RLG00000037044

nucleic acid binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018194
Physical Location & Seq
Reverse (-)
87807304 .. 87813195
5892 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037044

Sequence Viewer

Length: 1086 bp
ATGGTCATGGGTCTGGGGCAAGAGACCGAACAAAACCCTTCCCTCTCGGAGAAAGACTTTGAGATATCAAAGACGGTTTATGTTTCCGGTGGCTGTGGCTGGACGCATTTAAACTCTTCTGATTCCAATCTTGCTGTGTTTGGAGAGACTCAAGGTTTTAGGCTCAAATCGGTATTTGAGAAATATGGTCCCGTTAAAAGGACGAAAATTATTCCTTACCCGTGGAAGAAGAATTGTGCTTTTGTGGAGTTTGAGCGGGAGAGTGATAGTCAAGATGCGTTGGTGGATATGCGTTTCAAATTCTTCCCGGACAAATGGCAATGGAAAGTGTGCCATGCTCACTCGGATGATCCTGGAAAGAGTGTTGTAGAAGAGAATGTTGAAGAAGTTGATTGGCAACTAGTGCCTCAATCGTCATCCGACTCAAGAAAGGCTCTTGAAGAAGATCATTCCTCATCGTACTCTGGGGTCACAACTCTTGCTCCCTCATCATCTTTTGGGGTCACACCATCGCCAAGCACTTTTGATACGTTTAAGTTGCCTCGTCGCCCATTTGCCTCGACCACTGCTGGGTTTGTATCAGACCGCGGCGGAAGAATGCGGACACTGTTTGTAACTCAGCTGCATGCAAGTGTGAGTGAGAAGAGGCTCAAATCGGTATTTGAGAAATATGGTCCCGTTAAAAGGACGAAAATTATTCCAGACCCGTGGAAGATGAATTGTGCATTTGTGGAGTTCGAGCGGGAGAGTGATAGTGAAGATGCACTGGTGGATATGCGTTTCAAAAGCTTCCTAGGCAAATGGCAGTGGAAAGTGCAATATGCTCACTCGGATGATGCTGGAAAGAGTGTTGAAGAAGAGTGTGTTGAAGAAGTTTATTGGCTACTTGTGCCTCGATCGTCATCCGACTCAAGAAAGGCTCTTGAAGATGATCATTCCTCATCCCACTCTGTGGATTTACCTCACTCAAGTCCACCCACAAGCCGCACAACTTTCCCAGCTCACATCAAAGTTCCCGAAGTTTTCTCAGACACCCTGACTTTTGGAACAGTTGGGGGTATCCTTCATAGCATTAGCTGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0001817 GO:0001818 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007276 GO:0007281 GO:0007568 GO:0008104 GO:0008143 GO:0008150 GO:0008152 GO:0008219 GO:0008284 GO:0008340 GO:0008380 GO:0008543 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010259 GO:0010467 GO:0010468 GO:0010494 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010941 GO:0010942 GO:0012501 GO:0016070 GO:0016071 GO:0017091 GO:0017145 GO:0017148 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030532 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033036 GO:0033365 GO:0034248 GO:0034249 GO:0034613 GO:0034641 GO:0035770 GO:0036464 GO:0040012 GO:0042035 GO:0042036 GO:0042127 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046483 GO:0048024 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048609 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051301 GO:0051641 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0070727 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071704 GO:0071774 GO:0080090 GO:0090304 GO:0097159 GO:0097165 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1903311 GO:1903506 GO:1903608 GO:1904035 GO:1904037 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

362

Amino Acids

40.67

Weight (kDa)

