Rmu_sc0002184.1_g000018

nucleic acid binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002184.1
OG0018194
Physical Location & Seq
Forward (+)
69737 .. 73121
3385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002184.1_g000018.1.cds

Sequence Viewer

Length: 1155 bp
atgcggacactgtttgtaactcagctgcatgcaagtgtgagcgagaacaggctcaaatcggtatttgagaaatatggtcccgttaaaaggacgaaaattattccttacccgtggaagaagaattgtgcttttgtggagtttgagcgggagagtgatactcaagatgcgttggtggatatgcgtttcaaattcttcccagacaaatggcaatggaaagtgtgctatgctcactcggatgatcctggaggctcaaatcggacgaaaattattccttacccgtggaagaagaattgtgcttttgtggagtttgagcgggagagtgatactcaagatgcgttggtggatatgcgtttcaaattcttcccagacaaatggcaatggaaagtgtgctatgctcactcggatgatcctggaaagagtgttgtagaagagaatgttgaagaagttgattggcaactagtgcctcaatcgtcatctgactcaagaaaggctcttgaagaagatcattcctcatcgtattctggggtcacaccatcgccaagcacttttgatacgtttaagttgcctcctcgcccatttgcctcgaccactgctggggtcacaccatcgccaagcacttttgatacgtttaagttgcctcgccgatttgcctcgaccactgctggggtcacaccatcgccaagcacttttgatacgtttaagttgcctcgccgatttgcctcgaccactgctgggtttgtatcagaccgcggtggaagaatgcggacactgtttgtaactcagctgcatgcacgtgtgagcgacaagaggctcaaatcggtatttgagaaatatggtcccgttaaaaggacgaaaattattccttacccatggaagatgaatagtgcatttgtggagttcgagcgggagagtgatagtgaagatgcatgggtggatatgcgtttcaaaagcttcctaggcaaatggcagtggaaagtgcaatatgctcactcggatgatgctggaaagagtgttgaagaagagtgtgttgaagaagtttattggctacttgtgcctcgatcgtcatccgactcaagaaaggctcttgaagatgatcattcctcatcccactctggtacttcactatttttcattgctacaaatgtatctgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0001817 GO:0001818 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007276 GO:0007281 GO:0007568 GO:0008104 GO:0008143 GO:0008150 GO:0008152 GO:0008219 GO:0008284 GO:0008340 GO:0008380 GO:0008543 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010259 GO:0010467 GO:0010468 GO:0010494 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010941 GO:0010942 GO:0012501 GO:0016070 GO:0016071 GO:0017091 GO:0017145 GO:0017148 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030532 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033036 GO:0033365 GO:0034248 GO:0034249 GO:0034613 GO:0034641 GO:0035770 GO:0036464 GO:0040012 GO:0042035 GO:0042036 GO:0042127 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046483 GO:0048024 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048609 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051301 GO:0051641 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0070727 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071704 GO:0071774 GO:0080090 GO:0090304 GO:0097159 GO:0097165 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1903311 GO:1903506 GO:1903608 GO:1904035 GO:1904037 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

384

Amino Acids

44.19

Weight (kDa)

