Rw5G050070

nucleic acid binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0018194
Physical Location & Seq
Reverse (-)
86627507 .. 86632241
4735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G050070.1

Sequence Viewer

Length: 1200 bp
ATGATTAATCAGTCGTGGATGAAATTTATTAATTGTAACACATGGGAGTACAGTAGAGTTATGGTTTTCCCAAATAATAATTGGACAATAAAGAAGGAATCCGGGTCATCTCCATGCTACCCGATTGACCGGAGCCCAGGCCCCGCTCGCATACGATTGCTAGTTCACGCCACGGTTTGTATCAGACCGAGGCGAAGAATGCGGACACTGTTTGTAACTCAGCTGCATGCAAGTGTGAGCGAGAAGAGGCTCAAATCGGTATTTGAGAAATATGGTCCCGTTAAAAGGACGAAAATTATTCCTTACCCGTGGAAGAAGAATTGTGCTTTTGTGGAGTTTGAGCGGGAGAGTGATACTCAAGATGCGTTGGTGGATATGCGTTTCAAATTCTTCCCAGACAAATGGCAATGGAAAGTGTGCTATGCTCACTCGGATGATCCTGGAAAGAGTGTTGTAGAAGAGAATGTTGAAGAAGTTGATTGGCAACTAGTGCCTCAATCGTCATCTGACTCAAGAAAGGCTCTTGAAGAAGATCATTCCTCATCGTATTCTGGGGTCACAACTCTTGCTCCCTCATCATCTTTTGGGGTCACACCATCGCCAAGCACTTTTGATACGTTTAAGTTGCCTCCTCGCCCATTTGCCTCGACCACTGCTGGGTTTGTATCAGACCGCGGTGGAAGAATGCGGACACTGTTTGTAACTCAGCTGCATGCACGTGTGAGCGAGAAGAGGCTCAAATCGGTATTTGAGAAATATGGTCCCGTTAAAAGGACGAAAATTATTCCTTACCCGTGGAAGATGAATAGTGCATTTGTGGAGTTCGAGCGGGAGAGTGATAGTGAAGATGCATGGGTGGATATGCGTTTCAAAAGCTTCCTAGGCAAATGGCAGTGGAAAGTGCAATATGCTCACTCGGATGATGCTGGAAAGAGTGTTGAAGAAGAGTGTGTTGAAGAAGTTTATTGGCTACTTGTGCCTCGATCGTCATCCGACTCAAGAAAGGCTCTTGAAGATGATCATTCCTCATCCCACTCTGGTACTTCACTATTTTTCATTGCTACAAATGGGTCACACCAACATCAACCACTTCTGCTCCCACATCATCCTCTGTGGATTTACCCCACTCAAGTCCACCCACAAGCCGCACAACTTTCCCAGCTCACATCAAAGTTCCCGAAGTTTTCTCAGACACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0001817 GO:0001818 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007276 GO:0007281 GO:0007568 GO:0008104 GO:0008143 GO:0008150 GO:0008152 GO:0008219 GO:0008284 GO:0008340 GO:0008380 GO:0008543 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010259 GO:0010467 GO:0010468 GO:0010494 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010941 GO:0010942 GO:0012501 GO:0016070 GO:0016071 GO:0017091 GO:0017145 GO:0017148 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030532 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033036 GO:0033365 GO:0034248 GO:0034249 GO:0034613 GO:0034641 GO:0035770 GO:0036464 GO:0040012 GO:0042035 GO:0042036 GO:0042127 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046483 GO:0048024 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048609 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051301 GO:0051641 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0070727 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071704 GO:0071774 GO:0080090 GO:0090304 GO:0097159 GO:0097165 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1903311 GO:1903506 GO:1903608 GO:1904035 GO:1904037 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

399

Amino Acids

46.08

Weight (kDa)

