Rh5AG532300

nucleic acid binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018194
Physical Location & Seq
Forward (+)
91421423 .. 91426989
5567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG532300.1

Sequence Viewer

Length: 1149 bp
ATGCGGACACTGTTTGTAACTCAGCTGCATGCAAGTGTGAGCGAGAAGAGGCTCAAATCGGTATTTGAGAAATATGGTCCCGTTAAAAGGACGAAAATTATTCCTTACCCGTGGAAGAAGAATTGTGCTTTTGTGGAGTTTGAGCGGGAGAGTGATAGTCAAGATGCGTTGGTGGATATGCGTTTCAAATTCTTCCCGGACAAATGGCAATGGAAAGTGTGCTATGCTCACTCGGATGATCCTGGAAAGAGTGTTGTAGAAGAGAATGTTGAAGAAGTTGATTGGCAACTAGTGCCTCAATCGTCATGCGACTCAAGAAAGGCTCTTGAAGAAGATCATTCCTCATCGTACTCTGGGGTCACACCAACATCAACCACTTCTGCTCCCTCATCATCCTCTGGGGTCACACCATCGCCAAGCACTTTTGATACGTTTAAGTGGCCTCCTCACCCATTTGCCTCGACCACTGCTGGGTTTGTATCAGACCGCGGCAGAAGAATGCGGACACTGTTTGTAACTCAGCTGCATGCAAGTGTGAGCGAGAAGAGGCTCAAATCGGTATTTGAGAAATATGGTCCCGTTAAAAGGACGAAAATTATTCCTTACCTGTGGAAGATGAATTGTGCATTTGTGGAGTTCGAGCGGGAGAGTGATAGTGAAGATGCATTGGTGGATATGCGTTTCAAAAGCTTCCTAGGCAAATGGCAGTGGAAAGTGCAATATGCTCACTCGGATGATGCTGGAAAGAGTGTTGAAGAAGAGTGTGTTGAAGAAGTTTATTGGCTACTTGTGCCTCGATCGTCATCCGACTCTAGAAAGGCTCCTGAAGATGATCATTCCTCATCCCACTCTGGGGTCACACCAACATCAACCACTTCTGCTCCCTCATCATCCTCTGGGGTCACACCAACATCAACCACTTCTGCTCCCTCATCATCCTCTGGGGTCGCACCATCGCAAAGCTCTCTTCCTAGGTTTAAGTTGCCTCCTCTCCCGCTTGCCTCGACCACAACTGTGGATTTACCTCACTCAAGTCCACCCACAAGCCGCACAACTTTCCCAGCTCACATCAAAGTTCCCGAAGTTTTCTCAGACACCCTGACTTTTGGAACAGTTGGGGATATCCTTCATAGCATTAGCTGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0001817 GO:0001818 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007276 GO:0007281 GO:0007568 GO:0008104 GO:0008143 GO:0008150 GO:0008152 GO:0008219 GO:0008284 GO:0008340 GO:0008380 GO:0008543 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010259 GO:0010467 GO:0010468 GO:0010494 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010941 GO:0010942 GO:0012501 GO:0016070 GO:0016071 GO:0017091 GO:0017145 GO:0017148 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030532 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033036 GO:0033365 GO:0034248 GO:0034249 GO:0034613 GO:0034641 GO:0035770 GO:0036464 GO:0040012 GO:0042035 GO:0042036 GO:0042127 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046483 GO:0048024 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048609 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051301 GO:0051641 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0070727 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071704 GO:0071774 GO:0080090 GO:0090304 GO:0097159 GO:0097165 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1903311 GO:1903506 GO:1903608 GO:1904035 GO:1904037 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

382

Amino Acids

42.49

Weight (kDa)