8.13

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018194)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0083151
rosa_laevigata RLG00000037044
rosa_multiflora Rmu_sc0001287.1_g000002 Rmu_sc0002184.1_g000018
rosa_roxburghii Rroxscaffold_1G00000900
rosa_rugosa Rorug05G0440000
rosa_samantha Rh5AG532300 Rh5BG563600 Rh5CG585700 Rh5DG571700
rosa_wichuraiana Rw5G050070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 145, 313, 904
AccII CGCG 1 cut(s) 750
AciI CCGC 7 cut(s) 4, 145, 313, 748, 750, 763, 904
AclWI GGATC 2 cut(s) 233, 401
AcsI RAATTY 2 cut(s) 188, 356
AcvI CACGTG 1 cut(s) 794
AfaI GTAC 1 cut(s) 1117
AfiI CCNNNNNNNGG 5 cut(s) 87, 594, 663, 732, 846
AflIII ACRYGT 1 cut(s) 793
AgsI TTSAA 8 cut(s) 187, 355, 440, 497, 946, 1016, 1031, 1088
AhlI ACTAGT 1 cut(s) 457
AjnI CCWGG 2 cut(s) 241, 409
AluBI AGCT 3 cut(s) 25, 784, 951
AluI AGCT 3 cut(s) 25, 784, 951
AlwI GGATC 2 cut(s) 233, 401
ApeKI GCWGC 2 cut(s) 25, 784
ApoI RAATTY 2 cut(s) 188, 356
AspA2I CCTAGG 1 cut(s) 955
AspS9I GGNCC 2 cut(s) 77, 836
AvaII GGWCC 2 cut(s) 77, 836
AvrII CCTAGG 1 cut(s) 955
BaeI ACNNNNGTAYC 1 cut(s) 1128
BbrPI CACGTG 1 cut(s) 794
BbvI GCAGC 2 cut(s) 12, 771
BccI CCATC 3 cut(s) 541, 613, 682
BciT130I CCWGG 2 cut(s) 243, 411
BclI TGATCA 1 cut(s) 1093
BcuI ACTAGT 1 cut(s) 457
BfaI CTAG 3 cut(s) 458, 956, 1153
BisI GCNGC 2 cut(s) 26, 785
BlnI CCTAGG 1 cut(s) 955
BlsI GCNGC 2 cut(s) 27, 786
Bme1390I CCNGG 2 cut(s) 243, 411
Bme18I GGWCC 2 cut(s) 77, 836
BmgT120I GGNCC 2 cut(s) 77, 836
BmiI GGNNCC 2 cut(s) 79, 838
BmrFI CCNGG 2 cut(s) 243, 411
BmsI GCATC 4 cut(s) 154, 322, 913, 988
BplI GAGNNNNNCTC 4 cut(s) 142, 174, 310, 342
BpmI CTGGAG 1 cut(s) 264
BpuEI CTTGAG 4 cut(s) 144, 312, 466, 1057
BsaAI YACGTR 1 cut(s) 794
BsaBI GATNNNNATC 1 cut(s) 1063
BsaJI CCNNGG 5 cut(s) 110, 278, 748, 869, 955
Bsc4I CCNNNNNNNGG 5 cut(s) 87, 594, 663, 732, 846
Bse3DI GCAATG 3 cut(s) 215, 383, 1131
Bse8I GATNNNNATC 1 cut(s) 1063
BseBI CCWGG 2 cut(s) 243, 411
BseDI CCNNGG 5 cut(s) 110, 278, 748, 869, 955
BseGI GGATG 5 cut(s) 241, 409, 1000, 1064, 1103
BseJI GATNNNNATC 1 cut(s) 1063
BseLI CCNNNNNNNGG 5 cut(s) 87, 594, 663, 732, 846
BseMI GCAATG 3 cut(s) 215, 383, 1131
BseMII CTCAG 2 cut(s) 35, 794
BseRI GAGGAG 1 cut(s) 558
BseXI GCAGC 2 cut(s) 12, 771
BseYI CCCAGC 3 cut(s) 593, 662, 731
Bsh1236I CGCG 1 cut(s) 750
Bsh1285I CGRYCG 1 cut(s) 1061
BsiEI CGRYCG 1 cut(s) 1061
BslFI GGGAC 2 cut(s) 63, 822
BslI CCNNNNNNNGG 5 cut(s) 87, 594, 663, 732, 846
BsmFI GGGAC 2 cut(s) 63, 822
BsmI GAATGC 1 cut(s) 765
Bsp143I GATC 5 cut(s) 238, 406, 502, 1058, 1093
Bsp19I CCATGG 1 cut(s) 869
BspACI CCGC 7 cut(s) 4, 145, 313, 748, 750, 763, 904
BspCNI CTCAG 2 cut(s) 34, 793
BspFNI CGCG 1 cut(s) 750
BspLI GGNNCC 2 cut(s) 79, 838
BspPI GGATC 2 cut(s) 233, 401
BsrBI CCGCTC 3 cut(s) 145, 313, 904
BsrDI GCAATG 3 cut(s) 215, 383, 1131
BssECI CCNNGG 5 cut(s) 110, 278, 748, 869, 955