5.72

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 55 - 104 1e-06 RNA recognition motif
RRM_1 PF00076 203 - 267 5.7e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018194)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0083151
rosa_laevigata RLG00000037044
rosa_multiflora Rmu_sc0001287.1_g000002 Rmu_sc0002184.1_g000018
rosa_roxburghii Rroxscaffold_1G00000900
rosa_rugosa Rorug05G0440000
rosa_samantha Rh5AG532300 Rh5BG563600 Rh5CG585700 Rh5DG571700
rosa_wichuraiana Rw5G050070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 952
AccBSI CCGCTC 2 cut(s) 256, 742
AccII CGCG 1 cut(s) 588
AciI CCGC 7 cut(s) 256, 586, 588, 591, 601, 742, 985
AclWI GGATC 1 cut(s) 344
AcsI RAATTY 1 cut(s) 299
AdeI CACNNNGTG 1 cut(s) 952
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 4 cut(s) 198, 570, 684, 952
AgsI TTSAA 7 cut(s) 298, 383, 440, 784, 854, 869, 926
AhlI ACTAGT 1 cut(s) 400
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 4 cut(s) 622, 789, 1001, 1077
AluI AGCT 4 cut(s) 622, 789, 1001, 1077
Alw26I GTCTC 2 cut(s) 17, 140
AlwI GGATC 1 cut(s) 344
ApeKI GCWGC 2 cut(s) 622, 1077
ApoI RAATTY 1 cut(s) 299
AspA2I CCTAGG 1 cut(s) 793
AspS9I GGNCC 2 cut(s) 188, 674
AsuC2I CCSGG 1 cut(s) 308
AvaII GGWCC 2 cut(s) 188, 674
AvrII CCTAGG 1 cut(s) 793
BbvI GCAGC 2 cut(s) 609, 1064
BccI CCATC 1 cut(s) 517
BciT130I CCWGG 1 cut(s) 354
BciVI GTATCC 1 cut(s) 1070
BclI TGATCA 1 cut(s) 931
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 2 cut(s) 17, 140
BcuI ACTAGT 1 cut(s) 400
BfaI CTAG 2 cut(s) 401, 794
BfuI GTATCC 1 cut(s) 1070
BisI GCNGC 4 cut(s) 589, 623, 985, 1078
BlnI CCTAGG 1 cut(s) 793
BlsI GCNGC 4 cut(s) 590, 624, 986, 1079
Bme1390I CCNGG 2 cut(s) 308, 354
Bme18I GGWCC 2 cut(s) 188, 674
BmgT120I GGNCC 2 cut(s) 188, 674
BmiI GGNNCC 2 cut(s) 190, 676
BmrFI CCNGG 2 cut(s) 308, 354
BmsI GCATC 3 cut(s) 265, 751, 826
BpuEI CTTGAG 4 cut(s) 135, 409, 895, 952
BpuMI CCSGG 1 cut(s) 308
BsaBI GATNNNNATC 2 cut(s) 126, 901
BsaI GGTCTC 1 cut(s) 17
BsaJI CCNNGG 4 cut(s) 221, 586, 707, 793
BsaWI WCCGGW 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 466, 496
Bsc4I CCNNNNNNNGG 4 cut(s) 198, 570, 684, 952
Bse1I ACTGG 1 cut(s) 771
Bse3DI GCAATG 1 cut(s) 326
Bse8I GATNNNNATC 2 cut(s) 126, 901
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 4 cut(s) 221, 586, 707, 793
BseGI GGATG 5 cut(s) 352, 416, 838, 902, 941
BseJI GATNNNNATC 2 cut(s) 126, 901
BseLI CCNNNNNNNGG 4 cut(s) 198, 570, 684, 952
BseMI GCAATG 1 cut(s) 326
BseMII CTCAG 2 cut(s) 632, 1041
BseNI ACTGG 1 cut(s) 771
BseXI GCAGC 2 cut(s) 609, 1064
BseYI CCCAGC 2 cut(s) 569, 997
Bsh1236I CGCG 1 cut(s) 588
Bsh1285I CGRYCG 1 cut(s) 899
BsiEI CGRYCG 1 cut(s) 899
BsiSI CCGG 2 cut(s) 87, 308
BslFI GGGAC 2 cut(s) 174, 660
BslI CCNNNNNNNGG 4 cut(s) 198, 570, 684, 952
BsmAI GTCTC 2 cut(s) 17, 140
BsmFI GGGAC 2 cut(s) 174, 660
BsmI GAATGC 1 cut(s) 603
Bso31I GGTCTC 1 cut(s) 17
Bsp143I GATC 4 cut(s) 349, 445, 896, 931
BspACI CCGC 7 cut(s) 256, 586, 588, 591, 601, 742, 985
BspCNI CTCAG 2 cut(s) 631, 1040
BspFNI CGCG 1 cut(s) 588
