 713
BtsIMutI CAGTG 3 cut(s) 8, 506, 713
Cac8I GCNNGC 2 cut(s) 30, 528
CfoI GCGC 1 cut(s) 626
Cfr13I GGNCC 2 cut(s) 77, 575
Csp6I GTAC 1 cut(s) 349
CviAII CATG 2 cut(s) 29, 527
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 3 cut(s) 21, 519, 1045
DpnI GATC 4 cut(s) 240, 336, 799, 834
DpnII GATC 4 cut(s) 238, 334, 797, 832
Eam1104I CTCTTC 5 cut(s) 41, 255, 539, 753, 927
EarI CTCTTC 5 cut(s) 41, 255, 539, 753, 927
EciI GGCGGA 1 cut(s) 507
Eco130I CCWWGG 2 cut(s) 694, 926
Eco32I GATATC 1 cut(s) 1078
Eco47I GGWCC 2 cut(s) 77, 575
EcoRII CCWGG 1 cut(s) 241
EcoRV GATATC 1 cut(s) 1078
EcoT14I CCWWGG 2 cut(s) 694, 926
EcoT22I ATGCAT 1 cut(s) 667
ErhI CCWWGG 2 cut(s) 694, 926
FaeI CATG 2 cut(s) 32, 530
FaiI YATR 9 cut(s) 30, 75, 179, 225, 528, 573, 677, 723, 1086
FaqI GGGAC 2 cut(s) 63, 561
FatI CATG 2 cut(s) 28, 526
FauI CCCGC 1 cut(s) 636
FbaI TGATCA 1 cut(s) 832
Fnu4HI GCNGC 5 cut(s) 26, 490, 524, 1003, 1096
FokI GGATG 7 cut(s) 248, 292, 379, 746, 790, 829, 877
Fsp4HI GCNGC 5 cut(s) 26, 490, 524, 1003, 1096
FspBI CTAG 4 cut(s) 290, 695, 813, 927
FspI TGCGCA 1 cut(s) 625
GlaI GCGC 1 cut(s) 625
GluI GCNGC 5 cut(s) 26, 490, 524, 1003, 1096
GsaI CCCAGC 2 cut(s) 474, 1019
HaeIII GGCC 1 cut(s) 442
HapII CCGG 1 cut(s) 197
HhaI GCGC 1 cut(s) 626
Hin1II CATG 2 cut(s) 32, 530
Hin6I GCGC 1 cut(s) 624
HinP1I GCGC 1 cut(s) 624
HindIII AAGCTT 1 cut(s) 688
HinfI GANTC 2 cut(s) 311, 809
HpaII CCGG 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 992
Hpy188I TCNGA 6 cut(s) 235, 310, 484, 733, 808, 1048
Hpy188III TCNNGA 6 cut(s) 161, 315, 326, 813, 824, 1034
Hpy8I GTNNAC 1 cut(s) 992
HpyAV CCTTC 1 cut(s) 1091
HpyCH4III ACNGT 3 cut(s) 12, 510, 1069
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 7 cut(s) 28, 32, 526, 530, 665, 718, 1098
HpyF10VI GCNNNNNNNGC 4 cut(s) 292, 696, 790, 1095
HpyF3I CTNAG 3 cut(s) 21, 519, 1045
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 2 cut(s) 32, 530
HspAI GCGC 1 cut(s) 624
Ksp22I TGATCA 1 cut(s) 832
Kzo9I GATC 4 cut(s) 238, 334, 797, 832
LmnI GCTCC 2 cut(s) 388, 886
Lsp1109I GCAGC 3 cut(s) 12, 510, 1082
LweI GCATC 3 cut(s) 154, 652, 727
MaeI CTAG 4 cut(s) 290, 695, 813, 927
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 5 cut(s) 16, 358, 403, 514, 856
MalI GATC 4 cut(s) 240, 336, 799, 834
MbiI CCGCTC 1 cut(s) 643
MboI GATC 4 cut(s) 238, 334, 797, 832
MluCI AATT 6 cut(s) 96, 121, 188, 594, 619, 1099
MlyI GAGTC 2 cut(s) 305, 803
MmeI TCCRAC 2 cut(s) 333, 831
Mph1103I ATGCAT 1 cut(s) 667