BssMI GATC 5 cut(s) 238, 406, 502, 1058, 1093
BssT1I CCWWGG 2 cut(s) 869, 955
Bst2UI CCWGG 2 cut(s) 243, 411
Bst4CI ACNGT 2 cut(s) 12, 771
Bst6I CTCTTC 2 cut(s) 423, 1014
BstAPI GCANNNNNTGC 1 cut(s) 460
BstBAI YACGTR 1 cut(s) 794
BstC8I GCNNGC 2 cut(s) 30, 789
BstDEI CTNAG 2 cut(s) 21, 780
BstDSI CCRYGG 4 cut(s) 110, 278, 748, 869
BstF5I GGATG 5 cut(s) 241, 409, 1000, 1064, 1103
BstFNI CGCG 1 cut(s) 750
BstKTI GATC 5 cut(s) 241, 409, 505, 1061, 1096
BstMBI GATC 5 cut(s) 238, 406, 502, 1058, 1093
BstMCI CGRYCG 1 cut(s) 1061
BstMWI GCNNNNNNNGC 3 cut(s) 460, 957, 1051
BstNI CCWGG 2 cut(s) 243, 411
BstNSI RCATGY 2 cut(s) 32, 791
BstSCI CCNGG 2 cut(s) 241, 409
BstUI CGCG 1 cut(s) 750
BstV1I GCAGC 2 cut(s) 12, 771
BstXI CCANNNNNNTGG 2 cut(s) 204, 372
BtgI CCRYGG 4 cut(s) 110, 278, 748, 869
BtgZI GCGATG 3 cut(s) 519, 591, 660
BtsCI GGATG 5 cut(s) 241, 409, 1000, 1064, 1103
BtsI GCAGTG 4 cut(s) 588, 657, 726, 974
BtsIMutI CAGTG 6 cut(s) 8, 588, 657, 726, 767, 974
Cac8I GCNNGC 2 cut(s) 30, 789
Cfr13I GGNCC 2 cut(s) 77, 836
Cfr42I CCGCGG 1 cut(s) 751
Csp6I GTAC 1 cut(s) 1116
CviAII CATG 4 cut(s) 29, 788, 870, 927
CviJI RGCY 9 cut(s) 25, 52, 249, 491, 784, 811, 951, 1045, 1082
CviKI_1 RGCY 9 cut(s) 25, 52, 249, 491, 784, 811, 951, 1045, 1082
CviQI GTAC 1 cut(s) 1116
DdeI CTNAG 2 cut(s) 21, 780
DpnI GATC 5 cut(s) 240, 408, 504, 1060, 1095
DpnII GATC 5 cut(s) 238, 406, 502, 1058, 1093
Eam1104I CTCTTC 2 cut(s) 423, 1014
EarI CTCTTC 2 cut(s) 423, 1014
Eco130I CCWWGG 2 cut(s) 869, 955
Eco47I GGWCC 2 cut(s) 77, 836
Eco72I CACGTG 1 cut(s) 794
EcoRII CCWGG 2 cut(s) 241, 409
EcoT14I CCWWGG 2 cut(s) 869, 955
EcoT22I ATGCAT 1 cut(s) 928
ErhI CCWWGG 2 cut(s) 869, 955
FaeI CATG 4 cut(s) 32, 791, 873, 930
FaqI GGGAC 2 cut(s) 63, 822
FatI CATG 4 cut(s) 28, 787, 869, 926
FauI CCCGC 3 cut(s) 138, 306, 897
FbaI TGATCA 1 cut(s) 1093
Fnu4HI GCNGC 2 cut(s) 26, 785
FokI GGATG 5 cut(s) 248, 416, 1007, 1051, 1090
Fsp4HI GCNGC 2 cut(s) 26, 785
FspBI CTAG 3 cut(s) 458, 956, 1153
GluI GCNGC 2 cut(s) 26, 785
GsaI CCCAGC 3 cut(s) 597, 666, 735
GsuI CTGGAG 1 cut(s) 264
Hin1II CATG 4 cut(s) 32, 791, 873, 930
HindIII AAGCTT 1 cut(s) 949
HinfI GANTC 2 cut(s) 479, 1070
Hpy188I TCNGA 7 cut(s) 235, 258, 403, 478, 745, 994, 1069
Hpy188III TCNNGA 6 cut(s) 161, 329, 483, 494, 1074, 1085
HpyCH4III ACNGT 2 cut(s) 12, 771
HpyCH4IV ACGT 4 cut(s) 554, 626, 695, 793
HpyCH4V TGCA 7 cut(s) 28, 32, 787, 791, 887, 926, 979
HpyF10VI GCNNNNNNNGC 3 cut(s) 460, 957, 1051
HpyF3I CTNAG 2 cut(s) 21, 780
HpySE526I ACGT 4 cut(s) 554, 626, 695, 793
Hsp92II CATG 4 cut(s) 32, 791, 873, 930
Ksp22I TGATCA 1 cut(s) 1093
KspI CCGCGG 1 cut(s) 751
Kzo9I GATC 5 cut(s) 238, 406, 502, 1058, 1093
Lsp1109I GCAGC 2 cut(s) 12, 771
LweI GCATC 4 cut(s) 154, 322, 913, 988
MaeI CTAG 3 cut(s) 458, 956, 1153
MaeII ACGT 4 cut(s) 554, 626, 695, 793
MaeIII GTNAC 5 cut(s) 16, 526, 598, 667, 775