BspLI GGNNCC 2 cut(s) 190, 676
BspPI GGATC 1 cut(s) 344
BspTNI GGTCTC 1 cut(s) 17
BsrBI CCGCTC 2 cut(s) 256, 742
BsrDI GCAATG 1 cut(s) 326
BsrI ACTGG 1 cut(s) 771
BssECI CCNNGG 4 cut(s) 221, 586, 707, 793
BssMI GATC 4 cut(s) 349, 445, 896, 931
BssT1I CCWWGG 1 cut(s) 793
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 3 cut(s) 76, 609, 1051
Bst6I CTCTTC 4 cut(s) 121, 366, 638, 852
BstAPI GCANNNNNTGC 2 cut(s) 403, 1077
BstC8I GCNNGC 1 cut(s) 627
BstDEI CTNAG 2 cut(s) 618, 1027
BstDSI CCRYGG 3 cut(s) 221, 586, 707
BstF5I GGATG 5 cut(s) 352, 416, 838, 902, 941
BstFNI CGCG 1 cut(s) 588
BstKTI GATC 4 cut(s) 352, 448, 899, 934
BstMAI GTCTC 2 cut(s) 17, 140
BstMBI GATC 4 cut(s) 349, 445, 896, 931
BstMCI CGRYCG 1 cut(s) 899
BstMWI GCNNNNNNNGC 4 cut(s) 403, 795, 889, 1077
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 629
BstSCI CCNGG 2 cut(s) 306, 352
BstUI CGCG 1 cut(s) 588
BstV1I GCAGC 2 cut(s) 609, 1064
BstXI CCANNNNNNTGG 1 cut(s) 708
BsuI GTATCC 1 cut(s) 1070
BtgI CCRYGG 3 cut(s) 221, 586, 707
BtgZI GCGATG 1 cut(s) 495
BtsCI GGATG 5 cut(s) 352, 416, 838, 902, 941
BtsI GCAGTG 2 cut(s) 564, 812
BtsIMutI CAGTG 4 cut(s) 564, 605, 764, 812
Cac8I GCNNGC 1 cut(s) 627
Cfr13I GGNCC 2 cut(s) 188, 674
Cfr42I CCGCGG 1 cut(s) 589
CseI GACGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 460
CviAII CATG 3 cut(s) 7, 335, 626
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 2 cut(s) 618, 1027
DpnI GATC 4 cut(s) 351, 447, 898, 933
DpnII GATC 4 cut(s) 349, 445, 896, 931
DraI TTTAAA 1 cut(s) 111
DraIII CACNNNGTG 1 cut(s) 952
Eam1104I CTCTTC 4 cut(s) 121, 366, 638, 852
EarI CTCTTC 4 cut(s) 121, 366, 638, 852
EciI GGCGGA 1 cut(s) 606
Eco130I CCWWGG 1 cut(s) 793
Eco31I GGTCTC 1 cut(s) 17
Eco32I GATATC 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 188, 674
EcoRII CCWGG 1 cut(s) 352
EcoRV GATATC 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 793
ErhI CCWWGG 1 cut(s) 793
FaeI CATG 3 cut(s) 10, 338, 629
FaqI GGGAC 2 cut(s) 174, 660
FatI CATG 3 cut(s) 6, 334, 625
FauI CCCGC 2 cut(s) 249, 735
FbaI TGATCA 1 cut(s) 931
Fnu4HI GCNGC 4 cut(s) 589, 623, 985, 1078
FokI GGATG 5 cut(s) 359, 403, 845, 889, 928
Fsp4HI GCNGC 4 cut(s) 589, 623, 985, 1078
FspBI CTAG 2 cut(s) 401, 794
GluI GCNGC 4 cut(s) 589, 623, 985, 1078
GsaI CCCAGC 2 cut(s) 573, 1001
HapII CCGG 2 cut(s) 87, 308
HgaI GACGC 1 cut(s) 112
Hin1II CATG 3 cut(s) 10, 338, 629
HindIII AAGCTT 1 cut(s) 787
HinfI GANTC 4 cut(s) 122, 148, 422, 908
HpaII CCGG 2 cut(s) 87, 308
Hpy166II GTNNAC 1 cut(s) 974
Hpy188I TCNGA 8 cut(s) 49, 121, 346, 421, 583, 832, 907, 1030
Hpy188III TCNNGA 7 cut(s) 272, 426, 437, 701, 912, 923, 1016
Hpy8I GTNNAC 1 cut(s) 974
Hpy99I CGWCG 1 cut(s) 549
HpyAV CCTTC 2 cut(s) 48, 1073
HpyCH4III ACNGT 3 cut(s) 76, 609, 1051
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 6 cut(s) 625, 629, 725, 764, 817, 1080
HpyF10VI GCNNNNNNNGC 4 cut(s) 403, 795, 889, 1077
HpyF3I CTNAG 2 cut(s) 618, 1027
HpySE526I ACGT 1 cut(s) 530
Hsp92II CATG 3 cut(s) 10, 338, 629
Ksp22I TGATCA 1 cut(s) 931
KspI CCGCGG 1 cut(s) 589