9.11

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 70 - 133 5e-11 RNA recognition motif
RRM_1 PF00076 232 - 295 3.9e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018194)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0083151
rosa_laevigata RLG00000037044
rosa_multiflora Rmu_sc0001287.1_g000002 Rmu_sc0002184.1_g000018
rosa_roxburghii Rroxscaffold_1G00000900
rosa_rugosa Rorug05G0440000
rosa_samantha Rh5AG532300 Rh5BG563600 Rh5CG585700 Rh5DG571700
rosa_wichuraiana Rw5G050070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 146, 343, 829
AccII CGCG 1 cut(s) 675
AciI CCGC 8 cut(s) 144, 202, 343, 673, 675, 688, 829, 1146
AclWI GGATC 1 cut(s) 431
AcsI RAATTY 2 cut(s) 23, 386
AcvI CACGTG 1 cut(s) 719
AfaI GTAC 2 cut(s) 50, 1042
AfiI CCNNNNNNNGG 3 cut(s) 285, 657, 771
AflIII ACRYGT 1 cut(s) 718
AgsI TTSAA 7 cut(s) 385, 470, 527, 871, 941, 956, 1013
AhlI ACTAGT 1 cut(s) 487
AjnI CCWGG 2 cut(s) 136, 439
AluBI AGCT 4 cut(s) 223, 709, 876, 1162
AluI AGCT 4 cut(s) 223, 709, 876, 1162
AlwI GGATC 1 cut(s) 431
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 2 cut(s) 223, 709
ApoI RAATTY 2 cut(s) 23, 386
AseI ATTAAT 2 cut(s) 6, 30
AspA2I CCTAGG 1 cut(s) 880
AspS9I GGNCC 3 cut(s) 140, 275, 761
AsuC2I CCSGG 1 cut(s) 103
AvaII GGWCC 2 cut(s) 275, 761
AvrII CCTAGG 1 cut(s) 880
BanII GRGCYC 1 cut(s) 137
BbrPI CACGTG 1 cut(s) 719
BbvI GCAGC 2 cut(s) 210, 696
BccI CCATC 1 cut(s) 604
BciT130I CCWGG 2 cut(s) 138, 441
BclI TGATCA 1 cut(s) 1018
BcnI CCSGG 1 cut(s) 103
BcuI ACTAGT 1 cut(s) 487
BfaI CTAG 3 cut(s) 161, 488, 881
BisI GCNGC 3 cut(s) 224, 710, 1146
BlnI CCTAGG 1 cut(s) 880
BlsI GCNGC 3 cut(s) 225, 711, 1147
Bme1390I CCNGG 3 cut(s) 103, 138, 441
Bme18I GGWCC 2 cut(s) 275, 761
BmgT120I GGNCC 3 cut(s) 140, 275, 761
BmiI GGNNCC 4 cut(s) 134, 142, 277, 763
BmrFI CCNGG 3 cut(s) 103, 138, 441
BmsI GCATC 3 cut(s) 352, 838, 913
BplI GAGNNNNNCTC 2 cut(s) 340, 372
BpuEI CTTGAG 4 cut(s) 342, 496, 982, 1113
BpuMI CCSGG 1 cut(s) 103
BsaAI YACGTR 1 cut(s) 719
BsaBI GATNNNNATC 1 cut(s) 988
BsaJI CCNNGG 7 cut(s) 136, 171, 188, 308, 673, 794, 880
BsaWI WCCGGW 1 cut(s) 129
BsaXI ACNNNNNCTCC 4 cut(s) 553, 583, 1080, 1110
Bsc4I CCNNNNNNNGG 3 cut(s) 285, 657, 771
Bse3DI GCAATG 2 cut(s) 413, 1056
Bse8I GATNNNNATC 1 cut(s) 988
BseBI CCWGG 2 cut(s) 138, 441
BseDI CCNNGG 7 cut(s) 136, 171, 188, 308, 673, 794, 880
BseGI GGATG 6 cut(s) 24, 439, 925, 989, 1028, 1105
BseJI GATNNNNATC 1 cut(s) 988