6.61

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 4 - 67 5.2e-11 RNA recognition motif
RRM_1 PF00076 170 - 234 8.5e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018194)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0083151
rosa_laevigata RLG00000037044
rosa_multiflora Rmu_sc0001287.1_g000002 Rmu_sc0002184.1_g000018
rosa_roxburghii Rroxscaffold_1G00000900
rosa_rugosa Rorug05G0440000
rosa_samantha Rh5AG532300 Rh5BG563600 Rh5CG585700 Rh5DG571700
rosa_wichuraiana Rw5G050070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 145, 643
AccII CGCG 1 cut(s) 489
AciI CCGC 8 cut(s) 4, 145, 487, 489, 502, 643, 995, 1048
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 846
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 5 cut(s) 87, 471, 585, 852, 853
AgsI TTSAA 6 cut(s) 187, 272, 329, 685, 755, 770
AhlI ACTAGT 1 cut(s) 289
AjnI CCWGG 1 cut(s) 241
AleI CACNNNNGTG 1 cut(s) 1013
AluBI AGCT 6 cut(s) 25, 523, 690, 963, 1064, 1140
AluI AGCT 6 cut(s) 25, 523, 690, 963, 1064, 1140
AlwI GGATC 1 cut(s) 233
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 3 cut(s) 25, 523, 1140
ApoI RAATTY 1 cut(s) 188
AspA2I CCTAGG 2 cut(s) 694, 971
AspS9I GGNCC 2 cut(s) 77, 575
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 440
AvaII GGWCC 2 cut(s) 77, 575
AvrII CCTAGG 2 cut(s) 694, 971
BbvI GCAGC 3 cut(s) 12, 510, 1127
BccI CCATC 2 cut(s) 418, 961
BciT130I CCWGG 1 cut(s) 243
BclI TGATCA 1 cut(s) 832
BcnI CCSGG 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 289
BfaI CTAG 4 cut(s) 290, 695, 813, 972
BisI GCNGC 5 cut(s) 26, 490, 524, 1048, 1141
BlnI CCTAGG 2 cut(s) 694, 971
BlsI GCNGC 5 cut(s) 27, 491, 525, 1049, 1142
Bme1390I CCNGG 2 cut(s) 197, 243
Bme18I GGWCC 2 cut(s) 77, 575
BmgT120I GGNCC 2 cut(s) 77, 575
BmiI GGNNCC 3 cut(s) 79, 577, 822
BmrFI CCNGG 2 cut(s) 197, 243
BmsI GCATC 3 cut(s) 154, 652, 727
BpuEI CTTGAG 2 cut(s) 298, 1015
BpuMI CCSGG 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 802
BsaJI CCNNGG 4 cut(s) 110, 487, 694, 971
BsaXI ACNNNNNCTCC 6 cut(s) 367, 397, 865, 895, 910, 940
Bsc4I CCNNNNNNNGG 5 cut(s) 87, 471, 585, 852, 853
Bse3DI GCAATG 1 cut(s) 215
Bse8I GATNNNNATC 1 cut(s) 802
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 4 cut(s) 110, 487, 694, 971
BseGI GGATG 7 cut(s) 241, 392, 739, 803, 842, 890, 935
BseJI GATNNNNATC 1 cut(s) 802
BseLI CCNNNNNNNGG 5 cut(s) 87, 471, 585, 852, 853
BseMI GCAATG 1 cut(s) 215
BseMII CTCAG 3 cut(s) 35, 533, 1104
BseRI GAGGAG 2 cut(s) 435, 978
BseXI GCAGC 3 cut(s) 12, 510, 1127
BseYI CCCAGC 2 cut(s) 470, 1060
Bsh1236I CGCG 1 cut(s) 489
Bsh1285I CGRYCG 1 cut(s) 800
BshFI GGCC 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 800
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 2 cut(s) 63, 561
BslI CCNNNNNNNGG 5 cut(s) 87, 471, 585, 852, 853
BsmFI GGGAC 2 cut(s) 63, 561
BsmI GAATGC 1 cut(s) 504
BsnI GGCC 1 cut(s) 442
Bsp143I GATC 4 cut(s) 238, 334, 797, 832
BspACI CCGC 8 cut(s) 4, 145, 487, 489, 502, 643, 995, 1048
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 3 cut(s) 34, 532, 1103