MalI GATC 5 cut(s) 240, 408, 504, 1060, 1095
MbiI CCGCTC 3 cut(s) 145, 313, 904
MboI GATC 5 cut(s) 238, 406, 502, 1058, 1093
MluCI AATT 7 cut(s) 96, 121, 188, 264, 289, 356, 855
MlyI GAGTC 2 cut(s) 473, 1064
MmeI TCCRAC 1 cut(s) 1092
Mph1103I ATGCAT 1 cut(s) 928
MseI TTAA 5 cut(s) 84, 558, 630, 699, 843
MslI CAYNNNNRTG 5 cut(s) 33, 234, 402, 792, 993
MspA1I CMGCKG 3 cut(s) 25, 750, 784
MspR9I CCNGG 2 cut(s) 243, 411
Mva1269I GAATGC 1 cut(s) 765
MvaI CCWGG 2 cut(s) 243, 411
MvnI CGCG 1 cut(s) 750
MwoI GCNNNNNNNGC 3 cut(s) 460, 957, 1051
NcoI CCATGG 1 cut(s) 869
NdeII GATC 5 cut(s) 238, 406, 502, 1058, 1093
NlaIII CATG 4 cut(s) 32, 791, 873, 930
NlaIV GGNNCC 2 cut(s) 79, 838
NmuCI GTSAC 3 cut(s) 526, 598, 667
NsiI ATGCAT 1 cut(s) 928
NspI RCATGY 2 cut(s) 32, 791
PaeI GCATGC 2 cut(s) 32, 791
PctI GAATGC 1 cut(s) 765
PfoI TCCNGGA 2 cut(s) 241, 409
PkrI GCNGC 2 cut(s) 27, 786
Ple19I CGATCG 1 cut(s) 1061
PleI GAGTC 2 cut(s) 473, 1064
PmaCI CACGTG 1 cut(s) 794
PmlI CACGTG 1 cut(s) 794
PpsI GAGTC 2 cut(s) 473, 1064
Ppu21I YACGTR 1 cut(s) 794
Psp6I CCWGG 2 cut(s) 241, 409
PspCI CACGTG 1 cut(s) 794
PspFI CCCAGC 3 cut(s) 593, 662, 731
PspGI CCWGG 2 cut(s) 241, 409
PspN4I GGNNCC 2 cut(s) 79, 838
PspPI GGNCC 2 cut(s) 77, 836
PvuI CGATCG 1 cut(s) 1061
PvuII CAGCTG 2 cut(s) 25, 784
RsaI GTAC 1 cut(s) 1117
RsaNI GTAC 1 cut(s) 1116
RseI CAYNNNNRTG 5 cut(s) 33, 234, 402, 792, 993
SacII CCGCGG 1 cut(s) 751
SaqAI TTAA 5 cut(s) 84, 558, 630, 699, 843
SatI GCNGC 2 cut(s) 26, 785
Sau3AI GATC 5 cut(s) 238, 406, 502, 1058, 1093
Sau96I GGNCC 2 cut(s) 77, 836
SchI GAGTC 2 cut(s) 473, 1064
ScrFI CCNGG 2 cut(s) 243, 411
SetI ASST 7 cut(s) 27, 557, 629, 698, 786, 796, 953
SfaNI GCATC 4 cut(s) 154, 322, 913, 988
Sfr303I CCGCGG 1 cut(s) 751
SgrBI CCGCGG 1 cut(s) 751
SinI GGWCC 2 cut(s) 77, 836
SmiMI CAYNNNNRTG 5 cut(s) 33, 234, 402, 792, 993
SmlI CTYRAG 4 cut(s) 159, 327, 481, 1072
SmoI CTYRAG 4 cut(s) 159, 327, 481, 1072
SpeI ACTAGT 1 cut(s) 457
SphI GCATGC 2 cut(s) 32, 791
Sse9I AATT 7 cut(s) 96, 121, 188, 264, 289, 356, 855
SsiI CCGC 7 cut(s) 4, 145, 313, 748, 750, 763, 904
SspMI CTAG 3 cut(s) 458, 956, 1153
StyD4I CCNGG 2 cut(s) 241, 409
StyI CCWWGG 2 cut(s) 869, 955
TaaI ACNGT 2 cut(s) 12, 771
TaiI ACGT 4 cut(s) 557, 629, 698, 796
TaqI TCGA 5 cut(s) 584, 653, 722, 900, 1057
TasI AATT 7 cut(s) 96, 121, 188, 264, 289, 356, 855
Tru1I TTAA 5 cut(s) 84, 558, 630, 699, 843
Tru9I TTAA 5 cut(s) 84, 558, 630, 699, 843
TscAI CASTG 6 cut(s) 15, 595, 664, 733, 774, 974
TseFI GTSAC 3 cut(s) 526, 598, 667
TseI GCWGC 2 cut(s) 25, 784
Tsp45I GTSAC 3 cut(s) 526, 598, 667
TspDTI ATGAA 2 cut(s) 893, 1120
TspRI CASTG 6 cut(s) 15, 595, 664, 733, 774, 974
VpaK11BI GGWCC 2 cut(s) 77, 836
XapI RAATTY 2 cut(s) 188, 356
XceI RCATGY 2 cut(s) 32, 791
XmaJI CCTAGG 1 cut(s) 955
XspI CTAG 3 cut(s) 458, 956, 1153
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.