Kzo9I GATC 4 cut(s) 349, 445, 896, 931
LmnI GCTCC 1 cut(s) 487
Lsp1109I GCAGC 2 cut(s) 609, 1064
LweI GCATC 3 cut(s) 265, 751, 826
MaeI CTAG 2 cut(s) 401, 794
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 3 cut(s) 469, 502, 613
MalI GATC 4 cut(s) 351, 447, 898, 933
MbiI CCGCTC 2 cut(s) 256, 742
MboI GATC 4 cut(s) 349, 445, 896, 931
MluCI AATT 6 cut(s) 207, 232, 299, 693, 718, 1081
MlyI GAGTC 3 cut(s) 142, 416, 902
MmeI TCCRAC 2 cut(s) 444, 930
MseI TTAA 5 cut(s) 110, 195, 534, 681, 1084
MslI CAYNNNNRTG 3 cut(s) 345, 630, 831
MspA1I CMGCKG 2 cut(s) 588, 622
MspI CCGG 2 cut(s) 87, 308
MspR9I CCNGG 2 cut(s) 308, 354
Mva1269I GAATGC 1 cut(s) 603
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 588
MwoI GCNNNNNNNGC 4 cut(s) 403, 795, 889, 1077
NciI CCSGG 1 cut(s) 308
NdeII GATC 4 cut(s) 349, 445, 896, 931
NlaIII CATG 3 cut(s) 10, 338, 629
NlaIV GGNNCC 2 cut(s) 190, 676
NmuCI GTSAC 2 cut(s) 469, 502
NspI RCATGY 1 cut(s) 629
PaeI GCATGC 1 cut(s) 629
PctI GAATGC 1 cut(s) 603
PfeI GAWTC 1 cut(s) 122
PflMI CCANNNNNTGG 1 cut(s) 952
PfoI TCCNGGA 2 cut(s) 306, 352
PkrI GCNGC 4 cut(s) 590, 624, 986, 1079
Ple19I CGATCG 1 cut(s) 899
PleI GAGTC 3 cut(s) 142, 416, 902
PpsI GAGTC 3 cut(s) 142, 416, 902
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 2 cut(s) 569, 997
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 190, 676
PspPI GGNCC 2 cut(s) 188, 674
PvuI CGATCG 1 cut(s) 899
PvuII CAGCTG 1 cut(s) 622
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
RseI CAYNNNNRTG 3 cut(s) 345, 630, 831
SacII CCGCGG 1 cut(s) 589
SaqAI TTAA 5 cut(s) 110, 195, 534, 681, 1084
SatI GCNGC 4 cut(s) 589, 623, 985, 1078
Sau3AI GATC 4 cut(s) 349, 445, 896, 931
Sau96I GGNCC 2 cut(s) 188, 674
SchI GAGTC 3 cut(s) 142, 416, 902
ScrFI CCNGG 2 cut(s) 308, 354
SetI ASST 7 cut(s) 157, 533, 624, 791, 964, 1003, 1079
SfaNI GCATC 3 cut(s) 265, 751, 826
Sfr303I CCGCGG 1 cut(s) 589
SgrBI CCGCGG 1 cut(s) 589
SinI GGWCC 2 cut(s) 188, 674
SmiMI CAYNNNNRTG 3 cut(s) 345, 630, 831
SmlI CTYRAG 4 cut(s) 150, 424, 910, 967
SmoI CTYRAG 4 cut(s) 150, 424, 910, 967
SpeI ACTAGT 1 cut(s) 400
SphI GCATGC 1 cut(s) 629
Sse9I AATT 6 cut(s) 207, 232, 299, 693, 718, 1081
SsiI CCGC 7 cut(s) 256, 586, 588, 591, 601, 742, 985
SspMI CTAG 2 cut(s) 401, 794
StyD4I CCNGG 2 cut(s) 306, 352
StyI CCWWGG 1 cut(s) 793
TaaI ACNGT 3 cut(s) 76, 609, 1051
TaiI ACGT 1 cut(s) 533
TaqI TCGA 3 cut(s) 560, 738, 895
TaqII GACCGA 1 cut(s) 41
TasI AATT 6 cut(s) 207, 232, 299, 693, 718, 1081
TauI GCSGC 2 cut(s) 591, 987
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 5 cut(s) 110, 195, 534, 681, 1084
Tru9I TTAA 5 cut(s) 110, 195, 534, 681, 1084
TscAI CASTG 4 cut(s) 571, 612, 771, 812
TseFI GTSAC 2 cut(s) 469, 502
TseI GCWGC 2 cut(s) 622, 1077
Tsp45I GTSAC 2 cut(s) 469, 502
TspDTI ATGAA 2 cut(s) 731, 1055
TspRI CASTG 4 cut(s) 571, 612, 771, 812
Van91I CCANNNNNTGG 1 cut(s) 952
VpaK11BI GGWCC 2 cut(s) 188, 674
XapI RAATTY 1 cut(s) 299
XceI RCATGY 1 cut(s) 629
XmaJI CCTAGG 1 cut(s) 793
XspI CTAG 2 cut(s) 401, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.