BspFNI CGCG 1 cut(s) 489
BspLI GGNNCC 3 cut(s) 79, 577, 822
BspPI GGATC 1 cut(s) 233
BsrBI CCGCTC 2 cut(s) 145, 643
BsrDI GCAATG 1 cut(s) 215
BssECI CCNNGG 4 cut(s) 110, 487, 694, 971
BssMI GATC 4 cut(s) 238, 334, 797, 832
BssT1I CCWWGG 2 cut(s) 694, 971
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 4 cut(s) 12, 510, 1015, 1114
Bst6I CTCTTC 5 cut(s) 41, 255, 539, 753, 972
BstAPI GCANNNNNTGC 2 cut(s) 292, 1140
BstC8I GCNNGC 3 cut(s) 30, 528, 999
BstDEI CTNAG 3 cut(s) 21, 519, 1090
BstDSI CCRYGG 2 cut(s) 110, 487
BstF5I GGATG 7 cut(s) 241, 392, 739, 803, 842, 890, 935
BstFNI CGCG 1 cut(s) 489
BstKTI GATC 4 cut(s) 241, 337, 800, 835
BstMBI GATC 4 cut(s) 238, 334, 797, 832
BstMCI CGRYCG 1 cut(s) 800
BstMWI GCNNNNNNNGC 4 cut(s) 292, 696, 790, 1140
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 2 cut(s) 32, 530
BstSCI CCNGG 2 cut(s) 195, 241
BstUI CGCG 1 cut(s) 489
BstV1I GCAGC 3 cut(s) 12, 510, 1127
BstXI CCANNNNNNTGG 1 cut(s) 1015
BsuRI GGCC 1 cut(s) 442
BtgI CCRYGG 2 cut(s) 110, 487
BtgZI GCGATG 2 cut(s) 396, 939
BtsCI GGATG 7 cut(s) 241, 392, 739, 803, 842, 890, 935
BtsI GCAGTG 2 cut(s) 465, 713
BtsIMutI CAGTG 4 cut(s) 8, 465, 506, 713
Cac8I GCNNGC 3 cut(s) 30, 528, 999
Cfr13I GGNCC 2 cut(s) 77, 575
Cfr42I CCGCGG 1 cut(s) 490
Csp6I GTAC 1 cut(s) 349
CviAII CATG 3 cut(s) 29, 306, 527
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 3 cut(s) 21, 519, 1090
DpnI GATC 4 cut(s) 240, 336, 799, 834
DpnII GATC 4 cut(s) 238, 334, 797, 832
Eam1104I CTCTTC 5 cut(s) 41, 255, 539, 753, 972
EarI CTCTTC 5 cut(s) 41, 255, 539, 753, 972
Eco130I CCWWGG 2 cut(s) 694, 971
Eco32I GATATC 1 cut(s) 1123
Eco47I GGWCC 2 cut(s) 77, 575
Eco57I CTGAAG 1 cut(s) 846
EcoRII CCWGG 1 cut(s) 241
EcoRV GATATC 1 cut(s) 1123
EcoT14I CCWWGG 2 cut(s) 694, 971
EcoT22I ATGCAT 1 cut(s) 667
ErhI CCWWGG 2 cut(s) 694, 971
FaeI CATG 3 cut(s) 32, 309, 530
FaqI GGGAC 2 cut(s) 63, 561
FatI CATG 3 cut(s) 28, 305, 526
FauI CCCGC 3 cut(s) 138, 636, 1002
FbaI TGATCA 1 cut(s) 832
Fnu4HI GCNGC 5 cut(s) 26, 490, 524, 1048, 1141
FokI GGATG 7 cut(s) 248, 379, 746, 790, 829, 877, 922
Fsp4HI GCNGC 5 cut(s) 26, 490, 524, 1048, 1141
FspBI CTAG 4 cut(s) 290, 695, 813, 972
GluI GCNGC 5 cut(s) 26, 490, 524, 1048, 1141
GsaI CCCAGC 2 cut(s) 474, 1064
HaeIII GGCC 1 cut(s) 442
HapII CCGG 1 cut(s) 197
Hin1II CATG 3 cut(s) 32, 309, 530
HindIII AAGCTT 1 cut(s) 688
HinfI GANTC 2 cut(s) 311, 809
HpaII CCGG 1 cut(s) 197
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 1 cut(s) 1037
Hpy188I TCNGA 5 cut(s) 235, 484, 733, 808, 1093
Hpy188III TCNNGA 6 cut(s) 161, 315, 326, 813, 824, 1079
Hpy8I GTNNAC 1 cut(s) 1037
HpyAV CCTTC 1 cut(s) 1136
HpyCH4III ACNGT 4 cut(s) 12, 510, 1015, 1114
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 8 cut(s) 28, 32, 526, 530, 626, 665, 718, 1143
HpyF10VI GCNNNNNNNGC 4 cut(s) 292, 696, 790, 1140
HpyF3I CTNAG 3 cut(s) 21, 519, 1090
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 3 cut(s) 32, 309, 530
Ksp22I TGATCA 1 cut(s) 832
KspI CCGCGG 1 cut(s) 490
Kzo9I GATC 4 cut(s) 238, 334, 797, 832