BseLI CCNNNNNNNGG 3 cut(s) 285, 657, 771
BseMI GCAATG 2 cut(s) 413, 1056
BseMII CTCAG 2 cut(s) 233, 719
BseRI GAGGAG 1 cut(s) 621
BseXI GCAGC 2 cut(s) 210, 696
BseYI CCCAGC 2 cut(s) 656, 1158
Bsh1236I CGCG 1 cut(s) 675
Bsh1285I CGRYCG 1 cut(s) 986
BshFI GGCC 1 cut(s) 141
BsiEI CGRYCG 1 cut(s) 986
BsiSI CCGG 2 cut(s) 102, 130
BslFI GGGAC 2 cut(s) 261, 747
BslI CCNNNNNNNGG 3 cut(s) 285, 657, 771
BsmFI GGGAC 2 cut(s) 261, 747
BsmI GAATGC 2 cut(s) 204, 690
BsnI GGCC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 4 cut(s) 436, 532, 983, 1018
BspACI CCGC 8 cut(s) 144, 202, 343, 673, 675, 688, 829, 1146
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 2 cut(s) 232, 718
BspFNI CGCG 1 cut(s) 675
BspLI GGNNCC 4 cut(s) 134, 142, 277, 763
BspPI GGATC 1 cut(s) 431
BsrBI CCGCTC 3 cut(s) 146, 343, 829
BsrDI GCAATG 2 cut(s) 413, 1056
BssECI CCNNGG 7 cut(s) 136, 171, 188, 308, 673, 794, 880
BssMI GATC 4 cut(s) 436, 532, 983, 1018
BssT1I CCWWGG 1 cut(s) 880
Bst2UI CCWGG 2 cut(s) 138, 441
Bst4CI ACNGT 4 cut(s) 53, 175, 210, 696
Bst6I CTCTTC 4 cut(s) 239, 453, 725, 939
BstAPI GCANNNNNTGC 1 cut(s) 490
BstBAI YACGTR 1 cut(s) 719
BstC8I GCNNGC 3 cut(s) 148, 228, 714
BstDEI CTNAG 3 cut(s) 219, 705, 1188
BstDSI CCRYGG 4 cut(s) 171, 308, 673, 794
BstF5I GGATG 6 cut(s) 24, 439, 925, 989, 1028, 1105
BstFNI CGCG 1 cut(s) 675
BstKTI GATC 4 cut(s) 439, 535, 986, 1021
BstMBI GATC 4 cut(s) 436, 532, 983, 1018
BstMCI CGRYCG 1 cut(s) 986
BstMWI GCNNNNNNNGC 5 cut(s) 147, 199, 490, 882, 976
BstNI CCWGG 2 cut(s) 138, 441
BstNSI RCATGY 2 cut(s) 230, 716
BstSCI CCNGG 3 cut(s) 101, 136, 439
BstUI CGCG 1 cut(s) 675
BstV1I GCAGC 2 cut(s) 210, 696
BstXI CCANNNNNNTGG 1 cut(s) 402
BsuRI GGCC 1 cut(s) 141
BtgI CCRYGG 4 cut(s) 171, 308, 673, 794
BtgZI GCGATG 1 cut(s) 582
BtsCI GGATG 6 cut(s) 24, 439, 925, 989, 1028, 1105
BtsI GCAGTG 2 cut(s) 651, 899
BtsIMutI CAGTG 4 cut(s) 206, 651, 692, 899
Cac8I GCNNGC 3 cut(s) 148, 228, 714
Cfr13I GGNCC 3 cut(s) 140, 275, 761
Cfr42I CCGCGG 1 cut(s) 676
Csp6I GTAC 2 cut(s) 49, 1041
CviAII CATG 5 cut(s) 42, 114, 227, 713, 852
CviQI GTAC 2 cut(s) 49, 1041
DdeI CTNAG 3 cut(s) 219, 705, 1188
DpnI GATC 4 cut(s) 438, 534, 985, 1020
DpnII GATC 4 cut(s) 436, 532, 983, 1018
Eam1104I CTCTTC 4 cut(s) 239, 453, 725, 939
EarI CTCTTC 4 cut(s) 239, 453, 725, 939
Eco130I CCWWGG 1 cut(s) 880
Eco24I GRGCYC 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 275, 761
Eco72I CACGTG 1 cut(s) 719