MseI TTAA 5 cut(s) 84, 435, 582, 933, 1102
MslI CAYNNNNRTG 5 cut(s) 33, 234, 531, 732, 968
MspA1I CMGCKG 3 cut(s) 25, 523, 968
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 2 cut(s) 197, 243
Mva1269I GAATGC 1 cut(s) 504
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 4 cut(s) 292, 696, 790, 1095
NciI CCSGG 1 cut(s) 197
NdeII GATC 4 cut(s) 238, 334, 797, 832
NlaIII CATG 2 cut(s) 32, 530
NlaIV GGNNCC 2 cut(s) 79, 577
NmuCI GTSAC 3 cut(s) 358, 403, 856
NsbI TGCGCA 1 cut(s) 625
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 2 cut(s) 32, 530
OliI CACNNNNGTG 1 cut(s) 968
PaeI GCATGC 2 cut(s) 32, 530
PctI GAATGC 1 cut(s) 504
PfoI TCCNGGA 2 cut(s) 195, 241
PkrI GCNGC 5 cut(s) 27, 491, 525, 1004, 1097
Ple19I CGATCG 1 cut(s) 800
PleI GAGTC 2 cut(s) 305, 803
PpsI GAGTC 2 cut(s) 305, 803
Psp6I CCWGG 1 cut(s) 241
PspFI CCCAGC 2 cut(s) 470, 1015
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 79, 577
PspPI GGNCC 2 cut(s) 77, 575
PvuI CGATCG 1 cut(s) 800
PvuII CAGCTG 3 cut(s) 25, 523, 968
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 5 cut(s) 33, 234, 531, 732, 968
SaqAI TTAA 5 cut(s) 84, 435, 582, 933, 1102
SatI GCNGC 5 cut(s) 26, 490, 524, 1003, 1096
Sau3AI GATC 4 cut(s) 238, 334, 797, 832
Sau96I GGNCC 2 cut(s) 77, 575
SchI GAGTC 2 cut(s) 305, 803
ScrFI CCNGG 2 cut(s) 197, 243
SfaNI GCATC 3 cut(s) 154, 652, 727
SinI GGWCC 2 cut(s) 77, 575
SmiMI CAYNNNNRTG 5 cut(s) 33, 234, 531, 732, 968
SmlI CTYRAG 2 cut(s) 313, 985
SmoI CTYRAG 2 cut(s) 313, 985
SpeI ACTAGT 1 cut(s) 289
SphI GCATGC 2 cut(s) 32, 530
Sse9I AATT 6 cut(s) 96, 121, 188, 594, 619, 1099
SsiI CCGC 6 cut(s) 4, 489, 492, 502, 643, 1003
SspMI CTAG 4 cut(s) 290, 695, 813, 927
StyD4I CCNGG 2 cut(s) 195, 241
StyI CCWWGG 2 cut(s) 694, 926
TaaI ACNGT 3 cut(s) 12, 510, 1069
TaiI ACGT 1 cut(s) 434
TaqI TCGA 4 cut(s) 461, 639, 796, 959
TasI AATT 6 cut(s) 96, 121, 188, 594, 619, 1099
TauI GCSGC 2 cut(s) 492, 1005
Tru1I TTAA 5 cut(s) 84, 435, 582, 933, 1102
Tru9I TTAA 5 cut(s) 84, 435, 582, 933, 1102
TscAI CASTG 3 cut(s) 15, 513, 713
TseFI GTSAC 3 cut(s) 358, 403, 856
TseI GCWGC 3 cut(s) 25, 523, 1095
Tsp45I GTSAC 3 cut(s) 358, 403, 856
TspDTI ATGAA 2 cut(s) 632, 1073
TspRI CASTG 3 cut(s) 15, 513, 713
VpaK11BI GGWCC 2 cut(s) 77, 575
XapI RAATTY 1 cut(s) 188
XbaI TCTAGA 1 cut(s) 812
XceI RCATGY 2 cut(s) 32, 530
XmaJI CCTAGG 2 cut(s) 694, 926
XspI CTAG 4 cut(s) 290, 695, 813, 927
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.