LmnI GCTCC 4 cut(s) 388, 826, 886, 931
Lsp1109I GCAGC 3 cut(s) 12, 510, 1127
LweI GCATC 3 cut(s) 154, 652, 727
MaeI CTAG 4 cut(s) 290, 695, 813, 972
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 6 cut(s) 16, 358, 403, 514, 856, 901
MalI GATC 4 cut(s) 240, 336, 799, 834
MbiI CCGCTC 2 cut(s) 145, 643
MboI GATC 4 cut(s) 238, 334, 797, 832
MluCI AATT 6 cut(s) 96, 121, 188, 594, 619, 1144
MlyI GAGTC 2 cut(s) 305, 803
MmeI TCCRAC 1 cut(s) 831
Mph1103I ATGCAT 1 cut(s) 667
MseI TTAA 5 cut(s) 84, 435, 582, 978, 1147
MslI CAYNNNNRTG 5 cut(s) 33, 234, 531, 732, 1013
MspA1I CMGCKG 3 cut(s) 25, 489, 523
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 2 cut(s) 197, 243
Mva1269I GAATGC 1 cut(s) 504
MvaI CCWGG 1 cut(s) 243
MvnI CGCG 1 cut(s) 489
MwoI GCNNNNNNNGC 4 cut(s) 292, 696, 790, 1140
NciI CCSGG 1 cut(s) 197
NdeII GATC 4 cut(s) 238, 334, 797, 832
NlaIII CATG 3 cut(s) 32, 309, 530
NlaIV GGNNCC 3 cut(s) 79, 577, 822
NmuCI GTSAC 4 cut(s) 358, 403, 856, 901
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 2 cut(s) 32, 530
OliI CACNNNNGTG 1 cut(s) 1013
PaeI GCATGC 2 cut(s) 32, 530
PctI GAATGC 1 cut(s) 504
PfoI TCCNGGA 2 cut(s) 195, 241
PkrI GCNGC 5 cut(s) 27, 491, 525, 1049, 1142
Ple19I CGATCG 1 cut(s) 800
PleI GAGTC 2 cut(s) 305, 803
PpsI GAGTC 2 cut(s) 305, 803
Psp6I CCWGG 1 cut(s) 241
PspFI CCCAGC 2 cut(s) 470, 1060
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 3 cut(s) 79, 577, 822
PspPI GGNCC 2 cut(s) 77, 575
PvuI CGATCG 1 cut(s) 800
PvuII CAGCTG 2 cut(s) 25, 523
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 5 cut(s) 33, 234, 531, 732, 1013
SacII CCGCGG 1 cut(s) 490
SaqAI TTAA 5 cut(s) 84, 435, 582, 978, 1147
SatI GCNGC 5 cut(s) 26, 490, 524, 1048, 1141
Sau3AI GATC 4 cut(s) 238, 334, 797, 832
Sau96I GGNCC 2 cut(s) 77, 575
SchI GAGTC 2 cut(s) 305, 803
ScrFI CCNGG 2 cut(s) 197, 243
SfaNI GCATC 3 cut(s) 154, 652, 727
Sfr303I CCGCGG 1 cut(s) 490
SgrBI CCGCGG 1 cut(s) 490
SinI GGWCC 2 cut(s) 77, 575
SmiMI CAYNNNNRTG 5 cut(s) 33, 234, 531, 732, 1013
SmlI CTYRAG 2 cut(s) 313, 1030
SmoI CTYRAG 2 cut(s) 313, 1030
SpeI ACTAGT 1 cut(s) 289
SphI GCATGC 2 cut(s) 32, 530
Sse9I AATT 6 cut(s) 96, 121, 188, 594, 619, 1144
SsiI CCGC 8 cut(s) 4, 145, 487, 489, 502, 643, 995, 1048
SspMI CTAG 4 cut(s) 290, 695, 813, 972
StyD4I CCNGG 2 cut(s) 195, 241
StyI CCWWGG 2 cut(s) 694, 971
TaaI ACNGT 4 cut(s) 12, 510, 1015, 1114
TaiI ACGT 1 cut(s) 434
TaqI TCGA 4 cut(s) 461, 639, 796, 1004
TasI AATT 6 cut(s) 96, 121, 188, 594, 619, 1144
TauI GCSGC 2 cut(s) 492, 1050
Tru1I TTAA 5 cut(s) 84, 435, 582, 978, 1147
Tru9I TTAA 5 cut(s) 84, 435, 582, 978, 1147
TscAI CASTG 4 cut(s) 15, 472, 513, 713
TseFI GTSAC 4 cut(s) 358, 403, 856, 901
TseI GCWGC 3 cut(s) 25, 523, 1140
Tsp45I GTSAC 4 cut(s) 358, 403, 856, 901
TspDTI ATGAA 2 cut(s) 632, 1118
TspRI CASTG 4 cut(s) 15, 472, 513, 713
VpaK11BI GGWCC 2 cut(s) 77, 575
XapI RAATTY 1 cut(s) 188
XbaI TCTAGA 1 cut(s) 812
XceI RCATGY 2 cut(s) 32, 530
XmaJI CCTAGG 2 cut(s) 694, 971
XspI CTAG 4 cut(s) 290, 695, 813, 972
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.