EcoO109I RGGNCCY 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 136, 439
EcoT14I CCWWGG 1 cut(s) 880
EcoT22I ATGCAT 1 cut(s) 853
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 880
FaeI CATG 5 cut(s) 45, 117, 230, 716, 855
FaqI GGGAC 2 cut(s) 261, 747
FatI CATG 5 cut(s) 41, 113, 226, 712, 851
FauI CCCGC 3 cut(s) 151, 336, 822
FbaI TGATCA 1 cut(s) 1018
Fnu4HI GCNGC 3 cut(s) 224, 710, 1146
FokI GGATG 6 cut(s) 31, 446, 932, 976, 1015, 1092
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 3 cut(s) 224, 710, 1146
FspBI CTAG 3 cut(s) 161, 488, 881
GluI GCNGC 3 cut(s) 224, 710, 1146
GsaI CCCAGC 2 cut(s) 660, 1162
HaeIII GGCC 1 cut(s) 141
HapII CCGG 2 cut(s) 102, 130
Hin1II CATG 5 cut(s) 45, 117, 230, 716, 855
HindIII AAGCTT 1 cut(s) 874
HinfI GANTC 3 cut(s) 98, 509, 995
HpaII CCGG 2 cut(s) 102, 130
Hpy166II GTNNAC 2 cut(s) 166, 1135
Hpy188I TCNGA 7 cut(s) 185, 433, 508, 670, 919, 994, 1191
Hpy188III TCNNGA 6 cut(s) 359, 513, 524, 999, 1010, 1177
Hpy8I GTNNAC 2 cut(s) 166, 1135
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 4 cut(s) 53, 175, 210, 696
HpyCH4IV ACGT 2 cut(s) 617, 718
HpyCH4V TGCA 7 cut(s) 226, 230, 712, 716, 812, 851, 904
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 199, 490, 882, 976
HpyF3I CTNAG 3 cut(s) 219, 705, 1188
HpySE526I ACGT 2 cut(s) 617, 718
Hsp92II CATG 5 cut(s) 45, 117, 230, 716, 855
Ksp22I TGATCA 1 cut(s) 1018
KspI CCGCGG 1 cut(s) 676
Kzo9I GATC 4 cut(s) 436, 532, 983, 1018
LmnI GCTCC 3 cut(s) 132, 574, 1101
Lsp1109I GCAGC 2 cut(s) 210, 696
LweI GCATC 3 cut(s) 352, 838, 913
MaeI CTAG 3 cut(s) 161, 488, 881
MaeII ACGT 2 cut(s) 617, 718
MaeIII GTNAC 6 cut(s) 35, 214, 556, 589, 700, 1071
MalI GATC 4 cut(s) 438, 534, 985, 1020
MbiI CCGCTC 3 cut(s) 146, 343, 829
MboI GATC 4 cut(s) 436, 532, 983, 1018
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 7 cut(s) 23, 31, 79, 294, 319, 386, 780
MlyI GAGTC 2 cut(s) 503, 989
MmeI TCCRAC 1 cut(s) 1017
Mph1103I ATGCAT 1 cut(s) 853
MseI TTAA 5 cut(s) 6, 30, 282, 621, 768
MslI CAYNNNNRTG 5 cut(s) 112, 231, 432, 717, 918
MspA1I CMGCKG 3 cut(s) 223, 675, 709
MspI CCGG 2 cut(s) 102, 130
MspR9I CCNGG 3 cut(s) 103, 138, 441
Mva1269I GAATGC 2 cut(s) 204, 690
MvaI CCWGG 2 cut(s) 138, 441
MvnI CGCG 1 cut(s) 675
MwoI GCNNNNNNNGC 5 cut(s) 147, 199, 490, 882, 976
NciI CCSGG 1 cut(s) 103
NdeII GATC 4 cut(s) 436, 532, 983, 1018
NlaIII CATG 5 cut(s) 45, 117, 230, 716, 855
NlaIV GGNNCC 4 cut(s) 134, 142, 277, 763
NmuCI GTSAC 3 cut(s) 556, 589, 1071
NsiI ATGCAT 1 cut(s) 853
NspI RCATGY 2 cut(s) 230, 716
PaeI GCATGC 2 cut(s) 230, 716
PctI GAATGC 2 cut(s) 204, 690
PfeI GAWTC 1 cut(s) 98
PfoI TCCNGGA 1 cut(s) 439
PkrI GCNGC 3 cut(s) 225, 711, 1147
Ple19I CGATCG 1 cut(s) 986
PleI GAGTC 2 cut(s) 503, 989
PmaCI CACGTG 1 cut(s) 719
PmlI CACGTG 1 cut(s) 719
PpsI GAGTC 2 cut(s) 503, 989
Ppu21I YACGTR 1 cut(s) 719
PshBI ATTAAT 2 cut(s) 6, 30
Psp6I CCWGG 2 cut(s) 136, 439
PspCI CACGTG 1 cut(s) 719
PspFI CCCAGC 2 cut(s) 656, 1158
PspGI CCWGG 2 cut(s) 136, 439
PspN4I GGNNCC 4 cut(s) 134, 142, 277, 763
PspPI GGNCC 3 cut(s) 140, 275, 761
PvuI CGATCG 1 cut(s) 986
PvuII CAGCTG 2 cut(s) 223, 709
RsaI GTAC 2 cut(s) 50, 1042
RsaNI GTAC 2 cut(s) 49, 1041
RseI CAYNNNNRTG 5 cut(s) 112, 231, 432, 717, 918
SacII CCGCGG 1 cut(s) 676
SaqAI TTAA 5 cut(s) 6, 30, 282, 621, 768
SatI GCNGC 3 cut(s) 224, 710, 1146
Sau3AI GATC 4 cut(s) 436, 532, 983, 1018
Sau96I GGNCC 3 cut(s) 140, 275, 761
SchI GAGTC 2 cut(s) 503, 989
ScrFI CCNGG 3 cut(s) 103, 138, 441
SduI GDGCHC 1 cut(s) 137
SetI ASST 6 cut(s) 225, 620, 711, 721, 878, 1164
SfaNI GCATC 3 cut(s) 352, 838, 913
Sfr303I CCGCGG 1 cut(s) 676
SgrBI CCGCGG 1 cut(s) 676
SinI GGWCC 2 cut(s) 275, 761
SmiMI CAYNNNNRTG 5 cut(s) 112, 231, 432, 717, 918
SmlI CTYRAG 4 cut(s) 357, 511, 997, 1128
SmoI CTYRAG 4 cut(s) 357, 511, 997, 1128
SpeI ACTAGT 1 cut(s) 487
SphI GCATGC 2 cut(s) 230, 716
Sse9I AATT 7 cut(s) 23, 31, 79, 294, 319, 386, 780
SsiI CCGC 8 cut(s) 144, 202, 343, 673, 675, 688, 829, 1146
SspMI CTAG 3 cut(s) 161, 488, 881
StyD4I CCNGG 3 cut(s) 101, 136, 439
StyI CCWWGG 1 cut(s) 880
TaaI ACNGT 4 cut(s) 53, 175, 210, 696
TaiI ACGT 2 cut(s) 620, 721
TaqI TCGA 3 cut(s) 647, 825, 982
TaqII GACCGA 1 cut(s) 202
TasI AATT 7 cut(s) 23, 31, 79, 294, 319, 386, 780
TatI WGTACW 1 cut(s) 48
TauI GCSGC 1 cut(s) 1148
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 5 cut(s) 6, 30, 282, 621, 768
Tru9I TTAA 5 cut(s) 6, 30, 282, 621, 768
TscAI CASTG 4 cut(s) 213, 658, 699, 899
TseFI GTSAC 3 cut(s) 556, 589, 1071
TseI GCWGC 2 cut(s) 223, 709
Tsp45I GTSAC 3 cut(s) 556, 589, 1071
TspDTI ATGAA 3 cut(s) 35, 818, 1045
TspRI CASTG 4 cut(s) 213, 658, 699, 899
VpaK11BI GGWCC 2 cut(s) 275, 761
VspI ATTAAT 2 cut(s) 6, 30
XapI RAATTY 2 cut(s) 23, 386
XceI RCATGY 2 cut(s) 230, 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
XmaJI CCTAGG 1 cut(s) 880
XspI CTAG 3 cut(s) 161, 488, 881
Zsp2I ATGCAT 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.